Wall clock time and date at job start Tue Mar 31 2020 22:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81401 * 102.99901 * 2 1 4 4 C 1.50702 * 109.46726 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00608 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99526 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63188 * 359.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 233.51696 * 7 6 4 9 9 C 1.53070 * 109.29524 * 305.57804 * 8 7 6 10 10 C 1.53039 * 109.65812 * 61.15209 * 9 8 7 11 11 H 1.09001 * 109.49731 * 58.65147 * 10 9 8 12 12 N 1.46502 * 109.52382 * 178.73155 * 10 9 8 13 13 C 1.35311 * 125.86915 * 84.86158 * 12 10 9 14 14 C 1.35346 * 106.17942 * 180.02562 * 13 12 10 15 15 C 1.50696 * 126.75516 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47549 * 94.99358 * 15 14 13 17 17 C 1.36936 * 119.99906 * 179.97438 * 16 15 14 18 18 H 1.07990 * 120.00658 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99416 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00840 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47203 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47468 * 119.99621 * 21 19 17 24 24 H 1.48508 * 109.47195 * 239.99793 * 21 19 17 25 25 N 1.33777 * 106.49676 * 359.97438 * 14 13 12 26 26 N 1.28643 * 108.88103 * 359.73883 * 25 14 13 27 27 C 1.46928 * 120.62829 * 179.97438 * 6 4 3 28 28 H 1.08998 * 109.47405 * 300.00494 * 1 2 3 29 29 H 1.09002 * 109.46962 * 60.00023 * 1 2 3 30 30 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47210 * 59.99983 * 3 2 1 32 32 H 1.08994 * 109.47058 * 299.99546 * 3 2 1 33 33 H 1.09002 * 109.58751 * 353.37646 * 7 6 4 34 34 H 1.08996 * 109.58750 * 113.65831 * 7 6 4 35 35 H 1.08997 * 109.50046 * 65.38734 * 8 7 6 36 36 H 1.09003 * 109.49733 * 185.48713 * 8 7 6 37 37 H 1.09007 * 109.35101 * 301.12962 * 9 8 7 38 38 H 1.09000 * 109.44413 * 181.23506 * 9 8 7 39 39 H 1.08003 * 126.91138 * 0.02562 * 13 12 10 40 40 H 1.09007 * 109.47206 * 214.99971 * 15 14 13 41 41 H 1.09007 * 109.47040 * 334.99084 * 15 14 13 42 42 H 0.96998 * 119.99711 * 0.02562 * 16 15 14 43 43 H 0.96995 * 120.00607 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58787 * 246.20220 * 27 6 4 45 45 H 1.08999 * 109.58470 * 6.62573 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 0.0006 5 8 4.4404 0.9621 0.0015 6 7 4.2574 3.1731 0.0013 7 6 3.3972 4.3641 0.0008 8 6 3.8063 5.2710 -1.1641 9 6 5.3036 5.5736 -1.0678 10 6 6.0996 4.2700 -1.1639 11 1 5.8712 3.7729 -2.1067 12 7 7.5331 4.5659 -1.1018 13 6 8.2616 4.7251 0.0272 14 6 9.5280 4.9834 -0.3744 15 6 10.7210 5.2361 0.5110 16 7 11.4550 3.9841 0.7106 17 6 12.5840 3.9684 1.4854 18 1 12.9331 4.8787 1.9496 19 6 13.2797 2.7820 1.6741 20 7 12.8546 1.6725 1.1080 21 14 14.8194 2.7603 2.7315 22 1 15.0838 4.1269 3.2491 23 1 14.6244 1.8282 3.8710 24 1 15.9746 2.3088 1.9148 25 7 9.5127 4.9692 -1.7120 26 7 8.3171 4.7133 -2.1119 27 6 5.7154 3.3547 0.0025 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8031 2.2371 0.8899 32 1 1.8031 2.2371 -0.8900 33 1 2.3564 4.0630 -0.1185 34 1 3.5165 4.9014 0.9415 35 1 3.5990 4.7668 -2.1080 36 1 3.2409 6.2018 -1.1165 37 1 5.5137 6.0579 -0.1141 38 1 5.5930 6.2367 -1.8832 39 1 7.9044 4.6594 1.0444 40 1 11.3750 5.9694 0.0390 41 1 10.3838 5.6173 1.4750 42 1 11.1416 3.1664 0.2934 43 1 13.3405 0.8435 1.2401 44 1 6.0261 3.8109 0.9424 45 1 6.2042 2.3877 -0.1158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185856843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:59 Heat of formation + Delta-G solvation = 89.722192 kcal Electronic energy + Delta-G solvation = -26754.927004 eV Core-core repulsion = 22936.953487 eV Total energy + Delta-G solvation = -3817.973517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.03672 -40.71486 -38.13229 -35.26448 -34.44568 -32.85511 -31.96005 -31.30006 -29.90415 -29.76697 -29.12612 -26.06783 -25.77727 -24.41286 -22.78714 -22.43066 -21.11528 -20.63170 -19.56566 -18.03526 -17.38219 -17.12057 -16.86432 -16.20968 -16.12291 -15.76602 -15.24297 -14.81757 -14.60037 -14.56708 -14.38687 -14.21044 -13.86881 -13.75114 -13.66090 -13.50106 -13.09288 -12.92045 -12.76472 -12.60327 -12.36301 -11.84560 -11.80856 -11.64452 -11.47626 -11.22485 -10.85202 -10.79104 -10.51341 -10.42234 -10.34782 -10.02837 -9.88036 -9.69591 -9.30358 -8.85568 -8.81554 -8.11148 -6.87274 -5.69140 -2.99149 0.94024 1.80866 2.00372 2.04385 2.11177 2.64292 2.93577 3.48971 3.53955 3.56784 3.75281 3.92435 4.10455 4.13242 4.22183 4.37047 4.50278 4.53652 4.62439 4.65028 4.65825 4.69911 4.72608 4.88698 5.03140 5.10223 5.13355 5.21030 5.28326 5.31482 5.44470 5.51249 5.57974 5.67068 5.74376 5.87681 6.21650 6.42583 6.67582 6.68085 6.76819 6.81758 7.56851 7.75620 8.47703 8.85542 9.59470 10.15414 10.51170 11.53549 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.002353 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.380348 B =11897.904591 C =13516.062096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.181 6.181 3 C -0.127 4.127 4 C 0.533 3.467 5 O -0.504 6.504 6 N -0.608 5.608 7 C 0.101 3.899 8 C -0.130 4.130 9 C -0.131 4.131 10 C 0.138 3.862 11 H 0.115 0.885 12 N -0.294 5.294 13 C -0.046 4.046 14 C -0.002 4.002 15 C 0.233 3.767 16 N -0.726 5.726 17 C -0.240 4.240 18 H 0.074 0.926 19 C -0.014 4.014 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 N -0.252 5.252 26 N -0.093 5.093 27 C 0.105 3.895 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.187 0.813 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.290 6.992 -2.031 34.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.044 5.956 3 C -0.278 4.278 4 C 0.319 3.681 5 O -0.377 6.377 6 N -0.344 5.344 7 C -0.022 4.022 8 C -0.169 4.169 9 C -0.170 4.170 10 C 0.034 3.966 11 H 0.133 0.867 12 N -0.088 5.088 13 C -0.196 4.196 14 C -0.140 4.140 15 C 0.104 3.896 16 N -0.371 5.371 17 C -0.371 4.371 18 H 0.092 0.908 19 C -0.210 4.210 20 N -0.579 5.579 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 N -0.120 5.120 26 N -0.072 5.072 27 C -0.019 4.019 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -31.993 5.632 -3.468 32.670 hybrid contribution -0.403 0.754 1.545 1.766 sum -32.396 6.386 -1.923 33.075 Atomic orbital electron populations 1.23551 0.95724 1.06968 1.04862 1.87779 1.04643 1.05235 1.97981 1.23542 0.97147 1.00023 1.07073 1.19714 0.89156 0.82759 0.76487 1.90830 1.61780 1.37774 1.47353 1.47866 1.06161 1.05775 1.74578 1.21922 0.94541 0.86078 0.99670 1.21916 0.95302 1.00612 0.99092 1.21968 0.94606 0.95939 1.04452 1.21813 0.75012 0.97491 1.02297 0.86746 1.47200 1.09306 1.47024 1.05305 1.23319 0.92743 1.09887 0.93669 1.22473 0.95649 1.04329 0.91539 1.18947 0.86779 0.91213 0.92708 1.42316 1.29464 1.05152 1.60132 1.19264 1.01145 0.94586 1.22085 0.90836 1.24775 0.99521 0.95641 1.01047 1.69691 1.41155 0.99007 1.48026 0.86092 0.83040 0.77232 0.79650 1.20485 1.21915 1.21870 1.75109 1.10035 1.15491 1.11333 1.78288 0.96249 1.19171 1.13468 1.21860 0.80612 1.02006 0.97393 0.90432 0.90446 0.87590 0.86985 0.87003 0.89183 0.90232 0.90632 0.89130 0.90265 0.89875 0.79622 0.94344 0.94527 0.78067 0.93527 0.89565 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 10.76 101.05 1.09 0.48 16 2 S -0.18 -1.58 21.52 -107.50 -2.31 -3.89 16 3 C -0.13 -0.75 4.77 36.01 0.17 -0.58 16 4 C 0.53 5.13 7.72 -10.98 -0.08 5.05 16 5 O -0.50 -7.48 15.28 5.56 0.08 -7.40 16 6 N -0.61 -4.47 2.97 -172.79 -0.51 -4.98 16 7 C 0.10 0.33 6.34 -3.71 -0.02 0.31 16 8 C -0.13 -0.44 6.09 -26.59 -0.16 -0.60 16 9 C -0.13 -0.83 5.49 -26.67 -0.15 -0.98 16 10 C 0.14 1.33 3.28 -67.83 -0.22 1.10 16 11 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 12 N -0.29 -4.18 3.26 -54.66 -0.18 -4.36 16 13 C -0.05 -0.70 10.61 -17.05 -0.18 -0.88 16 14 C 0.00 -0.04 6.61 -82.78 -0.55 -0.59 16 15 C 0.23 4.97 6.82 -5.20 -0.04 4.94 16 16 N -0.73 -19.42 5.59 -61.09 -0.34 -19.76 16 17 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 18 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -29.39 13.06 55.49 0.72 -28.66 16 21 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 N -0.25 -5.25 12.41 33.29 0.41 -4.84 16 26 N -0.09 -1.69 13.17 60.35 0.79 -0.89 16 27 C 0.11 1.00 5.47 -3.73 -0.02 0.98 16 28 H 0.08 0.24 8.14 -51.92 -0.42 -0.19 16 29 H 0.08 0.23 8.14 -51.92 -0.42 -0.19 16 30 H 0.11 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.11 0.39 7.94 -51.93 -0.41 -0.02 16 32 H 0.11 0.38 7.69 -51.93 -0.40 -0.02 16 33 H 0.09 0.09 5.93 -51.93 -0.31 -0.22 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.19 2.20 7.18 -52.48 -0.38 1.82 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.39 11.20 7.66 -40.82 -0.31 10.89 16 43 H 0.25 7.74 8.31 -40.82 -0.34 7.41 16 44 H 0.09 0.73 6.92 -51.93 -0.36 0.37 16 45 H 0.11 1.42 7.01 -51.93 -0.36 1.05 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -38.54 383.59 -7.71 -46.25 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.73 Total: 3.14 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.41 Total: 1.68 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: 0.90 Total: -63.49 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.08 Total: -7.40 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.31 Total: -3.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.54 -7.71 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185856843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.974 kcal (2) G-P(sol) polarization free energy of solvation -38.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds