Wall clock time and date at job start Tue Mar 31 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 C 1.50699 * 109.47054 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00041 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.62856 * 359.71632 * 6 4 3 8 8 C 1.53620 * 108.53888 * 126.37107 * 7 6 4 9 9 C 1.53039 * 109.24437 * 54.85908 * 8 7 6 10 10 C 1.53041 * 109.53623 * 298.50850 * 9 8 7 11 11 H 1.09001 * 109.49530 * 301.41126 * 10 9 8 12 12 N 1.46501 * 109.49921 * 181.31362 * 10 9 8 13 13 C 1.35307 * 125.87262 * 274.87699 * 12 10 9 14 14 C 1.35346 * 106.18019 * 179.90169 * 13 12 10 15 15 C 1.50694 * 126.75486 * 180.12572 * 14 13 12 16 16 N 1.46505 * 109.47217 * 95.24771 * 15 14 13 17 17 C 1.36938 * 120.00067 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99542 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99783 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00405 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99552 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47140 * 60.00601 * 21 19 17 23 23 H 1.48501 * 109.46846 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47473 * 299.99865 * 21 19 17 25 25 N 1.33778 * 106.49567 * 0.35283 * 14 13 12 26 26 N 1.28640 * 108.88263 * 359.77179 * 25 14 13 27 27 C 1.46924 * 120.63200 * 179.97438 * 6 4 3 28 28 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 30 30 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 31 31 H 1.09000 * 109.47070 * 300.00061 * 3 2 1 32 32 H 1.09001 * 109.46593 * 60.00058 * 3 2 1 33 33 H 1.09001 * 109.58220 * 246.20541 * 7 6 4 34 34 H 1.08996 * 109.58731 * 6.62764 * 7 6 4 35 35 H 1.08997 * 109.63627 * 294.86360 * 8 7 6 36 36 H 1.08999 * 109.45494 * 174.73827 * 8 7 6 37 37 H 1.09002 * 109.46507 * 178.48695 * 9 8 7 38 38 H 1.09004 * 109.46249 * 58.52580 * 9 8 7 39 39 H 1.08005 * 126.90800 * 0.02562 * 13 12 10 40 40 H 1.09006 * 109.47347 * 215.24425 * 15 14 13 41 41 H 1.08994 * 109.47267 * 335.24788 * 15 14 13 42 42 H 0.96998 * 119.99899 * 0.02562 * 16 15 14 43 43 H 0.96993 * 119.99743 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.58588 * 353.37383 * 27 6 4 45 45 H 1.08999 * 109.58627 * 113.79225 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 8 4.4404 0.9620 0.0015 6 7 4.2575 3.1730 0.0013 7 6 3.3972 4.3641 -0.0049 8 6 3.8056 5.2677 1.1684 9 6 5.3022 5.5732 1.0726 10 6 6.0979 4.2696 1.1695 11 1 5.8681 3.7723 2.1118 12 7 7.5314 4.5660 1.1092 13 6 8.2622 4.7208 -0.0189 14 6 9.5273 4.9832 0.3843 15 6 10.7213 5.2364 -0.4995 16 7 10.8997 6.6796 -0.6777 17 6 11.9289 7.1525 -1.4473 18 1 12.6088 6.4615 -1.9232 19 6 12.0975 8.5199 -1.6164 20 7 11.2685 9.3620 -1.0368 21 14 13.5011 9.1649 -2.6669 22 1 13.3618 8.6466 -4.0516 23 1 13.4625 10.6492 -2.6872 24 1 14.7951 8.7117 -2.0965 25 7 9.5104 4.9685 1.7219 26 7 8.3131 4.7186 2.1204 27 6 5.7155 3.3546 0.0025 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8031 2.2371 -0.8900 32 1 1.8031 2.2370 0.8900 33 1 3.5238 4.9013 -0.9448 34 1 2.3558 4.0632 0.1090 35 1 3.5974 4.7610 2.1107 36 1 3.2407 6.1987 1.1233 37 1 5.5905 6.2362 1.8884 38 1 5.5136 6.0577 0.1193 39 1 7.9071 4.6511 -1.0365 40 1 11.6129 4.8147 -0.0355 41 1 10.5606 4.7677 -1.4703 42 1 10.2892 7.3002 -0.2499 43 1 11.3867 10.3174 -1.1547 44 1 6.2041 2.3875 0.1212 45 1 6.0276 3.8111 -0.9369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185856847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:02 Heat of formation + Delta-G solvation = 88.993177 kcal Electronic energy + Delta-G solvation = -26687.666061 eV Core-core repulsion = 22869.660931 eV Total energy + Delta-G solvation = -3818.005130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.03709 -40.75006 -38.14347 -35.27565 -34.46322 -32.83013 -31.97806 -31.32946 -29.91518 -29.78413 -29.15876 -26.07451 -25.77795 -24.41962 -22.80955 -22.41092 -21.13284 -20.61828 -19.58916 -18.06806 -17.43374 -17.13507 -16.88494 -16.18249 -16.17600 -15.80727 -15.21364 -14.84015 -14.70137 -14.44356 -14.41865 -14.24487 -13.90768 -13.78710 -13.64805 -13.48610 -13.12102 -12.95858 -12.80423 -12.61067 -12.37844 -11.87606 -11.74537 -11.59887 -11.47631 -11.21415 -10.88567 -10.78075 -10.55742 -10.47521 -10.38398 -10.11230 -9.88610 -9.70795 -9.33479 -8.86793 -8.81956 -8.16804 -6.89959 -5.72425 -3.01820 0.89038 1.81495 1.94795 1.99022 2.07413 2.64189 2.93111 3.47506 3.51712 3.53025 3.71869 3.92056 4.11645 4.16792 4.24798 4.33848 4.49609 4.51142 4.58589 4.61156 4.63694 4.71228 4.73667 4.91077 5.05240 5.10562 5.14028 5.17119 5.28480 5.31158 5.47452 5.51977 5.64804 5.66393 5.71258 5.87580 6.19599 6.42429 6.63621 6.68426 6.76734 6.81773 7.50069 7.72533 8.44968 8.85531 9.56713 10.12524 10.48731 11.50312 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.001984 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.078091 B =14111.132144 C =14158.380797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.183 6.183 3 C -0.127 4.127 4 C 0.535 3.465 5 O -0.510 6.510 6 N -0.607 5.607 7 C 0.100 3.900 8 C -0.130 4.130 9 C -0.134 4.134 10 C 0.138 3.862 11 H 0.114 0.886 12 N -0.294 5.294 13 C -0.046 4.046 14 C -0.002 4.002 15 C 0.232 3.768 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.073 0.927 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.285 1.285 25 N -0.252 5.252 26 N -0.093 5.093 27 C 0.106 3.894 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.187 0.813 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.108 0.892 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.942 -14.128 1.815 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.041 5.959 3 C -0.278 4.278 4 C 0.321 3.679 5 O -0.384 6.384 6 N -0.342 5.342 7 C -0.023 4.023 8 C -0.169 4.169 9 C -0.173 4.173 10 C 0.034 3.966 11 H 0.132 0.868 12 N -0.088 5.088 13 C -0.196 4.196 14 C -0.140 4.140 15 C 0.103 3.897 16 N -0.370 5.370 17 C -0.370 4.370 18 H 0.091 0.909 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.741 3.259 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.212 1.212 25 N -0.120 5.120 26 N -0.072 5.072 27 C -0.018 4.018 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.126 0.874 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.641 -15.528 3.258 31.871 hybrid contribution -0.632 1.933 -1.543 2.552 sum -28.273 -13.595 1.715 31.419 Atomic orbital electron populations 1.23553 0.95581 1.06969 1.04948 1.87684 1.04822 1.05373 1.97999 1.23549 0.97145 0.99928 1.07195 1.19697 0.89155 0.82717 0.76338 1.90797 1.61861 1.37848 1.47879 1.47877 1.06212 1.05852 1.74299 1.22054 0.94445 0.85938 0.99837 1.21978 0.95407 1.00668 0.98799 1.21992 0.94466 0.95876 1.04922 1.21815 0.75064 0.97617 1.02060 0.86798 1.47206 1.09325 1.47014 1.05295 1.23318 0.92521 1.10094 0.93700 1.22462 0.96136 1.03844 0.91527 1.18958 0.89751 0.88170 0.92846 1.42293 1.35279 0.99337 1.60109 1.19198 1.05061 0.90695 1.22084 0.90921 1.24752 0.99254 0.95902 1.01033 1.69671 1.38779 1.01737 1.47952 0.86229 0.82027 0.77641 0.80043 1.21258 1.21764 1.21182 1.75108 1.10221 1.15289 1.11359 1.78289 0.96239 1.19233 1.13415 1.21838 0.80682 1.01655 0.97592 0.87595 0.90396 0.90387 0.86922 0.86934 0.90026 0.89143 0.90655 0.89071 0.89688 0.90000 0.79623 0.94277 0.94433 0.78129 0.93512 0.87378 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.52 10.76 101.05 1.09 0.57 16 2 S -0.18 -1.44 21.52 -107.50 -2.31 -3.75 16 3 C -0.13 -0.68 4.77 36.01 0.17 -0.51 16 4 C 0.53 4.66 7.72 -10.99 -0.08 4.58 16 5 O -0.51 -6.79 15.28 5.56 0.08 -6.70 16 6 N -0.61 -4.16 2.97 -172.53 -0.51 -4.67 16 7 C 0.10 0.36 6.37 -3.49 -0.02 0.33 16 8 C -0.13 -0.54 6.10 -26.39 -0.16 -0.70 16 9 C -0.13 -1.02 5.49 -26.69 -0.15 -1.17 16 10 C 0.14 1.33 3.27 -67.83 -0.22 1.10 16 11 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 12 N -0.29 -4.17 3.26 -54.67 -0.18 -4.35 16 13 C -0.05 -0.70 10.60 -17.05 -0.18 -0.88 16 14 C 0.00 -0.04 6.61 -82.78 -0.55 -0.58 16 15 C 0.23 4.95 6.82 -5.19 -0.04 4.92 16 16 N -0.73 -19.10 5.59 -61.09 -0.34 -19.45 16 17 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 21 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 N -0.25 -5.25 12.41 33.29 0.41 -4.84 16 26 N -0.09 -1.69 13.17 60.35 0.79 -0.89 16 27 C 0.11 0.92 5.46 -3.74 -0.02 0.90 16 28 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 31 H 0.11 0.34 7.93 -51.92 -0.41 -0.07 16 32 H 0.11 0.34 7.70 -51.92 -0.40 -0.06 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.11 5.93 -51.93 -0.31 -0.20 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.19 2.19 7.17 -52.48 -0.38 1.82 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.39 10.90 7.66 -40.82 -0.31 10.59 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.11 1.16 7.01 -51.93 -0.36 0.80 16 45 H 0.09 0.67 6.91 -51.93 -0.36 0.32 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -37.45 383.60 -7.71 -45.16 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.73 Total: 3.03 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.41 Total: 1.12 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.90 Total: -62.20 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.08 Total: -6.70 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.31 Total: -3.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.45 -7.71 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185856847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.151 kcal (2) G-P(sol) polarization free energy of solvation -37.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds