Wall clock time and date at job start Tue Mar 31 2020 23:07:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86811 * 119.99982 * 2 1
4 4 H 1.48496 * 109.46792 * 270.00106 * 3 2 1
5 5 H 1.48501 * 109.46975 * 30.00148 * 3 2 1
6 6 H 1.48494 * 109.46662 * 149.99963 * 3 2 1
7 7 C 1.37880 * 120.00064 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99923 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99882 * 359.97438 * 7 2 1
10 10 N 1.46895 * 109.46946 * 180.02562 * 9 7 2
11 11 C 1.46898 * 111.00217 * 170.00141 * 10 9 7
12 12 C 1.53235 * 109.34469 * 187.25342 * 11 10 9
13 13 N 1.47082 * 108.51997 * 306.16759 * 12 11 10
14 14 C 1.34777 * 120.88124 * 231.18713 * 13 12 11
15 15 O 1.21271 * 120.00115 * 0.02562 * 14 13 12
16 16 C 1.50702 * 119.99648 * 179.97438 * 14 13 12
17 17 C 1.50707 * 109.46722 * 179.97438 * 16 14 13
18 18 N 1.31887 * 119.61696 * 90.00497 * 17 16 14
19 19 C 1.31852 * 121.72439 * 180.02562 * 18 17 16
20 20 C 1.38222 * 120.76521 * 0.02562 * 19 18 17
21 21 C 1.38625 * 119.16079 * 359.97438 * 20 19 18
22 22 C 1.38176 * 119.61494 * 270.01997 * 17 16 14
23 23 C 1.50696 * 120.42062 * 0.02562 * 22 17 16
24 24 F 1.39897 * 109.47406 * 299.95424 * 23 22 17
25 25 F 1.39899 * 109.47281 * 59.95743 * 23 22 17
26 26 C 1.47083 * 118.23592 * 51.45446 * 13 12 11
27 27 C 1.46903 * 110.99816 * 294.30095 * 10 9 7
28 28 H 0.97002 * 120.00341 * 359.97438 * 1 2 3
29 29 H 1.08997 * 109.47019 * 60.00235 * 9 7 2
30 30 H 1.09005 * 109.46929 * 300.00188 * 9 7 2
31 31 H 1.08995 * 109.49342 * 67.28821 * 11 10 9
32 32 H 1.09007 * 109.49085 * 307.20970 * 11 10 9
33 33 H 1.08994 * 109.63255 * 186.45970 * 12 11 10
34 34 H 1.09001 * 109.63124 * 65.87547 * 12 11 10
35 35 H 1.08997 * 109.47557 * 59.99925 * 16 14 13
36 36 H 1.08997 * 109.47118 * 299.99858 * 16 14 13
37 37 H 1.07997 * 119.61479 * 179.97438 * 19 18 17
38 38 H 1.07998 * 120.42239 * 179.97438 * 20 19 18
39 39 H 1.08003 * 120.79030 * 179.72829 * 21 20 19
40 40 H 1.09006 * 109.47072 * 179.97438 * 23 22 17
41 41 H 1.09004 * 109.62796 * 68.25504 * 26 13 12
42 42 H 1.09003 * 109.63072 * 188.83205 * 26 13 12
43 43 H 1.09006 * 109.48954 * 292.70486 * 27 10 9
44 44 H 1.08994 * 109.49249 * 52.75921 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5466 1.4402 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 7 2.2056 -3.6157 -0.0005
11 6 1.5212 -4.8935 0.2376
12 6 2.5637 -6.0032 0.4104
13 7 3.4615 -5.9862 -0.7545
14 6 3.7118 -7.1123 -1.4514
15 8 3.1937 -8.1578 -1.1209
16 6 4.6346 -7.0721 -2.6422
17 6 4.7450 -8.4515 -3.2389
18 7 3.9004 -8.8237 -4.1811
19 6 3.9589 -10.0204 -4.7314
20 6 4.9167 -10.9348 -4.3351
21 6 5.8220 -10.5795 -3.3472
22 6 5.7298 -9.3118 -2.7924
23 6 6.6901 -8.8788 -1.7148
24 9 7.4025 -7.7558 -2.1488
25 9 5.9762 -8.5587 -0.5551
26 6 4.0837 -4.7089 -1.1350
27 6 2.9767 -3.6490 -1.2505
28 1 -0.4851 0.8400 0.0004
29 1 0.6240 -2.5567 -0.8903
30 1 0.6246 -2.5570 0.8897
31 1 0.8796 -5.1263 -0.6122
32 1 0.9160 -4.8191 1.1412
33 1 2.0632 -6.9694 0.4728
34 1 3.1394 -5.8265 1.3189
35 1 5.6212 -6.7333 -2.3261
36 1 4.2359 -6.3841 -3.3877
37 1 3.2497 -10.2896 -5.5001
38 1 4.9593 -11.9137 -4.7893
39 1 6.5784 -11.2748 -3.0144
40 1 7.3862 -9.6900 -1.5011
41 1 4.8027 -4.4102 -0.3722
42 1 4.5885 -4.8191 -2.0948
43 1 2.3147 -3.8992 -2.0796
44 1 3.4266 -2.6720 -1.4264
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001178436479.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:07:26
Heat of formation + Delta-G solvation = -83.216140 kcal
Electronic energy + Delta-G solvation = -29990.641082 eV
Core-core repulsion = 25579.035258 eV
Total energy + Delta-G solvation = -4411.605824 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-49.34052 -47.24172 -40.83091 -39.66487 -37.44012 -34.35668 -33.51812 -33.49679
-32.39862 -30.89575 -29.22345 -27.98784 -26.54025 -25.39328 -23.60174 -23.14386
-22.56961 -21.82417 -20.50736 -18.65428 -18.17208 -17.69475 -17.49648 -17.14029
-16.65746 -16.35598 -16.18855 -15.57595 -15.18494 -14.78300 -14.47254 -14.39719
-14.28372 -14.01254 -13.92619 -13.63916 -13.59817 -13.51184 -13.30540 -13.04801
-12.97731 -12.44779 -12.24671 -11.99496 -11.85820 -11.46429 -11.26541 -11.03377
-10.93954 -10.72728 -10.60990 -10.51307 -10.36313 -9.88600 -9.82827 -9.76321
-9.33057 -9.26068 -8.48900 -8.38395 -7.30352 -6.05193 -4.07228 0.52584
0.82116 2.78063 3.03199 3.29611 3.30220 3.36868 3.40499 3.41813
3.75793 3.89488 4.10677 4.32560 4.39843 4.45015 4.61278 4.73532
4.78474 4.82663 5.01319 5.03105 5.13492 5.28455 5.31550 5.42393
5.46183 5.57340 5.60943 5.66185 5.69399 5.81486 5.91102 6.08467
6.18725 6.32145 6.48548 6.49803 6.72874 7.23830 7.29943 7.57392
7.59787 7.75815 8.03108 8.13862 8.31142 8.49011 9.00065 9.57283
11.05642
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.020481 B = 0.002574 C = 0.002519
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1366.813222 B =10876.549871 C =11114.992569
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.055 3.945
3 Si 0.898 3.102
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.272 1.272
7 C -0.509 4.509
8 H 0.064 0.936
9 C 0.194 3.806
10 N -0.535 5.535
11 C 0.041 3.959
12 C 0.121 3.879
13 N -0.606 5.606
14 C 0.530 3.470
15 O -0.542 6.542
16 C -0.114 4.114
17 C 0.201 3.799
18 N -0.474 5.474
19 C 0.126 3.874
20 C -0.181 4.181
21 C -0.039 4.039
22 C -0.216 4.216
23 C 0.316 3.684
24 F -0.196 7.196
25 F -0.186 7.186
26 C 0.107 3.893
27 C 0.050 3.950
28 H 0.262 0.738
29 H -0.009 1.009
30 H 0.032 0.968
31 H 0.026 0.974
32 H 0.081 0.919
33 H 0.087 0.913
34 H 0.073 0.927
35 H 0.117 0.883
36 H 0.118 0.882
37 H 0.163 0.837
38 H 0.142 0.858
39 H 0.142 0.858
40 H 0.120 0.880
41 H 0.078 0.922
42 H 0.079 0.921
43 H 0.026 0.974
44 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.443 -22.197 -8.086 27.689
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.146 4.146
3 Si 0.726 3.274
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.197 1.197
7 C -0.548 4.548
8 H 0.082 0.918
9 C 0.069 3.931
10 N -0.261 5.261
11 C -0.088 4.088
12 C -0.001 4.001
13 N -0.339 5.339
14 C 0.317 3.683
15 O -0.419 6.419
16 C -0.154 4.154
17 C 0.063 3.937
18 N -0.182 5.182
19 C -0.031 4.031
20 C -0.201 4.201
21 C -0.065 4.065
22 C -0.218 4.218
23 C 0.261 3.739
24 F -0.177 7.177
25 F -0.167 7.167
26 C -0.016 4.016
27 C -0.079 4.079
28 H 0.071 0.929
29 H 0.009 0.991
30 H 0.050 0.950
31 H 0.045 0.955
32 H 0.099 0.901
33 H 0.105 0.895
34 H 0.091 0.909
35 H 0.135 0.865
36 H 0.136 0.864
37 H 0.180 0.820
38 H 0.160 0.840
39 H 0.160 0.840
40 H 0.137 0.863
41 H 0.097 0.903
42 H 0.097 0.903
43 H 0.044 0.956
44 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 13.679 -21.915 -7.773 26.978
hybrid contribution 0.350 0.406 -0.405 0.672
sum 14.030 -21.509 -8.178 26.951
Atomic orbital electron populations
1.69956 1.06109 1.26851 1.50804 1.24999 0.94855 0.99360 0.95384
0.86498 0.79820 0.83078 0.78028 1.20732 1.21273 1.19721 1.21140
0.93471 0.89857 1.50306 0.91773 1.19725 0.90005 0.87166 0.96228
1.62075 1.28076 1.02723 1.33188 1.22407 0.94968 0.90541 1.00908
1.21734 0.91614 0.99418 0.87383 1.48128 1.46947 1.08415 1.30431
1.19908 0.81628 0.83540 0.83242 1.90668 1.51986 1.30055 1.69219
1.20918 1.02640 0.94115 0.97708 1.20379 0.88480 0.94516 0.90369
1.67575 1.23224 1.18489 1.08934 1.22952 0.95525 0.88276 0.96376
1.22125 0.97097 1.01687 0.99201 1.21348 0.97500 0.93951 0.93683
1.21140 1.01386 0.97420 1.01899 1.20237 0.87503 0.85893 0.80221
1.92982 1.78913 1.55805 1.90048 1.93108 1.79810 1.93846 1.49959
1.22146 0.96261 0.82681 1.00486 1.22414 0.95064 0.98985 0.91446
0.92874 0.99102 0.95035 0.95540 0.90074 0.89498 0.90918 0.86536
0.86433 0.82026 0.83971 0.83991 0.86271 0.90344 0.90315 0.95593
0.88416
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16
2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16
3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16
4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16
7 C -0.51 -13.93 8.41 -34.44 -0.29 -14.22 16
8 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16
9 C 0.19 4.97 4.72 -4.98 -0.02 4.95 16
10 N -0.54 -11.30 4.62 -235.47 -1.09 -12.39 16
11 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16
12 C 0.12 1.99 6.60 -3.60 -0.02 1.97 16
13 N -0.61 -9.69 3.00 -172.18 -0.52 -10.21 16
14 C 0.53 8.51 6.41 -10.98 -0.07 8.44 16
15 O -0.54 -10.26 15.19 5.57 0.08 -10.17 16
16 C -0.11 -1.47 3.67 -29.03 -0.11 -1.58 16
17 C 0.20 2.58 5.25 -82.59 -0.43 2.15 16
18 N -0.47 -6.15 10.27 -9.47 -0.10 -6.25 16
19 C 0.13 1.18 11.18 -17.55 -0.20 0.98 16
20 C -0.18 -1.29 10.11 -39.44 -0.40 -1.69 16
21 C -0.04 -0.29 9.81 -39.28 -0.39 -0.68 16
22 C -0.22 -2.23 5.38 -104.48 -0.56 -2.80 16
23 C 0.32 2.92 4.95 36.00 0.18 3.10 16
24 F -0.20 -1.96 15.37 2.25 0.03 -1.93 16
25 F -0.19 -2.38 15.07 2.25 0.03 -2.34 16
26 C 0.11 1.58 6.53 -3.36 -0.02 1.56 16
27 C 0.05 0.93 5.47 -3.46 -0.02 0.91 16
28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
29 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16
30 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16
31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.08 1.45 7.99 -51.92 -0.41 1.04 16
33 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16
34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16
35 H 0.12 1.35 5.36 -51.93 -0.28 1.07 16
36 H 0.12 1.41 7.67 -51.93 -0.40 1.02 16
37 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16
38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16
39 H 0.14 0.53 8.00 -52.48 -0.42 0.11 16
40 H 0.12 0.59 7.93 -51.93 -0.41 0.18 16
41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
42 H 0.08 0.93 6.02 -51.93 -0.31 0.62 16
43 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16
44 H 0.10 1.89 6.67 -51.93 -0.35 1.54 16
LS Contribution 364.17 15.07 5.49 5.49
Total: -1.00 -34.77 364.17 -8.65 -43.42
By element:
Atomic # 1 Polarization: 4.43 SS G_CDS: -5.83 Total: -1.40 kcal
Atomic # 6 Polarization: 7.76 SS G_CDS: -2.47 Total: 5.29 kcal
Atomic # 7 Polarization: -53.62 SS G_CDS: -0.97 Total: -54.58 kcal
Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.17 kcal
Atomic # 9 Polarization: -4.34 SS G_CDS: 0.07 Total: -4.27 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -34.77 -8.65 -43.42 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001178436479.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.798 kcal
(2) G-P(sol) polarization free energy of solvation -34.772 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.569 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.216 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds