Wall clock time and date at job start Tue Mar 31 2020 22:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81401 * 102.99901 * 2 1 4 4 C 1.50702 * 109.46726 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00608 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99526 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63188 * 359.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 233.51696 * 7 6 4 9 9 C 1.53070 * 109.29524 * 305.57804 * 8 7 6 10 10 C 1.53039 * 109.65812 * 61.15209 * 9 8 7 11 11 H 1.09001 * 109.49731 * 58.65147 * 10 9 8 12 12 N 1.46502 * 109.52382 * 178.73155 * 10 9 8 13 13 C 1.35311 * 125.86915 * 84.86158 * 12 10 9 14 14 C 1.35346 * 106.17942 * 180.02562 * 13 12 10 15 15 C 1.50696 * 126.75516 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47549 * 94.99358 * 15 14 13 17 17 C 1.36936 * 119.99906 * 179.97438 * 16 15 14 18 18 H 1.07990 * 120.00658 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99416 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00840 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47203 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47468 * 119.99621 * 21 19 17 24 24 H 1.48508 * 109.47195 * 239.99793 * 21 19 17 25 25 N 1.33777 * 106.49676 * 359.97438 * 14 13 12 26 26 N 1.28643 * 108.88103 * 359.73883 * 25 14 13 27 27 C 1.46928 * 120.62829 * 179.97438 * 6 4 3 28 28 H 1.08998 * 109.47405 * 300.00494 * 1 2 3 29 29 H 1.09002 * 109.46962 * 60.00023 * 1 2 3 30 30 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47210 * 59.99983 * 3 2 1 32 32 H 1.08994 * 109.47058 * 299.99546 * 3 2 1 33 33 H 1.09002 * 109.58751 * 353.37646 * 7 6 4 34 34 H 1.08996 * 109.58750 * 113.65831 * 7 6 4 35 35 H 1.08997 * 109.50046 * 65.38734 * 8 7 6 36 36 H 1.09003 * 109.49733 * 185.48713 * 8 7 6 37 37 H 1.09007 * 109.35101 * 301.12962 * 9 8 7 38 38 H 1.09000 * 109.44413 * 181.23506 * 9 8 7 39 39 H 1.08003 * 126.91138 * 0.02562 * 13 12 10 40 40 H 1.09007 * 109.47206 * 214.99971 * 15 14 13 41 41 H 1.09007 * 109.47040 * 334.99084 * 15 14 13 42 42 H 0.96998 * 119.99711 * 0.02562 * 16 15 14 43 43 H 0.96995 * 120.00607 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58787 * 246.20220 * 27 6 4 45 45 H 1.08999 * 109.58470 * 6.62573 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 0.0006 5 8 4.4404 0.9621 0.0015 6 7 4.2574 3.1731 0.0013 7 6 3.3972 4.3641 0.0008 8 6 3.8063 5.2710 -1.1641 9 6 5.3036 5.5736 -1.0678 10 6 6.0996 4.2700 -1.1639 11 1 5.8712 3.7729 -2.1067 12 7 7.5331 4.5659 -1.1018 13 6 8.2616 4.7251 0.0272 14 6 9.5280 4.9834 -0.3744 15 6 10.7210 5.2361 0.5110 16 7 11.4550 3.9841 0.7106 17 6 12.5840 3.9684 1.4854 18 1 12.9331 4.8787 1.9496 19 6 13.2797 2.7820 1.6741 20 7 12.8546 1.6725 1.1080 21 14 14.8194 2.7603 2.7315 22 1 15.0838 4.1269 3.2491 23 1 14.6244 1.8282 3.8710 24 1 15.9746 2.3088 1.9148 25 7 9.5127 4.9692 -1.7120 26 7 8.3171 4.7133 -2.1119 27 6 5.7154 3.3547 0.0025 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8031 2.2371 0.8899 32 1 1.8031 2.2371 -0.8900 33 1 2.3564 4.0630 -0.1185 34 1 3.5165 4.9014 0.9415 35 1 3.5990 4.7668 -2.1080 36 1 3.2409 6.2018 -1.1165 37 1 5.5137 6.0579 -0.1141 38 1 5.5930 6.2367 -1.8832 39 1 7.9044 4.6594 1.0444 40 1 11.3750 5.9694 0.0390 41 1 10.3838 5.6173 1.4750 42 1 11.1416 3.1664 0.2934 43 1 13.3405 0.8435 1.2401 44 1 6.0261 3.8109 0.9424 45 1 6.2042 2.3877 -0.1158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185856843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:58 Heat of formation + Delta-G solvation = 60.948778 kcal Electronic energy + Delta-G solvation = -26756.174713 eV Core-core repulsion = 22936.953487 eV Total energy + Delta-G solvation = -3819.221226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.34979 -41.39806 -38.89498 -36.87072 -35.72960 -33.82141 -33.42540 -32.11663 -31.63058 -30.43507 -29.52453 -27.72761 -26.48367 -25.35230 -24.75271 -23.11883 -22.37827 -21.78751 -20.18536 -19.37756 -18.72446 -18.07584 -17.69355 -17.34999 -16.81353 -16.60246 -16.42823 -16.07783 -15.75796 -15.53258 -15.31358 -15.07449 -14.82619 -14.62291 -14.46485 -14.37203 -14.16319 -13.96659 -13.71186 -13.44346 -13.16939 -13.08774 -12.82270 -12.70700 -12.57016 -12.39006 -12.20895 -12.04425 -11.98728 -11.87805 -11.83533 -11.19727 -11.03156 -10.97804 -10.86771 -10.25843 -9.93524 -9.03296 -8.73265 -7.93864 -5.24915 0.44606 0.56571 1.14034 1.39450 1.42636 1.49821 1.51094 1.61367 1.63575 1.90790 2.58909 3.04870 3.24045 3.37339 3.46570 3.50545 3.65208 3.85323 3.88681 3.99274 4.02481 4.13639 4.18540 4.21255 4.28487 4.39290 4.40240 4.40789 4.45627 4.54518 4.59656 4.72991 4.84985 4.91504 4.94471 4.96260 5.10885 5.16038 5.20633 5.27029 5.50638 5.62834 6.10684 6.25302 6.91588 7.31713 7.47099 8.03242 8.28836 9.30396 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.002353 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.380348 B =11897.904591 C =13516.062096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.288 6.288 3 C -0.101 4.101 4 C 0.523 3.477 5 O -0.570 6.570 6 N -0.599 5.599 7 C 0.094 3.906 8 C -0.122 4.122 9 C -0.124 4.124 10 C 0.133 3.867 11 H 0.106 0.894 12 N -0.278 5.278 13 C -0.021 4.021 14 C -0.034 4.034 15 C 0.235 3.765 16 N -0.741 5.741 17 C -0.241 4.241 18 H 0.088 0.912 19 C -0.082 4.082 20 N -0.975 5.975 21 Si 0.981 3.019 22 H -0.258 1.258 23 H -0.292 1.292 24 H -0.297 1.297 25 N -0.297 5.297 26 N -0.112 5.112 27 C 0.109 3.891 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.224 0.776 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.369 0.631 43 H 0.250 0.750 44 H 0.102 0.898 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.646 9.702 -0.542 37.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.064 6.064 3 C -0.252 4.252 4 C 0.312 3.688 5 O -0.448 6.448 6 N -0.333 5.333 7 C -0.027 4.027 8 C -0.160 4.160 9 C -0.163 4.163 10 C 0.031 3.969 11 H 0.124 0.876 12 N -0.072 5.072 13 C -0.172 4.172 14 C -0.173 4.173 15 C 0.108 3.892 16 N -0.383 5.383 17 C -0.372 4.372 18 H 0.106 0.894 19 C -0.274 4.274 20 N -0.626 5.626 21 Si 0.809 3.191 22 H -0.182 1.182 23 H -0.219 1.219 24 H -0.225 1.225 25 N -0.163 5.163 26 N -0.091 5.091 27 C -0.016 4.016 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.241 0.759 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.200 0.800 43 H 0.059 0.941 44 H 0.120 0.880 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -35.412 8.441 -1.996 36.459 hybrid contribution 0.477 -0.020 1.039 1.143 sum -34.935 8.421 -0.957 35.949 Atomic orbital electron populations 1.23533 0.90799 1.07610 1.06559 1.88192 1.10166 1.09696 1.98307 1.23504 0.94137 0.97330 1.10182 1.20461 0.90653 0.82444 0.75269 1.90811 1.63521 1.40069 1.50424 1.47977 1.05427 1.06674 1.73270 1.22350 0.95320 0.84381 1.00636 1.21942 0.92889 1.02097 0.99113 1.22004 0.96178 0.93335 1.04777 1.22233 0.72759 0.99799 1.02101 0.87583 1.47574 1.10672 1.44599 1.04336 1.23711 0.91396 1.06953 0.95186 1.22318 0.96598 1.07137 0.91218 1.18997 0.87147 0.88786 0.94303 1.42550 1.29681 1.06327 1.59758 1.19760 1.01352 0.94925 1.21178 0.89442 1.25706 1.03158 0.95394 1.03118 1.69878 1.42862 0.99565 1.50321 0.84963 0.78561 0.78027 0.77515 1.18225 1.21939 1.22493 1.75032 1.11616 1.17219 1.12469 1.78179 0.96077 1.20193 1.14624 1.21659 0.82343 0.99778 0.97827 0.88647 0.88672 0.87549 0.83578 0.83652 0.85865 0.88201 0.90766 0.85948 0.89053 0.90729 0.75946 0.95103 0.91670 0.80024 0.94143 0.87984 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.76 113.37 1.22 0.52 16 2 S -0.29 -4.90 21.52 -56.49 -1.22 -6.11 16 3 C -0.10 -0.91 4.77 71.24 0.34 -0.57 16 4 C 0.52 9.56 7.72 87.66 0.68 10.24 16 5 O -0.57 -17.87 15.28 -3.03 -0.05 -17.92 16 6 N -0.60 -7.45 2.97 -818.98 -2.44 -9.89 16 7 C 0.09 0.15 6.34 86.36 0.55 0.70 16 8 C -0.12 -0.26 6.09 30.68 0.19 -0.08 16 9 C -0.12 -1.20 5.49 30.63 0.17 -1.04 16 10 C 0.13 2.42 3.28 45.06 0.15 2.57 16 11 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 12 N -0.28 -7.80 3.26 -326.86 -1.06 -8.86 16 13 C -0.02 -0.61 10.61 83.49 0.89 0.27 16 14 C -0.03 -1.33 6.61 41.59 0.28 -1.05 16 15 C 0.24 10.06 6.82 85.63 0.58 10.65 16 16 N -0.74 -40.29 5.59 -347.18 -1.94 -42.23 16 17 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 18 H 0.09 4.69 7.83 -2.92 -0.02 4.67 16 19 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 20 N -0.98 -63.40 13.06 21.65 0.28 -63.12 16 21 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 25 N -0.30 -12.74 12.41 -48.60 -0.60 -13.34 16 26 N -0.11 -4.16 13.17 37.02 0.49 -3.67 16 27 C 0.11 1.98 5.47 86.35 0.47 2.45 16 28 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.15 0.33 7.94 -2.39 -0.02 0.31 16 32 H 0.15 0.33 7.69 -2.39 -0.02 0.31 16 33 H 0.12 -0.54 5.93 -2.39 -0.01 -0.55 16 34 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.22 4.67 7.18 -2.91 -0.02 4.65 16 40 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.37 22.21 7.66 -92.71 -0.71 21.50 16 43 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.10 1.50 6.92 -2.39 -0.02 1.49 16 45 H 0.07 1.87 7.01 -2.39 -0.02 1.86 16 Total: -1.00 -91.59 383.59 2.60 -88.99 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.30 Total: 19.31 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.81 Total: 7.17 kcal Atomic # 7 Polarization: -135.84 SS G_CDS: -5.28 Total: -141.12 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.05 Total: -17.92 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -1.22 Total: -6.11 kcal Total: -91.59 2.60 -88.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185856843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.939 kcal (2) G-P(sol) polarization free energy of solvation -91.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds