Wall clock time and date at job start Tue Mar 31 2020 23:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29515 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48496 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47059 * 299.99666 * 3 2 1 6 6 H 1.48496 * 109.47294 * 59.99859 * 3 2 1 7 7 C 1.46517 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99790 * 195.31088 * 7 2 1 9 9 C 1.40355 * 120.00155 * 15.31809 * 7 2 1 10 10 C 1.41335 * 120.25272 * 24.21858 * 9 7 2 11 11 C 1.36494 * 119.96091 * 180.27534 * 10 9 7 12 12 C 1.38663 * 120.50017 * 359.46692 * 11 10 9 13 13 N 1.48020 * 119.73710 * 180.25776 * 12 11 10 14 14 O 1.31698 * 120.00327 * 353.68717 * 13 12 11 15 15 O 1.31701 * 119.99393 * 173.69255 * 13 12 11 16 16 C 1.39491 * 120.51664 * 0.28696 * 12 11 10 17 17 N 1.39666 * 119.98703 * 179.97438 * 16 12 11 18 18 C 1.46503 * 120.00060 * 186.05617 * 17 16 12 19 19 C 1.52998 * 109.47667 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.46795 * 64.99871 * 19 18 17 21 21 C 1.42906 * 113.99660 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47075 * 180.02562 * 21 20 19 23 23 O 1.42896 * 109.47576 * 64.99382 * 22 21 20 24 24 C 1.42894 * 114.00353 * 180.02562 * 23 22 21 25 25 C 1.53004 * 109.47193 * 180.02562 * 24 23 22 26 26 N 1.46895 * 109.47038 * 65.00202 * 25 24 23 27 27 C 1.38164 * 120.01865 * 359.97322 * 16 12 11 28 28 H 0.96999 * 120.00172 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.02361 * 0.03784 * 10 9 7 30 30 H 1.07997 * 119.74782 * 179.75038 * 11 10 9 31 31 H 0.96998 * 120.00829 * 6.05517 * 17 16 12 32 32 H 1.09000 * 109.46871 * 300.00413 * 18 17 16 33 33 H 1.09000 * 109.47205 * 59.99439 * 18 17 16 34 34 H 1.08995 * 109.47154 * 184.99637 * 19 18 17 35 35 H 1.08998 * 109.46751 * 305.00004 * 19 18 17 36 36 H 1.08994 * 109.46721 * 299.99700 * 21 20 19 37 37 H 1.09000 * 109.46894 * 59.99865 * 21 20 19 38 38 H 1.09000 * 109.47335 * 185.00137 * 22 21 20 39 39 H 1.09005 * 109.46790 * 305.00049 * 22 21 20 40 40 H 1.09000 * 109.47203 * 300.00533 * 24 23 22 41 41 H 1.08998 * 109.47079 * 60.00237 * 24 23 22 42 42 H 1.09008 * 109.46791 * 185.00160 * 25 24 23 43 43 H 1.08993 * 109.47011 * 304.99611 * 25 24 23 44 44 H 1.00903 * 111.00467 * 56.04400 * 26 25 24 45 45 H 1.00902 * 110.99807 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.24709 * 180.02562 * 27 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 3.6890 1.3465 0.0006 5 1 1.8703 2.3964 -1.2126 6 1 1.8703 2.3965 1.2124 7 6 2.0277 -1.2689 0.0006 8 1 3.0790 -1.2853 0.2476 9 6 1.3634 -2.4630 -0.3200 10 6 0.1938 -2.4363 -1.1130 11 6 -0.4507 -3.6006 -1.4165 12 6 0.0391 -4.8154 -0.9615 13 7 -0.6701 -6.0683 -1.3055 14 8 -1.8267 -6.0192 -1.9335 15 8 -0.1445 -7.2321 -0.9833 16 6 1.1946 -4.8659 -0.1818 17 7 1.6780 -6.0955 0.2711 18 6 2.8120 -6.1406 1.1976 19 6 3.1382 -7.5971 1.5340 20 8 3.5862 -8.2693 0.3552 21 6 3.9184 -9.6439 0.5609 22 6 4.3832 -10.2595 -0.7604 23 8 5.5994 -9.6345 -1.1754 24 6 6.1216 -10.1388 -2.4062 25 6 7.4176 -9.4019 -2.7504 26 7 8.4387 -9.7092 -1.7401 27 6 1.8611 -3.6999 0.1427 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1920 -1.4949 -1.4755 30 1 -1.3464 -3.5758 -2.0194 31 1 1.2630 -6.9197 -0.0278 32 1 3.6794 -5.6715 0.7332 33 1 2.5556 -5.6055 2.1119 34 1 3.9225 -7.6283 2.2903 35 1 2.2447 -8.0905 1.9164 36 1 4.7187 -9.7180 1.2972 37 1 3.0408 -10.1796 0.9229 38 1 4.5517 -11.3277 -0.6243 39 1 3.6181 -10.1064 -1.5215 40 1 6.3261 -11.2046 -2.3046 41 1 5.3925 -9.9829 -3.2012 42 1 7.7686 -9.7230 -3.7312 43 1 7.2321 -8.3280 -2.7646 44 1 8.5823 -10.7049 -1.6622 45 1 9.3050 -9.2343 -1.9455 46 1 2.7563 -3.7348 0.7458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170512774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:31 Heat of formation + Delta-G solvation = -59.127958 kcal Electronic energy + Delta-G solvation = -29013.523627 eV Core-core repulsion = 24714.049861 eV Total energy + Delta-G solvation = -4299.473766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.94091 -38.49294 -37.50928 -36.70462 -35.37222 -34.64247 -33.92558 -32.75864 -30.97260 -30.58354 -29.28717 -27.65461 -27.01341 -26.70671 -23.72330 -22.66404 -22.55064 -22.15448 -20.98676 -20.33168 -18.22120 -17.19999 -17.05613 -17.02134 -16.65597 -16.31677 -15.87987 -15.75745 -15.55264 -15.31898 -14.71253 -14.49841 -14.46890 -14.19421 -13.68357 -13.56156 -13.36448 -13.09162 -13.03520 -12.71905 -12.49717 -12.07019 -11.94572 -11.85670 -11.64350 -11.42719 -11.39126 -11.09983 -11.05129 -10.85291 -10.65390 -10.07450 -9.91241 -9.74226 -9.65723 -9.53099 -9.45849 -9.39515 -9.17835 -8.92515 -8.23617 -7.63130 -6.74408 -5.11249 0.90508 2.40372 2.66032 2.74043 2.85313 2.91937 2.93665 3.35364 3.55913 3.70735 3.92217 4.16414 4.30020 4.79917 4.94326 5.01693 5.09641 5.10269 5.17555 5.22139 5.30336 5.34986 5.41441 5.48517 5.51830 5.71452 5.72002 5.75839 5.94481 6.08852 6.12354 6.34527 6.42533 6.57859 6.64898 6.81117 6.92897 7.13931 7.17696 7.19696 7.30110 7.34350 7.38723 7.58446 7.76357 8.00107 8.13050 8.37732 8.42637 8.76810 9.21397 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.002683 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.963327 B =10434.168773 C =12088.654001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.062 3.938 3 Si 0.931 3.069 4 H -0.249 1.249 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.376 4.376 8 H 0.102 0.898 9 C 0.138 3.862 10 C -0.167 4.167 11 C -0.042 4.042 12 C -0.147 4.147 13 N 0.059 4.941 14 O -0.316 6.316 15 O -0.343 6.343 16 C 0.303 3.697 17 N -0.729 5.729 18 C 0.125 3.875 19 C 0.054 3.946 20 O -0.370 6.370 21 C 0.066 3.934 22 C 0.062 3.938 23 O -0.362 6.362 24 C 0.063 3.937 25 C 0.062 3.938 26 N -0.842 5.842 27 C -0.318 4.318 28 H 0.303 0.697 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.416 0.584 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.053 0.947 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.337 0.663 45 H 0.341 0.659 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.083 -7.599 1.227 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.172 1.172 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.401 4.401 8 H 0.120 0.880 9 C 0.133 3.867 10 C -0.189 4.189 11 C -0.062 4.062 12 C -0.254 4.254 13 N 0.474 4.526 14 O -0.471 6.471 15 O -0.483 6.483 16 C 0.194 3.806 17 N -0.377 5.377 18 C 0.000 4.000 19 C -0.023 4.023 20 O -0.289 6.289 21 C -0.011 4.011 22 C -0.014 4.014 23 O -0.281 6.281 24 C -0.014 4.014 25 C -0.068 4.068 26 N -0.372 5.372 27 C -0.345 4.345 28 H 0.116 0.884 29 H 0.151 0.849 30 H 0.137 0.863 31 H 0.268 0.732 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.634 -6.919 1.815 14.518 hybrid contribution 0.180 -0.773 -0.848 1.161 sum 12.814 -7.691 0.968 14.977 Atomic orbital electron populations 1.69116 1.09169 1.32295 1.22646 1.27872 0.94890 1.03142 0.91123 0.85855 0.81325 0.78056 0.79597 1.17156 1.18626 1.18893 1.21483 0.97543 0.89484 1.31603 0.87981 1.17648 0.90338 0.92045 0.86648 1.21182 0.98460 0.96419 1.02841 1.20004 0.98608 0.89807 0.97778 1.19612 1.01607 0.81983 1.22226 1.49910 1.01111 1.03145 0.98471 1.96101 1.06938 1.96015 1.48083 1.95673 1.70530 1.15221 1.66911 1.17263 0.88258 0.86946 0.88140 1.46041 1.34516 1.07595 1.49512 1.21298 0.90557 0.94078 0.94067 1.22726 0.98348 0.93221 0.88048 1.88062 1.86084 1.22182 1.32525 1.22450 0.98592 0.83643 0.96410 1.22510 0.87257 0.95304 0.96372 1.88074 1.38902 1.62141 1.38937 1.22490 0.94935 0.96646 0.87359 1.21807 0.90958 1.01896 0.92176 1.58580 1.12604 1.14233 1.51796 1.20306 1.06886 0.90044 1.17239 0.88375 0.84889 0.86264 0.73221 0.91400 0.91034 0.92085 0.92881 0.92639 0.91984 0.92322 0.92333 0.93938 0.92867 0.94270 0.89772 0.85140 0.84678 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -14.32 10.93 55.98 0.61 -13.71 16 2 C 0.06 1.19 5.36 -15.19 -0.08 1.11 16 3 Si 0.93 14.07 29.67 -169.99 -5.04 9.03 16 4 H -0.25 -3.75 7.11 56.52 0.40 -3.35 16 5 H -0.26 -3.93 7.11 56.52 0.40 -3.53 16 6 H -0.26 -3.96 7.11 56.52 0.40 -3.55 16 7 C -0.38 -7.90 9.31 -35.45 -0.33 -8.23 16 8 H 0.10 1.99 7.98 -52.49 -0.42 1.57 16 9 C 0.14 3.16 5.62 -106.82 -0.60 2.56 16 10 C -0.17 -3.86 8.72 -39.03 -0.34 -4.20 16 11 C -0.04 -1.00 9.50 -40.05 -0.38 -1.38 16 12 C -0.15 -3.70 6.92 -79.32 -0.55 -4.25 16 13 N 0.06 1.59 4.98 34.27 0.17 1.76 16 14 O -0.32 -8.80 19.14 -31.57 -0.60 -9.40 16 15 O -0.34 -9.15 16.29 -31.57 -0.51 -9.66 16 16 C 0.30 7.10 6.63 -83.85 -0.56 6.54 16 17 N -0.73 -15.40 5.57 -58.68 -0.33 -15.73 16 18 C 0.13 2.08 5.34 -4.04 -0.02 2.06 16 19 C 0.05 0.76 6.07 37.16 0.23 0.98 16 20 O -0.37 -5.97 10.25 -40.08 -0.41 -6.39 16 21 C 0.07 0.82 6.32 37.16 0.23 1.06 16 22 C 0.06 0.75 6.32 37.16 0.23 0.98 16 23 O -0.36 -4.96 10.25 -40.08 -0.41 -5.37 16 24 C 0.06 0.65 6.22 37.16 0.23 0.88 16 25 C 0.06 0.58 7.17 -3.82 -0.03 0.55 16 26 N -0.84 -7.45 9.57 -10.37 -0.10 -7.55 16 27 C -0.32 -7.08 9.08 -38.51 -0.35 -7.42 16 28 H 0.30 5.26 8.27 -40.82 -0.34 4.93 16 29 H 0.13 2.98 6.07 -52.49 -0.32 2.67 16 30 H 0.12 2.74 7.57 -52.49 -0.40 2.34 16 31 H 0.42 9.36 4.67 -42.09 -0.20 9.17 16 32 H 0.07 1.14 7.71 -51.93 -0.40 0.74 16 33 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.34 2.40 8.99 -39.29 -0.35 2.04 16 45 H 0.34 2.37 9.08 -39.29 -0.36 2.02 16 46 H 0.11 2.32 6.72 -52.49 -0.35 1.97 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -30.75 393.16 -9.59 -40.34 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -6.58 Total: 19.53 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.31 Total: -8.77 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.36 Total: -35.23 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.94 Total: -30.82 kcal Atomic # 14 Polarization: 14.07 SS G_CDS: -5.04 Total: 9.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.75 -9.59 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170512774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.791 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds