Wall clock time and date at job start Tue Mar 31 2020 22:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 C 1.50699 * 109.47054 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00041 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.62856 * 359.71632 * 6 4 3 8 8 C 1.53620 * 108.53888 * 126.37107 * 7 6 4 9 9 C 1.53039 * 109.24437 * 54.85908 * 8 7 6 10 10 C 1.53041 * 109.53623 * 298.50850 * 9 8 7 11 11 H 1.09001 * 109.49530 * 301.41126 * 10 9 8 12 12 N 1.46501 * 109.49921 * 181.31362 * 10 9 8 13 13 C 1.35307 * 125.87262 * 274.87699 * 12 10 9 14 14 C 1.35346 * 106.18019 * 179.90169 * 13 12 10 15 15 C 1.50694 * 126.75486 * 180.12572 * 14 13 12 16 16 N 1.46505 * 109.47217 * 95.24771 * 15 14 13 17 17 C 1.36938 * 120.00067 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99542 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99783 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00405 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99552 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47140 * 60.00601 * 21 19 17 23 23 H 1.48501 * 109.46846 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47473 * 299.99865 * 21 19 17 25 25 N 1.33778 * 106.49567 * 0.35283 * 14 13 12 26 26 N 1.28640 * 108.88263 * 359.77179 * 25 14 13 27 27 C 1.46924 * 120.63200 * 179.97438 * 6 4 3 28 28 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 30 30 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 31 31 H 1.09000 * 109.47070 * 300.00061 * 3 2 1 32 32 H 1.09001 * 109.46593 * 60.00058 * 3 2 1 33 33 H 1.09001 * 109.58220 * 246.20541 * 7 6 4 34 34 H 1.08996 * 109.58731 * 6.62764 * 7 6 4 35 35 H 1.08997 * 109.63627 * 294.86360 * 8 7 6 36 36 H 1.08999 * 109.45494 * 174.73827 * 8 7 6 37 37 H 1.09002 * 109.46507 * 178.48695 * 9 8 7 38 38 H 1.09004 * 109.46249 * 58.52580 * 9 8 7 39 39 H 1.08005 * 126.90800 * 0.02562 * 13 12 10 40 40 H 1.09006 * 109.47347 * 215.24425 * 15 14 13 41 41 H 1.08994 * 109.47267 * 335.24788 * 15 14 13 42 42 H 0.96998 * 119.99899 * 0.02562 * 16 15 14 43 43 H 0.96993 * 119.99743 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.58588 * 353.37383 * 27 6 4 45 45 H 1.08999 * 109.58627 * 113.79225 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 8 4.4404 0.9620 0.0015 6 7 4.2575 3.1730 0.0013 7 6 3.3972 4.3641 -0.0049 8 6 3.8056 5.2677 1.1684 9 6 5.3022 5.5732 1.0726 10 6 6.0979 4.2696 1.1695 11 1 5.8681 3.7723 2.1118 12 7 7.5314 4.5660 1.1092 13 6 8.2622 4.7208 -0.0189 14 6 9.5273 4.9832 0.3843 15 6 10.7213 5.2364 -0.4995 16 7 10.8997 6.6796 -0.6777 17 6 11.9289 7.1525 -1.4473 18 1 12.6088 6.4615 -1.9232 19 6 12.0975 8.5199 -1.6164 20 7 11.2685 9.3620 -1.0368 21 14 13.5011 9.1649 -2.6669 22 1 13.3618 8.6466 -4.0516 23 1 13.4625 10.6492 -2.6872 24 1 14.7951 8.7117 -2.0965 25 7 9.5104 4.9685 1.7219 26 7 8.3131 4.7186 2.1204 27 6 5.7155 3.3546 0.0025 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8031 2.2371 -0.8900 32 1 1.8031 2.2370 0.8900 33 1 3.5238 4.9013 -0.9448 34 1 2.3558 4.0632 0.1090 35 1 3.5974 4.7610 2.1107 36 1 3.2407 6.1987 1.1233 37 1 5.5905 6.2362 1.8884 38 1 5.5136 6.0577 0.1193 39 1 7.9071 4.6511 -1.0365 40 1 11.6129 4.8147 -0.0355 41 1 10.5606 4.7677 -1.4703 42 1 10.2892 7.3002 -0.2499 43 1 11.3867 10.3174 -1.1547 44 1 6.2041 2.3875 0.1212 45 1 6.0276 3.8111 -0.9369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185856847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:01 Heat of formation + Delta-G solvation = 61.794500 kcal Electronic energy + Delta-G solvation = -26688.845484 eV Core-core repulsion = 22869.660931 eV Total energy + Delta-G solvation = -3819.184553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.35096 -41.38935 -38.88099 -36.86351 -35.72210 -33.81482 -33.42361 -32.10448 -31.62225 -30.42369 -29.51540 -27.71914 -26.48354 -25.34989 -24.74702 -23.12574 -22.38485 -21.77720 -20.19065 -19.37863 -18.71578 -18.04528 -17.68685 -17.35229 -16.80844 -16.59956 -16.40522 -16.07573 -15.76555 -15.51939 -15.32612 -15.03335 -14.83217 -14.61117 -14.46203 -14.38325 -14.15597 -13.94898 -13.72977 -13.43251 -13.15946 -13.08100 -12.74297 -12.71706 -12.57252 -12.36373 -12.23373 -12.12894 -12.03400 -11.88716 -11.82598 -11.18180 -11.02954 -10.94333 -10.87128 -10.25797 -9.93494 -9.01791 -8.71301 -7.92639 -5.23144 0.45844 0.56484 1.13253 1.40293 1.43278 1.51188 1.54483 1.60422 1.63847 1.91619 2.60077 3.05807 3.23810 3.37672 3.46571 3.49962 3.65324 3.84463 3.86378 3.98782 4.03481 4.13776 4.19752 4.22437 4.28897 4.37397 4.40035 4.40700 4.45148 4.53880 4.58587 4.71001 4.84489 4.89995 4.94934 4.95524 5.10681 5.15155 5.18905 5.25405 5.51355 5.62866 6.10776 6.26782 6.90921 7.33804 7.46990 8.04345 8.31172 9.30976 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.001984 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.078091 B =14111.132144 C =14158.380797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.280 6.280 3 C -0.105 4.105 4 C 0.528 3.472 5 O -0.566 6.566 6 N -0.600 5.600 7 C 0.096 3.904 8 C -0.121 4.121 9 C -0.131 4.131 10 C 0.134 3.866 11 H 0.112 0.888 12 N -0.278 5.278 13 C -0.021 4.021 14 C -0.034 4.034 15 C 0.235 3.765 16 N -0.738 5.738 17 C -0.246 4.246 18 H 0.084 0.916 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 0.980 3.020 22 H -0.272 1.272 23 H -0.297 1.297 24 H -0.280 1.280 25 N -0.297 5.297 26 N -0.112 5.112 27 C 0.112 3.888 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.224 0.776 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.082 0.918 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.838 -13.732 0.363 34.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.056 6.056 3 C -0.256 4.256 4 C 0.316 3.684 5 O -0.444 6.444 6 N -0.334 5.334 7 C -0.025 4.025 8 C -0.160 4.160 9 C -0.169 4.169 10 C 0.032 3.968 11 H 0.130 0.870 12 N -0.072 5.072 13 C -0.172 4.172 14 C -0.172 4.172 15 C 0.107 3.893 16 N -0.380 5.380 17 C -0.377 4.377 18 H 0.101 0.899 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.808 3.192 22 H -0.198 1.198 23 H -0.223 1.223 24 H -0.206 1.206 25 N -0.164 5.164 26 N -0.090 5.090 27 C -0.013 4.013 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.241 0.759 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -30.575 -15.156 1.822 34.173 hybrid contribution 0.147 1.734 -1.049 2.032 sum -30.427 -13.422 0.773 33.265 Atomic orbital electron populations 1.23540 0.91066 1.07615 1.06479 1.88055 1.09894 1.09366 1.98297 1.23522 0.94432 0.97538 1.10070 1.20350 0.90512 0.82331 0.75198 1.90781 1.63387 1.39782 1.50475 1.47965 1.05559 1.06598 1.73243 1.22398 0.95477 0.84451 1.00191 1.21987 0.92548 1.02041 0.99380 1.22019 0.96725 0.93989 1.04197 1.22225 0.72604 0.99291 1.02669 0.86989 1.47573 1.10679 1.44623 1.04314 1.23710 0.91119 1.07180 0.95233 1.22300 0.97149 1.06584 0.91212 1.18970 0.90482 0.85528 0.94291 1.42477 1.34621 1.01210 1.59729 1.19664 1.05341 0.91192 1.21540 0.89860 1.25635 1.02061 0.96254 1.02893 1.69845 1.40833 1.01627 1.49903 0.85125 0.78833 0.76426 0.78820 1.19752 1.22291 1.20629 1.75033 1.11842 1.16997 1.12481 1.78179 0.96039 1.20232 1.14567 1.21661 0.82237 0.99984 0.97441 0.87464 0.88809 0.88772 0.83789 0.83856 0.88557 0.85682 0.90303 0.86693 0.91493 0.89939 0.75937 0.95398 0.91918 0.79762 0.94050 0.89944 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.76 113.37 1.22 0.65 16 2 S -0.28 -4.14 21.52 -56.49 -1.22 -5.35 16 3 C -0.11 -0.79 4.77 71.24 0.34 -0.45 16 4 C 0.53 8.32 7.72 87.66 0.68 8.99 16 5 O -0.57 -15.32 15.28 -3.04 -0.05 -15.37 16 6 N -0.60 -6.66 2.97 -818.17 -2.43 -9.08 16 7 C 0.10 0.25 6.37 86.51 0.55 0.80 16 8 C -0.12 -0.55 6.10 30.82 0.19 -0.36 16 9 C -0.13 -1.73 5.49 30.62 0.17 -1.56 16 10 C 0.13 2.43 3.27 45.05 0.15 2.58 16 11 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 12 N -0.28 -7.80 3.26 -326.87 -1.06 -8.86 16 13 C -0.02 -0.61 10.60 83.49 0.89 0.27 16 14 C -0.03 -1.32 6.61 41.59 0.28 -1.05 16 15 C 0.24 10.11 6.82 85.63 0.58 10.70 16 16 N -0.74 -39.32 5.59 -347.18 -1.94 -41.27 16 17 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 19 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 20 N -0.97 -60.74 13.06 21.65 0.28 -60.45 16 21 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 N -0.30 -12.76 12.41 -48.60 -0.60 -13.36 16 26 N -0.11 -4.13 13.17 37.02 0.49 -3.64 16 27 C 0.11 1.77 5.46 86.35 0.47 2.24 16 28 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.14 0.19 7.93 -2.39 -0.02 0.17 16 32 H 0.14 0.20 7.70 -2.39 -0.02 0.18 16 33 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.13 -0.47 5.93 -2.39 -0.01 -0.48 16 35 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.11 0.10 8.14 -2.39 -0.02 0.09 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.22 4.68 7.17 -2.91 -0.02 4.66 16 40 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.37 21.54 7.66 -92.71 -0.71 20.83 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.08 1.79 7.01 -2.39 -0.02 1.77 16 45 H 0.10 1.31 6.91 -2.39 -0.02 1.30 16 Total: -1.00 -86.56 383.60 2.61 -83.96 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.30 Total: 19.22 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.81 Total: 5.68 kcal Atomic # 7 Polarization: -131.41 SS G_CDS: -5.27 Total: -136.67 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.05 Total: -15.37 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -1.22 Total: -5.35 kcal Total: -86.56 2.61 -83.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185856847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.750 kcal (2) G-P(sol) polarization free energy of solvation -86.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds