Wall clock time and date at job start Tue Mar 31 2020 22:24:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.45204 * 109.46826 * 2 1
4 4 C 1.34225 * 116.99563 * 180.02562 * 3 2 1
5 5 O 1.20823 * 120.00383 * 359.97438 * 4 3 2
6 6 C 1.50706 * 119.99537 * 180.02562 * 4 3 2
7 7 C 1.50698 * 109.41177 * 300.14008 * 6 4 3
8 8 C 1.50694 * 120.00037 * 59.86156 * 7 6 4
9 9 O 1.20761 * 119.99708 * 239.85789 * 7 6 4
10 10 C 1.52957 * 109.41508 * 60.00146 * 6 4 3
11 11 C 1.53228 * 109.40649 * 183.70294 * 10 6 4
12 12 C 1.51272 * 108.53429 * 305.37302 * 11 10 6
13 13 O 1.20759 * 120.84890 * 231.36520 * 12 11 10
14 14 C 1.51269 * 118.30211 * 51.34885 * 12 11 10
15 15 H 1.08997 * 109.62714 * 68.55719 * 14 12 11
16 16 C 1.50704 * 109.62438 * 188.93731 * 14 12 11
17 17 O 1.21290 * 119.99968 * 108.79442 * 16 14 12
18 18 N 1.34776 * 119.99699 * 288.79417 * 16 14 12
19 19 C 1.46494 * 120.00303 * 4.72418 * 18 16 14
20 20 C 1.37102 * 119.99771 * 184.72614 * 18 16 14
21 21 H 1.08008 * 119.99843 * 22.16666 * 20 18 16
22 22 C 1.38941 * 120.00070 * 202.17085 * 20 18 16
23 23 N 1.31409 * 120.00219 * 31.30696 * 22 20 18
24 24 Si 1.86808 * 120.00143 * 211.31000 * 22 20 18
25 25 H 1.48497 * 109.47242 * 179.97438 * 24 22 20
26 26 H 1.48496 * 109.47078 * 299.99963 * 24 22 20
27 27 H 1.48506 * 109.46950 * 59.99478 * 24 22 20
28 28 C 1.52963 * 109.41025 * 180.35457 * 6 4 3
29 29 H 1.09002 * 109.47071 * 299.99027 * 1 2 3
30 30 H 1.08997 * 109.47390 * 59.99816 * 1 2 3
31 31 H 1.09002 * 109.46897 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46515 * 240.00450 * 2 1 3
33 33 H 1.08997 * 109.47390 * 120.00184 * 2 1 3
34 34 H 1.09003 * 109.47264 * 89.99805 * 8 7 6
35 35 H 1.09002 * 109.47424 * 209.99878 * 8 7 6
36 36 H 1.08998 * 109.47160 * 329.99763 * 8 7 6
37 37 H 1.09005 * 109.48484 * 63.71974 * 10 6 4
38 38 H 1.09000 * 109.47955 * 303.68003 * 10 6 4
39 39 H 1.08994 * 109.62694 * 185.65376 * 11 10 6
40 40 H 1.09004 * 109.62368 * 65.08468 * 11 10 6
41 41 H 1.09002 * 109.47425 * 204.67367 * 19 18 16
42 42 H 1.09006 * 109.47483 * 324.67810 * 19 18 16
43 43 H 1.08999 * 109.46909 * 84.67552 * 19 18 16
44 44 H 0.97002 * 120.00266 * 6.20330 * 23 22 20
45 45 H 1.08995 * 109.48382 * 56.31210 * 28 6 4
46 46 H 1.09004 * 109.47949 * 296.27326 * 28 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5449 -0.0005
5 8 4.0807 0.5867 -0.0005
6 6 3.9206 2.9375 0.0000
7 6 3.4519 3.6738 -1.2285
8 6 1.9786 3.8854 -1.4638
9 8 4.2571 4.0943 -2.0242
10 6 3.4490 3.6823 1.2500
11 6 3.9584 5.1267 1.2046
12 6 5.4601 5.1015 1.0234
13 8 6.1832 5.7294 1.7590
14 6 6.0327 4.2693 -0.1025
15 1 5.7666 4.7165 -1.0603
16 6 7.5328 4.2060 0.0272
17 8 8.0694 3.1714 0.3629
18 7 8.2781 5.2992 -0.2299
19 6 7.6261 6.5752 -0.5343
20 6 9.6464 5.2169 -0.2065
21 1 10.1324 4.2618 -0.3414
22 6 10.4080 6.3622 -0.0093
23 7 9.9399 7.3435 0.7288
24 14 12.0974 6.5070 -0.7933
25 1 12.6999 7.8155 -0.4328
26 1 12.9672 5.4087 -0.3014
27 1 11.9677 6.4122 -2.2697
28 6 5.4480 2.8559 -0.0097
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8901
33 1 1.8934 -0.5138 0.8899
34 1 1.6686 4.8246 -1.0055
35 1 1.7835 3.9224 -2.5356
36 1 1.4180 3.0624 -1.0207
37 1 3.8407 3.1863 2.1382
38 1 2.3595 3.6820 1.2839
39 1 3.7107 5.6318 2.1382
40 1 3.4974 5.6513 0.3677
41 1 8.3018 7.1977 -1.1209
42 1 6.7151 6.3911 -1.1039
43 1 7.3762 7.0864 0.3954
44 1 9.1042 7.2333 1.2088
45 1 5.7754 2.2700 -0.8685
46 1 5.7925 2.3796 0.9083
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001186789250.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:24:20
Heat of formation + Delta-G solvation = -180.628480 kcal
Electronic energy + Delta-G solvation = -31839.756414 eV
Core-core repulsion = 27502.721239 eV
Total energy + Delta-G solvation = -4337.035175 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.161 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.86673 -40.23539 -39.22301 -37.79519 -37.13318 -35.99983 -34.82371 -32.36589
-31.81366 -31.16964 -30.74998 -29.16133 -26.37558 -24.85097 -24.29751 -23.41707
-22.90403 -22.01585 -20.56393 -19.51578 -18.59365 -17.79683 -17.38940 -17.07329
-16.85254 -16.14077 -15.95853 -15.67417 -15.50280 -15.08413 -14.73205 -14.43352
-14.21053 -14.09727 -13.79775 -13.72132 -13.53802 -13.25007 -13.09507 -12.95710
-12.56623 -12.52217 -12.31889 -12.25791 -11.89692 -11.84444 -11.76471 -11.72154
-11.58768 -11.36167 -11.22987 -10.88920 -10.83329 -10.74422 -10.64687 -10.13441
-9.94547 -9.72398 -9.22028 -8.82535 -8.25689 -7.73914 -6.55689 -3.73281
1.35074 1.85028 2.15479 2.31723 3.35271 3.41967 3.56759 3.62536
3.70252 3.97433 4.18754 4.25921 4.34868 4.41676 4.53309 4.56018
4.66899 4.79204 4.87517 4.89813 4.99623 5.07178 5.10137 5.15753
5.22214 5.30677 5.34113 5.35904 5.46910 5.53856 5.56128 5.58927
5.70143 5.73603 5.90625 6.03464 6.11527 6.25073 6.38255 6.51765
6.73707 7.12074 7.39021 7.69963 7.98103 8.20153 8.73340 9.03530
9.52710 9.98112 10.71176
Molecular weight = 339.16amu
Principal moments of inertia in cm(-1)
A = 0.022937 B = 0.003242 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.457922 B = 8633.430458 C = 8962.867497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.058 3.942
3 O -0.354 6.354
4 C 0.479 3.521
5 O -0.479 6.479
6 C -0.105 4.105
7 C 0.364 3.636
8 C -0.210 4.210
9 O -0.422 6.422
10 C -0.096 4.096
11 C -0.170 4.170
12 C 0.356 3.644
13 O -0.420 6.420
14 C -0.162 4.162
15 H 0.137 0.863
16 C 0.456 3.544
17 O -0.581 6.581
18 N -0.435 5.435
19 C 0.081 3.919
20 C -0.406 4.406
21 H 0.092 0.908
22 C 0.009 3.991
23 N -0.869 5.869
24 Si 1.071 2.929
25 H -0.281 1.281
26 H -0.283 1.283
27 H -0.284 1.284
28 C -0.061 4.061
29 H 0.068 0.932
30 H 0.067 0.933
31 H 0.080 0.920
32 H 0.072 0.928
33 H 0.073 0.927
34 H 0.101 0.899
35 H 0.090 0.910
36 H 0.103 0.897
37 H 0.090 0.910
38 H 0.098 0.902
39 H 0.104 0.896
40 H 0.097 0.903
41 H 0.072 0.928
42 H 0.037 0.963
43 H 0.054 0.946
44 H 0.280 0.720
45 H 0.090 0.910
46 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.334 -7.041 -2.397 26.403
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.016 4.016
3 O -0.272 6.272
4 C 0.320 3.680
5 O -0.364 6.364
6 C -0.108 4.108
7 C 0.237 3.763
8 C -0.266 4.266
9 O -0.293 6.293
10 C -0.133 4.133
11 C -0.208 4.208
12 C 0.228 3.772
13 O -0.290 6.290
14 C -0.184 4.184
15 H 0.154 0.846
16 C 0.243 3.757
17 O -0.466 6.466
18 N -0.153 5.153
19 C -0.064 4.064
20 C -0.533 4.533
21 H 0.110 0.890
22 C -0.199 4.199
23 N -0.503 5.503
24 Si 0.897 3.103
25 H -0.206 1.206
26 H -0.209 1.209
27 H -0.211 1.211
28 C -0.099 4.099
29 H 0.087 0.913
30 H 0.086 0.914
31 H 0.098 0.902
32 H 0.090 0.910
33 H 0.091 0.909
34 H 0.120 0.880
35 H 0.108 0.892
36 H 0.122 0.878
37 H 0.108 0.892
38 H 0.116 0.884
39 H 0.123 0.877
40 H 0.115 0.885
41 H 0.091 0.909
42 H 0.056 0.944
43 H 0.072 0.928
44 H 0.092 0.908
45 H 0.109 0.891
46 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -22.724 -6.237 -2.475 23.694
hybrid contribution -1.485 -1.213 0.266 1.936
sum -24.209 -7.450 -2.210 25.425
Atomic orbital electron populations
1.21819 0.92343 1.03165 1.03598 1.23121 0.95453 0.79933 1.03047
1.86457 1.23932 1.32678 1.84130 1.22820 0.80831 0.91141 0.73231
1.90742 1.60264 1.42118 1.43249 1.21491 0.99460 0.90780 0.99026
1.24309 0.92195 0.75850 0.83903 1.22453 0.93588 1.05528 1.05071
1.90398 1.57141 1.39189 1.42613 1.21536 1.02525 0.94114 0.95176
1.22392 0.95467 0.97473 1.05432 1.24650 0.90639 0.78498 0.83440
1.90493 1.62969 1.34823 1.40724 1.22316 0.97485 0.97039 1.01561
0.84554 1.19214 0.86222 0.85916 0.84304 1.90514 1.72876 1.30970
1.52232 1.43465 1.06255 1.06996 1.58538 1.21764 0.96508 0.88026
1.00077 1.20378 0.80020 0.98798 1.54056 0.89027 1.26339 1.05146
0.92640 0.95778 1.70710 1.21972 1.36015 1.21608 0.83498 0.74146
0.76364 0.76302 1.20575 1.20930 1.21083 1.21090 0.86780 0.95789
1.06279 0.91303 0.91369 0.90160 0.90992 0.90883 0.88033 0.89169
0.87822 0.89177 0.88367 0.87721 0.88470 0.90889 0.94398 0.92769
0.90836 0.89148 0.88919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.61 10.29 37.16 0.38 -0.23 16
2 C 0.06 0.40 6.19 37.16 0.23 0.63 16
3 O -0.35 -3.02 7.55 -39.24 -0.30 -3.32 16
4 C 0.48 5.73 6.52 36.01 0.23 5.97 16
5 O -0.48 -7.42 15.69 -18.75 -0.29 -7.72 16
6 C -0.11 -1.29 0.58 -156.85 -0.09 -1.38 16
7 C 0.36 4.08 4.48 -29.04 -0.13 3.95 16
8 C -0.21 -1.39 9.67 36.00 0.35 -1.04 16
9 O -0.42 -6.22 14.16 6.00 0.08 -6.13 16
10 C -0.10 -0.91 4.54 -26.64 -0.12 -1.03 16
11 C -0.17 -1.87 5.79 -27.48 -0.16 -2.02 16
12 C 0.36 6.30 5.93 -28.48 -0.17 6.13 16
13 O -0.42 -9.26 14.79 6.00 0.09 -9.17 16
14 C -0.16 -3.21 1.55 -92.52 -0.14 -3.35 16
15 H 0.14 2.59 4.23 -51.93 -0.22 2.37 16
16 C 0.46 12.10 6.37 -10.98 -0.07 12.03 16
17 O -0.58 -17.46 15.60 5.55 0.09 -17.37 16
18 N -0.43 -12.07 2.84 -122.19 -0.35 -12.42 16
19 C 0.08 1.93 7.41 59.84 0.44 2.38 16
20 C -0.41 -12.25 9.06 -14.93 -0.14 -12.38 16
21 H 0.09 2.92 7.59 -52.48 -0.40 2.53 16
22 C 0.01 0.26 4.54 -17.47 -0.08 0.19 16
23 N -0.87 -25.70 12.64 55.49 0.70 -25.00 16
24 Si 1.07 25.03 30.02 -169.99 -5.10 19.92 16
25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
28 C -0.06 -1.08 2.53 -26.63 -0.07 -1.14 16
29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16
30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16
32 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16
33 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16
34 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16
35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
36 H 0.10 0.57 5.49 -51.93 -0.29 0.29 16
37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
38 H 0.10 0.57 7.76 -51.93 -0.40 0.16 16
39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16
40 H 0.10 0.85 7.32 -51.93 -0.38 0.47 16
41 H 0.07 1.80 7.08 -51.93 -0.37 1.43 16
42 H 0.04 0.77 6.30 -51.93 -0.33 0.44 16
43 H 0.05 1.33 5.65 -51.93 -0.29 1.03 16
44 H 0.28 8.50 6.58 -40.82 -0.27 8.23 16
45 H 0.09 1.73 8.00 -51.93 -0.42 1.31 16
46 H 0.09 1.78 7.80 -51.93 -0.40 1.37 16
LS Contribution 367.11 15.07 5.53 5.53
Total: -1.00 -39.10 367.11 -5.43 -44.53
By element:
Atomic # 1 Polarization: 8.81 SS G_CDS: -6.36 Total: 2.45 kcal
Atomic # 6 Polarization: 8.22 SS G_CDS: 0.47 Total: 8.69 kcal
Atomic # 7 Polarization: -37.77 SS G_CDS: 0.35 Total: -37.41 kcal
Atomic # 8 Polarization: -43.39 SS G_CDS: -0.33 Total: -43.72 kcal
Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.92 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -39.10 -5.43 -44.53 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001186789250.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -136.097 kcal
(2) G-P(sol) polarization free energy of solvation -39.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.435 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal
(6) G-S(sol) free energy of system = (1) + (5) -180.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds