Wall clock time and date at job start Tue Mar 31 2020 23:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29515 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48496 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47059 * 299.99666 * 3 2 1 6 6 H 1.48496 * 109.47294 * 59.99859 * 3 2 1 7 7 C 1.46517 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99790 * 195.31088 * 7 2 1 9 9 C 1.40355 * 120.00155 * 15.31809 * 7 2 1 10 10 C 1.41335 * 120.25272 * 24.21858 * 9 7 2 11 11 C 1.36494 * 119.96091 * 180.27534 * 10 9 7 12 12 C 1.38663 * 120.50017 * 359.46692 * 11 10 9 13 13 N 1.48020 * 119.73710 * 180.25776 * 12 11 10 14 14 O 1.31698 * 120.00327 * 353.68717 * 13 12 11 15 15 O 1.31701 * 119.99393 * 173.69255 * 13 12 11 16 16 C 1.39491 * 120.51664 * 0.28696 * 12 11 10 17 17 N 1.39666 * 119.98703 * 179.97438 * 16 12 11 18 18 C 1.46503 * 120.00060 * 186.05617 * 17 16 12 19 19 C 1.52998 * 109.47667 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.46795 * 64.99871 * 19 18 17 21 21 C 1.42906 * 113.99660 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47075 * 180.02562 * 21 20 19 23 23 O 1.42896 * 109.47576 * 64.99382 * 22 21 20 24 24 C 1.42894 * 114.00353 * 180.02562 * 23 22 21 25 25 C 1.53004 * 109.47193 * 180.02562 * 24 23 22 26 26 N 1.46895 * 109.47038 * 65.00202 * 25 24 23 27 27 C 1.38164 * 120.01865 * 359.97322 * 16 12 11 28 28 H 0.96999 * 120.00172 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.02361 * 0.03784 * 10 9 7 30 30 H 1.07997 * 119.74782 * 179.75038 * 11 10 9 31 31 H 0.96998 * 120.00829 * 6.05517 * 17 16 12 32 32 H 1.09000 * 109.46871 * 300.00413 * 18 17 16 33 33 H 1.09000 * 109.47205 * 59.99439 * 18 17 16 34 34 H 1.08995 * 109.47154 * 184.99637 * 19 18 17 35 35 H 1.08998 * 109.46751 * 305.00004 * 19 18 17 36 36 H 1.08994 * 109.46721 * 299.99700 * 21 20 19 37 37 H 1.09000 * 109.46894 * 59.99865 * 21 20 19 38 38 H 1.09000 * 109.47335 * 185.00137 * 22 21 20 39 39 H 1.09005 * 109.46790 * 305.00049 * 22 21 20 40 40 H 1.09000 * 109.47203 * 300.00533 * 24 23 22 41 41 H 1.08998 * 109.47079 * 60.00237 * 24 23 22 42 42 H 1.09008 * 109.46791 * 185.00160 * 25 24 23 43 43 H 1.08993 * 109.47011 * 304.99611 * 25 24 23 44 44 H 1.00903 * 111.00467 * 56.04400 * 26 25 24 45 45 H 1.00902 * 110.99807 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.24709 * 180.02562 * 27 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 3.6890 1.3465 0.0006 5 1 1.8703 2.3964 -1.2126 6 1 1.8703 2.3965 1.2124 7 6 2.0277 -1.2689 0.0006 8 1 3.0790 -1.2853 0.2476 9 6 1.3634 -2.4630 -0.3200 10 6 0.1938 -2.4363 -1.1130 11 6 -0.4507 -3.6006 -1.4165 12 6 0.0391 -4.8154 -0.9615 13 7 -0.6701 -6.0683 -1.3055 14 8 -1.8267 -6.0192 -1.9335 15 8 -0.1445 -7.2321 -0.9833 16 6 1.1946 -4.8659 -0.1818 17 7 1.6780 -6.0955 0.2711 18 6 2.8120 -6.1406 1.1976 19 6 3.1382 -7.5971 1.5340 20 8 3.5862 -8.2693 0.3552 21 6 3.9184 -9.6439 0.5609 22 6 4.3832 -10.2595 -0.7604 23 8 5.5994 -9.6345 -1.1754 24 6 6.1216 -10.1388 -2.4062 25 6 7.4176 -9.4019 -2.7504 26 7 8.4387 -9.7092 -1.7401 27 6 1.8611 -3.6999 0.1427 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1920 -1.4949 -1.4755 30 1 -1.3464 -3.5758 -2.0194 31 1 1.2630 -6.9197 -0.0278 32 1 3.6794 -5.6715 0.7332 33 1 2.5556 -5.6055 2.1119 34 1 3.9225 -7.6283 2.2903 35 1 2.2447 -8.0905 1.9164 36 1 4.7187 -9.7180 1.2972 37 1 3.0408 -10.1796 0.9229 38 1 4.5517 -11.3277 -0.6243 39 1 3.6181 -10.1064 -1.5215 40 1 6.3261 -11.2046 -2.3046 41 1 5.3925 -9.9829 -3.2012 42 1 7.7686 -9.7230 -3.7312 43 1 7.2321 -8.3280 -2.7646 44 1 8.5823 -10.7049 -1.6622 45 1 9.3050 -9.2343 -1.9455 46 1 2.7563 -3.7348 0.7458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170512774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:30 Heat of formation + Delta-G solvation = -81.156775 kcal Electronic energy + Delta-G solvation = -29014.478868 eV Core-core repulsion = 24714.049861 eV Total energy + Delta-G solvation = -4300.429007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.63014 -39.53796 -38.60541 -38.46074 -36.90956 -35.66823 -35.36041 -34.54657 -32.60992 -31.96525 -30.53358 -28.85023 -28.51627 -28.16888 -25.49044 -24.09360 -23.50130 -22.91440 -22.74609 -21.95299 -19.88401 -18.88953 -18.47607 -18.12767 -17.98971 -17.54406 -17.15438 -16.99309 -16.84748 -16.42324 -16.30318 -15.91354 -15.63459 -15.10762 -15.00754 -14.91456 -14.75157 -14.60255 -14.15030 -14.03047 -13.97090 -13.50986 -13.11385 -13.07588 -12.94152 -12.80830 -12.68371 -12.37523 -12.07184 -11.95627 -11.85083 -11.77998 -11.61461 -11.45271 -11.42789 -11.24567 -10.88383 -10.59455 -10.53010 -10.05023 -9.57106 -9.24057 -8.49227 -6.87360 -1.04752 0.78859 1.10847 1.13197 1.40683 1.54811 1.64435 2.08879 2.31737 2.58262 2.72457 2.75526 3.29297 3.66405 3.89662 3.96831 4.06098 4.18203 4.20497 4.24634 4.25947 4.41239 4.42173 4.45241 4.46561 4.50809 4.53504 4.62026 4.65255 4.74885 4.78956 4.83895 4.86707 4.94411 4.96455 5.13748 5.43880 5.57459 5.60729 5.76072 6.01997 6.14459 6.22763 6.27115 6.33129 6.39329 6.57081 6.62377 6.65489 7.03242 7.64221 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.002683 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.963327 B =10434.168773 C =12088.654001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.023 3.977 3 Si 1.009 2.991 4 H -0.240 1.240 5 H -0.258 1.258 6 H -0.257 1.257 7 C -0.321 4.321 8 H 0.131 0.869 9 C 0.086 3.914 10 C -0.135 4.135 11 C -0.079 4.079 12 C -0.133 4.133 13 N 0.055 4.945 14 O -0.410 6.410 15 O -0.395 6.395 16 C 0.278 3.722 17 N -0.731 5.731 18 C 0.119 3.881 19 C 0.056 3.944 20 O -0.404 6.404 21 C 0.060 3.940 22 C 0.060 3.940 23 O -0.389 6.389 24 C 0.056 3.944 25 C 0.064 3.936 26 N -0.855 5.855 27 C -0.309 4.309 28 H 0.323 0.677 29 H 0.141 0.859 30 H 0.114 0.886 31 H 0.408 0.592 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.347 0.653 45 H 0.350 0.650 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.766 -3.707 3.156 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.209 4.209 3 Si 0.825 3.175 4 H -0.163 1.163 5 H -0.182 1.182 6 H -0.181 1.181 7 C -0.346 4.346 8 H 0.148 0.852 9 C 0.080 3.920 10 C -0.157 4.157 11 C -0.099 4.099 12 C -0.249 4.249 13 N 0.441 4.559 14 O -0.540 6.540 15 O -0.521 6.521 16 C 0.168 3.832 17 N -0.375 5.375 18 C -0.005 4.005 19 C -0.021 4.021 20 O -0.324 6.324 21 C -0.016 4.016 22 C -0.016 4.016 23 O -0.309 6.309 24 C -0.021 4.021 25 C -0.067 4.067 26 N -0.387 5.387 27 C -0.337 4.337 28 H 0.138 0.862 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.258 0.742 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.153 -3.269 3.673 16.885 hybrid contribution -0.577 -1.144 -1.205 1.759 sum 15.576 -4.413 2.467 16.376 Atomic orbital electron populations 1.69083 1.10768 1.34975 1.19277 1.28911 0.95597 1.05918 0.90469 0.84699 0.80019 0.72916 0.79821 1.16282 1.18246 1.18115 1.22336 0.98588 0.89570 1.24080 0.85176 1.17970 0.91350 0.93365 0.89284 1.21380 0.97386 0.95964 1.01003 1.20048 0.99704 0.90145 0.99983 1.20174 1.01762 0.81963 1.21007 1.49857 1.01609 1.03281 1.01194 1.96025 1.09073 1.96134 1.52805 1.95594 1.71142 1.16025 1.69290 1.17475 0.88407 0.88358 0.88997 1.46250 1.35164 1.06540 1.49594 1.21602 0.88888 0.96282 0.93724 1.22777 0.99513 0.91582 0.88193 1.88018 1.86395 1.24104 1.33921 1.22671 0.99628 0.82176 0.97093 1.22613 0.86433 0.96906 0.95691 1.88026 1.39324 1.63296 1.40238 1.22692 0.95207 0.97969 0.86241 1.21764 0.90847 1.00507 0.93543 1.58539 1.13051 1.15237 1.51895 1.20468 1.07070 0.89200 1.16977 0.86243 0.84171 0.86763 0.74219 0.91370 0.89141 0.88672 0.92812 0.91193 0.90640 0.89255 0.94216 0.91847 0.93214 0.91868 0.91919 0.84021 0.83623 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -25.79 10.93 23.21 0.25 -25.54 16 2 C 0.02 0.75 5.36 87.19 0.47 1.22 16 3 Si 1.01 23.37 29.67 68.60 2.04 25.40 16 4 H -0.24 -5.34 7.11 99.48 0.71 -4.64 16 5 H -0.26 -5.96 7.11 99.48 0.71 -5.25 16 6 H -0.26 -5.79 7.11 99.48 0.71 -5.09 16 7 C -0.32 -11.79 9.31 24.95 0.23 -11.56 16 8 H 0.13 4.15 7.98 -2.91 -0.02 4.13 16 9 C 0.09 3.68 5.62 -21.29 -0.12 3.56 16 10 C -0.13 -6.11 8.72 22.62 0.20 -5.91 16 11 C -0.08 -3.93 9.50 21.96 0.21 -3.72 16 12 C -0.13 -7.14 6.92 36.78 0.25 -6.89 16 13 N 0.05 3.25 4.98 -45.50 -0.23 3.02 16 14 O -0.41 -25.69 19.14 3.52 0.07 -25.62 16 15 O -0.39 -23.29 16.29 3.51 0.06 -23.23 16 16 C 0.28 13.30 6.63 38.18 0.25 13.55 16 17 N -0.73 -31.83 5.57 -339.55 -1.89 -33.72 16 18 C 0.12 3.85 5.34 86.38 0.46 4.31 16 19 C 0.06 1.54 6.07 71.98 0.44 1.98 16 20 O -0.40 -13.21 10.25 -144.34 -1.48 -14.69 16 21 C 0.06 1.49 6.32 71.98 0.45 1.94 16 22 C 0.06 1.45 6.32 71.98 0.45 1.90 16 23 O -0.39 -10.68 10.25 -144.34 -1.48 -12.16 16 24 C 0.06 1.14 6.22 71.98 0.45 1.59 16 25 C 0.06 1.16 7.17 86.31 0.62 1.78 16 26 N -0.86 -14.20 9.57 -186.72 -1.79 -15.99 16 27 C -0.31 -13.22 9.08 22.96 0.21 -13.01 16 28 H 0.32 9.69 8.27 -92.71 -0.77 8.93 16 29 H 0.14 6.02 6.07 -2.91 -0.02 6.00 16 30 H 0.11 5.68 7.57 -2.91 -0.02 5.66 16 31 H 0.41 19.57 4.67 -112.87 -0.53 19.05 16 32 H 0.07 2.20 7.71 -2.39 -0.02 2.18 16 33 H 0.09 2.57 8.13 -2.39 -0.02 2.55 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.35 4.44 8.99 -89.69 -0.81 3.63 16 45 H 0.35 4.49 9.08 -89.69 -0.81 3.68 16 46 H 0.14 5.14 6.72 -2.91 -0.02 5.12 16 Total: -1.00 -71.67 393.16 -0.98 -72.65 By element: Atomic # 1 Polarization: 60.24 SS G_CDS: -1.11 Total: 59.14 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.58 Total: -9.26 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -3.65 Total: -72.23 kcal Atomic # 8 Polarization: -72.87 SS G_CDS: -2.84 Total: -75.70 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: 2.04 Total: 25.40 kcal Total: -71.67 -0.98 -72.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170512774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.505 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds