Wall clock time and date at job start Tue Mar 31 2020 23:08:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86797 * 119.99558 * 2 1
4 4 H 1.48499 * 109.47001 * 240.00085 * 3 2 1
5 5 H 1.48500 * 109.47259 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.47166 * 120.00522 * 3 2 1
7 7 C 1.38807 * 120.00319 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00297 * 180.02562 * 7 2 1
9 9 N 1.36937 * 119.99900 * 359.97438 * 7 2 1
10 10 C 1.46505 * 120.00068 * 180.02562 * 9 7 2
11 11 C 1.52995 * 109.47009 * 174.37717 * 10 9 7
12 12 C 1.53007 * 115.54927 * 294.94952 * 11 10 9
13 13 C 1.52995 * 109.46933 * 279.32780 * 12 11 10
14 14 N 1.46508 * 109.47055 * 175.45757 * 13 12 11
15 15 C 1.34773 * 119.99876 * 179.97438 * 14 13 12
16 16 O 1.21557 * 120.00406 * 0.02562 * 15 14 13
17 17 C 1.47837 * 119.99936 * 179.97438 * 15 14 13
18 18 C 1.40025 * 120.56053 * 0.24308 * 17 15 14
19 19 C 1.38350 * 118.29230 * 180.28188 * 18 17 15
20 20 C 1.38359 * 119.30259 * 359.45608 * 19 18 17
21 21 N 1.31921 * 121.07626 * 0.30438 * 20 19 18
22 22 C 1.31693 * 121.88238 * 359.97433 * 21 20 19
23 23 C 1.50701 * 119.71674 * 180.02562 * 22 21 20
24 24 F 1.39899 * 109.47431 * 120.00436 * 23 22 21
25 25 F 1.39911 * 109.46925 * 239.99819 * 23 22 21
26 26 C 1.53002 * 117.52429 * 80.65229 * 11 10 9
27 27 C 1.52999 * 117.49957 * 149.28538 * 11 10 9
28 28 H 0.96997 * 120.00449 * 0.02562 * 1 2 3
29 29 H 0.97006 * 120.00138 * 0.02562 * 9 7 2
30 30 H 1.08995 * 109.47133 * 54.37441 * 10 9 7
31 31 H 1.09000 * 109.46978 * 294.37276 * 10 9 7
32 32 H 1.09001 * 109.46738 * 159.32758 * 12 11 10
33 33 H 1.08990 * 109.46831 * 39.32967 * 12 11 10
34 34 H 1.08995 * 109.47652 * 55.45835 * 13 12 11
35 35 H 1.09008 * 109.47575 * 295.45431 * 13 12 11
36 36 H 0.96995 * 119.99744 * 0.02562 * 14 13 12
37 37 H 1.08005 * 120.85652 * 0.03653 * 18 17 15
38 38 H 1.08006 * 120.34831 * 179.73391 * 19 18 17
39 39 H 1.08000 * 119.45986 * 180.28252 * 20 19 18
40 40 H 1.08994 * 109.47271 * 359.97438 * 23 22 21
41 41 H 1.08997 * 117.50327 * 214.96859 * 26 11 10
42 42 H 1.09003 * 117.49243 * 359.97438 * 26 11 10
43 43 H 1.09004 * 117.49944 * 359.96953 * 27 11 10
44 44 H 1.09003 * 117.50510 * 144.99562 * 27 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1038 1.6965 -1.2125
5 1 1.2850 2.7465 0.0006
6 1 3.1039 1.6965 1.2124
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 7 1.3257 -2.3880 -0.0005
10 6 2.0582 -3.6568 -0.0005
11 6 1.0701 -4.8162 0.1408
12 6 0.3082 -4.8761 1.4664
13 6 1.1962 -5.5143 2.5364
14 7 0.5087 -5.4734 3.8295
15 6 1.1044 -5.9830 4.9258
16 8 2.2122 -6.4761 4.8419
17 6 0.4109 -5.9412 6.2308
18 6 -0.8671 -5.3795 6.3402
19 6 -1.4703 -5.3597 7.5852
20 6 -0.8027 -5.9005 8.6697
21 7 0.3991 -6.4278 8.5358
22 6 1.0166 -6.4653 7.3732
23 6 2.3891 -7.0799 7.2758
24 9 2.3560 -8.1558 6.3821
25 9 3.2982 -6.1205 6.8170
26 6 0.3326 -5.2742 -1.1191
27 6 1.4401 -6.1446 -0.5219
28 1 -0.4850 0.8400 -0.0004
29 1 0.3556 -2.3881 -0.0005
30 1 2.7583 -3.6721 0.8348
31 1 2.6072 -3.7593 -0.9366
32 1 -0.5947 -5.4734 1.3398
33 1 0.0359 -3.8668 1.7748
34 1 2.1342 -4.9636 2.6061
35 1 1.4022 -6.5503 2.2672
36 1 -0.3755 -5.0802 3.8965
37 1 -1.3675 -4.9687 5.4757
38 1 -2.4537 -4.9306 7.7083
39 1 -1.2731 -5.8905 9.6418
40 1 2.6996 -7.4333 8.2590
41 1 -0.6953 -5.6182 -1.0037
42 1 0.5511 -4.7491 -2.0490
43 1 2.3875 -6.1925 -1.0590
44 1 1.1409 -7.0613 -0.0136
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166093717.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:08:11
Heat of formation + Delta-G solvation = -59.138184 kcal
Electronic energy + Delta-G solvation = -29201.727523 eV
Core-core repulsion = 24791.165797 eV
Total energy + Delta-G solvation = -4410.561725 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-48.84815 -46.82598 -41.01173 -39.30637 -38.21527 -35.04086 -33.93258 -33.36392
-32.53846 -30.78118 -29.94196 -27.14113 -25.98626 -25.07977 -23.58506 -22.76698
-22.51383 -21.76241 -20.94481 -18.88369 -18.22506 -17.78691 -17.41692 -17.14690
-17.05853 -16.46570 -15.71074 -15.65122 -15.49028 -15.07856 -14.76530 -14.54316
-14.35027 -13.99036 -13.64618 -13.54606 -13.38877 -13.32644 -13.12691 -13.04767
-12.68095 -12.39702 -12.24654 -11.92447 -11.50096 -11.46245 -11.14194 -10.97322
-10.82625 -10.62466 -10.50382 -10.36173 -10.17767 -9.92197 -9.89798 -9.76209
-9.65222 -9.33503 -9.06300 -8.84851 -6.90627 -5.76663 -3.04340 0.08424
0.53528 2.59330 2.92515 3.09763 3.33263 3.44470 3.48584 3.49752
3.93002 4.04615 4.10542 4.19566 4.26729 4.48023 4.61425 4.73553
4.84455 4.96641 4.99488 5.00701 5.08838 5.14398 5.29979 5.35114
5.47033 5.51771 5.58258 5.65928 5.74125 5.90152 5.91408 6.13613
6.16750 6.21997 6.37031 6.42410 6.45616 6.53235 6.76389 6.84248
7.18315 7.35236 7.70441 8.05290 8.42683 9.54328 10.12432 10.48366
11.46150
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.011064 B = 0.002800 C = 0.002559
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2530.011421 B = 9996.253628 C =10940.970191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.013 4.013
3 Si 0.906 3.094
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.238 4.238
8 H 0.069 0.931
9 N -0.727 5.727
10 C 0.187 3.813
11 C -0.119 4.119
12 C -0.091 4.091
13 C 0.126 3.874
14 N -0.718 5.718
15 C 0.549 3.451
16 O -0.506 6.506
17 C -0.145 4.145
18 C -0.045 4.045
19 C -0.157 4.157
20 C 0.119 3.881
21 N -0.463 5.463
22 C 0.100 3.900
23 C 0.337 3.663
24 F -0.183 7.183
25 F -0.180 7.180
26 C -0.164 4.164
27 C -0.177 4.177
28 H 0.255 0.745
29 H 0.384 0.616
30 H 0.027 0.973
31 H 0.017 0.983
32 H 0.062 0.938
33 H 0.087 0.913
34 H 0.076 0.924
35 H 0.068 0.932
36 H 0.398 0.602
37 H 0.148 0.852
38 H 0.150 0.850
39 H 0.170 0.830
40 H 0.122 0.878
41 H 0.088 0.912
42 H 0.096 0.904
43 H 0.093 0.907
44 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.407 -16.352 15.528 23.190
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.584 5.584
2 C -0.209 4.209
3 Si 0.737 3.263
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.213 1.213
7 C -0.369 4.369
8 H 0.087 0.913
9 N -0.371 5.371
10 C 0.060 3.940
11 C -0.120 4.120
12 C -0.129 4.129
13 C 0.003 3.997
14 N -0.369 5.369
15 C 0.333 3.667
16 O -0.381 6.381
17 C -0.150 4.150
18 C -0.071 4.071
19 C -0.176 4.176
20 C -0.038 4.038
21 N -0.172 5.172
22 C -0.040 4.040
23 C 0.283 3.717
24 F -0.164 7.164
25 F -0.161 7.161
26 C -0.201 4.201
27 C -0.215 4.215
28 H 0.064 0.936
29 H 0.218 0.782
30 H 0.045 0.955
31 H 0.035 0.965
32 H 0.081 0.919
33 H 0.106 0.894
34 H 0.094 0.906
35 H 0.086 0.914
36 H 0.233 0.767
37 H 0.166 0.834
38 H 0.168 0.832
39 H 0.187 0.813
40 H 0.140 0.860
41 H 0.107 0.893
42 H 0.114 0.886
43 H 0.111 0.889
44 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -4.008 -16.932 16.135 23.730
hybrid contribution -0.884 1.668 -0.840 2.066
sum -4.892 -15.263 15.296 22.155
Atomic orbital electron populations
1.69646 1.05055 1.25649 1.58004 1.24699 0.95507 0.97570 1.03139
0.86285 0.78545 0.83595 0.77894 1.21291 1.21718 1.21297 1.19203
0.91031 0.84198 1.42454 0.91307 1.42282 1.05861 0.99639 1.89353
1.20184 0.91904 0.84155 0.97764 1.21553 1.01763 0.96094 0.92616
1.21260 0.96841 1.02248 0.92562 1.21430 0.96505 1.01320 0.80400
1.45871 1.21308 1.61116 1.08643 1.17912 0.85909 0.79454 0.83392
1.90903 1.18400 1.43587 1.85257 1.20930 0.96374 1.02166 0.95525
1.21899 0.92699 0.93636 0.98911 1.22293 1.02108 1.00165 0.93081
1.23015 0.89497 0.91680 0.99629 1.67343 1.10103 1.15314 1.24391
1.21901 0.96862 0.96445 0.88812 1.19804 0.83633 0.77148 0.91157
1.93045 1.96606 1.55170 1.71556 1.93072 1.67472 1.64654 1.90938
1.22965 0.96435 1.03092 0.97650 1.22981 1.00069 0.94022 1.04392
0.93568 0.78188 0.95513 0.96525 0.91940 0.89428 0.90558 0.91371
0.76729 0.83425 0.83180 0.81274 0.86043 0.89345 0.88579 0.88893
0.89230
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16
2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16
3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16
4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16
8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
9 N -0.73 -18.06 5.30 -59.91 -0.32 -18.38 16
10 C 0.19 3.78 6.10 -4.04 -0.02 3.75 16
11 C -0.12 -1.88 1.52 -154.51 -0.23 -2.11 16
12 C -0.09 -1.28 5.24 -26.73 -0.14 -1.42 16
13 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16
14 N -0.72 -8.87 5.51 -61.25 -0.34 -9.21 16
15 C 0.55 7.75 7.58 -12.33 -0.09 7.66 16
16 O -0.51 -8.81 11.33 5.32 0.06 -8.75 16
17 C -0.14 -1.68 5.85 -104.82 -0.61 -2.30 16
18 C -0.05 -0.37 9.65 -38.87 -0.37 -0.74 16
19 C -0.16 -0.96 10.10 -39.50 -0.40 -1.36 16
20 C 0.12 0.83 11.17 -17.47 -0.20 0.64 16
21 N -0.46 -4.67 10.24 -9.14 -0.09 -4.76 16
22 C 0.10 1.19 6.31 -82.17 -0.52 0.67 16
23 C 0.34 4.19 5.02 36.01 0.18 4.37 16
24 F -0.18 -2.64 15.03 2.25 0.03 -2.61 16
25 F -0.18 -2.75 15.03 2.25 0.03 -2.72 16
26 C -0.16 -2.38 9.90 -26.73 -0.26 -2.64 16
27 C -0.18 -2.35 9.57 -26.73 -0.26 -2.60 16
28 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16
29 H 0.38 9.94 7.46 -40.82 -0.30 9.64 16
30 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16
31 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16
32 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16
33 H 0.09 1.43 7.64 -51.93 -0.40 1.04 16
34 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16
35 H 0.07 0.93 7.80 -51.92 -0.41 0.53 16
36 H 0.40 3.81 6.58 -40.82 -0.27 3.54 16
37 H 0.15 0.84 6.52 -52.48 -0.34 0.50 16
38 H 0.15 0.44 8.06 -52.48 -0.42 0.01 16
39 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16
40 H 0.12 1.08 8.11 -51.93 -0.42 0.66 16
41 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16
42 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16
43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
44 H 0.09 1.05 7.98 -51.93 -0.41 0.64 16
LS Contribution 375.49 15.07 5.66 5.66
Total: -1.00 -34.73 375.49 -8.30 -43.03
By element:
Atomic # 1 Polarization: 14.86 SS G_CDS: -5.84 Total: 9.02 kcal
Atomic # 6 Polarization: 1.57 SS G_CDS: -3.20 Total: -1.63 kcal
Atomic # 7 Polarization: -59.40 SS G_CDS: -0.02 Total: -59.42 kcal
Atomic # 8 Polarization: -8.81 SS G_CDS: 0.06 Total: -8.75 kcal
Atomic # 9 Polarization: -5.39 SS G_CDS: 0.07 Total: -5.33 kcal
Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -34.73 -8.30 -43.03 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166093717.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.109 kcal
(2) G-P(sol) polarization free energy of solvation -34.726 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.835 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.138 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds