Wall clock time and date at job start Tue Mar 31 2020 22:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.46826 * 2 1 4 4 C 1.34225 * 116.99563 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00383 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99537 * 180.02562 * 4 3 2 7 7 C 1.50698 * 109.41177 * 300.14008 * 6 4 3 8 8 C 1.50694 * 120.00037 * 59.86156 * 7 6 4 9 9 O 1.20761 * 119.99708 * 239.85789 * 7 6 4 10 10 C 1.52957 * 109.41508 * 60.00146 * 6 4 3 11 11 C 1.53228 * 109.40649 * 183.70294 * 10 6 4 12 12 C 1.51272 * 108.53429 * 305.37302 * 11 10 6 13 13 O 1.20759 * 120.84890 * 231.36520 * 12 11 10 14 14 C 1.51269 * 118.30211 * 51.34885 * 12 11 10 15 15 H 1.08997 * 109.62714 * 68.55719 * 14 12 11 16 16 C 1.50704 * 109.62438 * 188.93731 * 14 12 11 17 17 O 1.21290 * 119.99968 * 108.79442 * 16 14 12 18 18 N 1.34776 * 119.99699 * 288.79417 * 16 14 12 19 19 C 1.46494 * 120.00303 * 4.72418 * 18 16 14 20 20 C 1.37102 * 119.99771 * 184.72614 * 18 16 14 21 21 H 1.08008 * 119.99843 * 22.16666 * 20 18 16 22 22 C 1.38941 * 120.00070 * 202.17085 * 20 18 16 23 23 N 1.31409 * 120.00219 * 31.30696 * 22 20 18 24 24 Si 1.86808 * 120.00143 * 211.31000 * 22 20 18 25 25 H 1.48497 * 109.47242 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47078 * 299.99963 * 24 22 20 27 27 H 1.48506 * 109.46950 * 59.99478 * 24 22 20 28 28 C 1.52963 * 109.41025 * 180.35457 * 6 4 3 29 29 H 1.09002 * 109.47071 * 299.99027 * 1 2 3 30 30 H 1.08997 * 109.47390 * 59.99816 * 1 2 3 31 31 H 1.09002 * 109.46897 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46515 * 240.00450 * 2 1 3 33 33 H 1.08997 * 109.47390 * 120.00184 * 2 1 3 34 34 H 1.09003 * 109.47264 * 89.99805 * 8 7 6 35 35 H 1.09002 * 109.47424 * 209.99878 * 8 7 6 36 36 H 1.08998 * 109.47160 * 329.99763 * 8 7 6 37 37 H 1.09005 * 109.48484 * 63.71974 * 10 6 4 38 38 H 1.09000 * 109.47955 * 303.68003 * 10 6 4 39 39 H 1.08994 * 109.62694 * 185.65376 * 11 10 6 40 40 H 1.09004 * 109.62368 * 65.08468 * 11 10 6 41 41 H 1.09002 * 109.47425 * 204.67367 * 19 18 16 42 42 H 1.09006 * 109.47483 * 324.67810 * 19 18 16 43 43 H 1.08999 * 109.46909 * 84.67552 * 19 18 16 44 44 H 0.97002 * 120.00266 * 6.20330 * 23 22 20 45 45 H 1.08995 * 109.48382 * 56.31210 * 28 6 4 46 46 H 1.09004 * 109.47949 * 296.27326 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.4519 3.6738 -1.2285 8 6 1.9786 3.8854 -1.4638 9 8 4.2571 4.0943 -2.0242 10 6 3.4490 3.6823 1.2500 11 6 3.9584 5.1267 1.2046 12 6 5.4601 5.1015 1.0234 13 8 6.1832 5.7294 1.7590 14 6 6.0327 4.2693 -0.1025 15 1 5.7666 4.7165 -1.0603 16 6 7.5328 4.2060 0.0272 17 8 8.0694 3.1714 0.3629 18 7 8.2781 5.2992 -0.2299 19 6 7.6261 6.5752 -0.5343 20 6 9.6464 5.2169 -0.2065 21 1 10.1324 4.2618 -0.3414 22 6 10.4080 6.3622 -0.0093 23 7 9.9399 7.3435 0.7288 24 14 12.0974 6.5070 -0.7933 25 1 12.6999 7.8155 -0.4328 26 1 12.9672 5.4087 -0.3014 27 1 11.9677 6.4122 -2.2697 28 6 5.4480 2.8559 -0.0097 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6686 4.8246 -1.0055 35 1 1.7835 3.9224 -2.5356 36 1 1.4180 3.0624 -1.0207 37 1 3.8407 3.1863 2.1382 38 1 2.3595 3.6820 1.2839 39 1 3.7107 5.6318 2.1382 40 1 3.4974 5.6513 0.3677 41 1 8.3018 7.1977 -1.1209 42 1 6.7151 6.3911 -1.1039 43 1 7.3762 7.0864 0.3954 44 1 9.1042 7.2333 1.2088 45 1 5.7754 2.2700 -0.8685 46 1 5.7925 2.3796 0.9083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186789250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:20 Heat of formation + Delta-G solvation = -180.628480 kcal Electronic energy + Delta-G solvation = -31839.756414 eV Core-core repulsion = 27502.721239 eV Total energy + Delta-G solvation = -4337.035175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86673 -40.23539 -39.22301 -37.79519 -37.13318 -35.99983 -34.82371 -32.36589 -31.81366 -31.16964 -30.74998 -29.16133 -26.37558 -24.85097 -24.29751 -23.41707 -22.90403 -22.01585 -20.56393 -19.51578 -18.59365 -17.79683 -17.38940 -17.07329 -16.85254 -16.14077 -15.95853 -15.67417 -15.50280 -15.08413 -14.73205 -14.43352 -14.21053 -14.09727 -13.79775 -13.72132 -13.53802 -13.25007 -13.09507 -12.95710 -12.56623 -12.52217 -12.31889 -12.25791 -11.89692 -11.84444 -11.76471 -11.72154 -11.58768 -11.36167 -11.22987 -10.88920 -10.83329 -10.74422 -10.64687 -10.13441 -9.94547 -9.72398 -9.22028 -8.82535 -8.25689 -7.73914 -6.55689 -3.73281 1.35074 1.85028 2.15479 2.31723 3.35271 3.41967 3.56759 3.62536 3.70252 3.97433 4.18754 4.25921 4.34868 4.41676 4.53309 4.56018 4.66899 4.79204 4.87517 4.89813 4.99623 5.07178 5.10137 5.15753 5.22214 5.30677 5.34113 5.35904 5.46910 5.53856 5.56128 5.58927 5.70143 5.73603 5.90625 6.03464 6.11527 6.25073 6.38255 6.51765 6.73707 7.12074 7.39021 7.69963 7.98103 8.20153 8.73340 9.03530 9.52710 9.98112 10.71176 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.003242 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.457922 B = 8633.430458 C = 8962.867497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.354 6.354 4 C 0.479 3.521 5 O -0.479 6.479 6 C -0.105 4.105 7 C 0.364 3.636 8 C -0.210 4.210 9 O -0.422 6.422 10 C -0.096 4.096 11 C -0.170 4.170 12 C 0.356 3.644 13 O -0.420 6.420 14 C -0.162 4.162 15 H 0.137 0.863 16 C 0.456 3.544 17 O -0.581 6.581 18 N -0.435 5.435 19 C 0.081 3.919 20 C -0.406 4.406 21 H 0.092 0.908 22 C 0.009 3.991 23 N -0.869 5.869 24 Si 1.071 2.929 25 H -0.281 1.281 26 H -0.283 1.283 27 H -0.284 1.284 28 C -0.061 4.061 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.280 0.720 45 H 0.090 0.910 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.334 -7.041 -2.397 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 O -0.272 6.272 4 C 0.320 3.680 5 O -0.364 6.364 6 C -0.108 4.108 7 C 0.237 3.763 8 C -0.266 4.266 9 O -0.293 6.293 10 C -0.133 4.133 11 C -0.208 4.208 12 C 0.228 3.772 13 O -0.290 6.290 14 C -0.184 4.184 15 H 0.154 0.846 16 C 0.243 3.757 17 O -0.466 6.466 18 N -0.153 5.153 19 C -0.064 4.064 20 C -0.533 4.533 21 H 0.110 0.890 22 C -0.199 4.199 23 N -0.503 5.503 24 Si 0.897 3.103 25 H -0.206 1.206 26 H -0.209 1.209 27 H -0.211 1.211 28 C -0.099 4.099 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.724 -6.237 -2.475 23.694 hybrid contribution -1.485 -1.213 0.266 1.936 sum -24.209 -7.450 -2.210 25.425 Atomic orbital electron populations 1.21819 0.92343 1.03165 1.03598 1.23121 0.95453 0.79933 1.03047 1.86457 1.23932 1.32678 1.84130 1.22820 0.80831 0.91141 0.73231 1.90742 1.60264 1.42118 1.43249 1.21491 0.99460 0.90780 0.99026 1.24309 0.92195 0.75850 0.83903 1.22453 0.93588 1.05528 1.05071 1.90398 1.57141 1.39189 1.42613 1.21536 1.02525 0.94114 0.95176 1.22392 0.95467 0.97473 1.05432 1.24650 0.90639 0.78498 0.83440 1.90493 1.62969 1.34823 1.40724 1.22316 0.97485 0.97039 1.01561 0.84554 1.19214 0.86222 0.85916 0.84304 1.90514 1.72876 1.30970 1.52232 1.43465 1.06255 1.06996 1.58538 1.21764 0.96508 0.88026 1.00077 1.20378 0.80020 0.98798 1.54056 0.89027 1.26339 1.05146 0.92640 0.95778 1.70710 1.21972 1.36015 1.21608 0.83498 0.74146 0.76364 0.76302 1.20575 1.20930 1.21083 1.21090 0.86780 0.95789 1.06279 0.91303 0.91369 0.90160 0.90992 0.90883 0.88033 0.89169 0.87822 0.89177 0.88367 0.87721 0.88470 0.90889 0.94398 0.92769 0.90836 0.89148 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.29 37.16 0.38 -0.23 16 2 C 0.06 0.40 6.19 37.16 0.23 0.63 16 3 O -0.35 -3.02 7.55 -39.24 -0.30 -3.32 16 4 C 0.48 5.73 6.52 36.01 0.23 5.97 16 5 O -0.48 -7.42 15.69 -18.75 -0.29 -7.72 16 6 C -0.11 -1.29 0.58 -156.85 -0.09 -1.38 16 7 C 0.36 4.08 4.48 -29.04 -0.13 3.95 16 8 C -0.21 -1.39 9.67 36.00 0.35 -1.04 16 9 O -0.42 -6.22 14.16 6.00 0.08 -6.13 16 10 C -0.10 -0.91 4.54 -26.64 -0.12 -1.03 16 11 C -0.17 -1.87 5.79 -27.48 -0.16 -2.02 16 12 C 0.36 6.30 5.93 -28.48 -0.17 6.13 16 13 O -0.42 -9.26 14.79 6.00 0.09 -9.17 16 14 C -0.16 -3.21 1.55 -92.52 -0.14 -3.35 16 15 H 0.14 2.59 4.23 -51.93 -0.22 2.37 16 16 C 0.46 12.10 6.37 -10.98 -0.07 12.03 16 17 O -0.58 -17.46 15.60 5.55 0.09 -17.37 16 18 N -0.43 -12.07 2.84 -122.19 -0.35 -12.42 16 19 C 0.08 1.93 7.41 59.84 0.44 2.38 16 20 C -0.41 -12.25 9.06 -14.93 -0.14 -12.38 16 21 H 0.09 2.92 7.59 -52.48 -0.40 2.53 16 22 C 0.01 0.26 4.54 -17.47 -0.08 0.19 16 23 N -0.87 -25.70 12.64 55.49 0.70 -25.00 16 24 Si 1.07 25.03 30.02 -169.99 -5.10 19.92 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C -0.06 -1.08 2.53 -26.63 -0.07 -1.14 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.57 5.49 -51.93 -0.29 0.29 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.57 7.76 -51.93 -0.40 0.16 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.85 7.32 -51.93 -0.38 0.47 16 41 H 0.07 1.80 7.08 -51.93 -0.37 1.43 16 42 H 0.04 0.77 6.30 -51.93 -0.33 0.44 16 43 H 0.05 1.33 5.65 -51.93 -0.29 1.03 16 44 H 0.28 8.50 6.58 -40.82 -0.27 8.23 16 45 H 0.09 1.73 8.00 -51.93 -0.42 1.31 16 46 H 0.09 1.78 7.80 -51.93 -0.40 1.37 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -39.10 367.11 -5.43 -44.53 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.36 Total: 2.45 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 0.47 Total: 8.69 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.35 Total: -37.41 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.33 Total: -43.72 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.10 -5.43 -44.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186789250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.097 kcal (2) G-P(sol) polarization free energy of solvation -39.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds