Wall clock time and date at job start Tue Mar 31 2020 22:24:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.45204 * 109.46826 * 2 1
4 4 C 1.34225 * 116.99563 * 180.02562 * 3 2 1
5 5 O 1.20823 * 120.00383 * 359.97438 * 4 3 2
6 6 C 1.50706 * 119.99537 * 180.02562 * 4 3 2
7 7 C 1.50698 * 109.41177 * 300.14008 * 6 4 3
8 8 C 1.50694 * 120.00037 * 59.86156 * 7 6 4
9 9 O 1.20761 * 119.99708 * 239.85789 * 7 6 4
10 10 C 1.52957 * 109.41508 * 60.00146 * 6 4 3
11 11 C 1.53228 * 109.40649 * 183.70294 * 10 6 4
12 12 C 1.51272 * 108.53429 * 305.37302 * 11 10 6
13 13 O 1.20759 * 120.84890 * 231.36520 * 12 11 10
14 14 C 1.51269 * 118.30211 * 51.34885 * 12 11 10
15 15 H 1.08997 * 109.62714 * 68.55719 * 14 12 11
16 16 C 1.50704 * 109.62438 * 188.93731 * 14 12 11
17 17 O 1.21290 * 119.99968 * 108.79442 * 16 14 12
18 18 N 1.34776 * 119.99699 * 288.79417 * 16 14 12
19 19 C 1.46494 * 120.00303 * 4.72418 * 18 16 14
20 20 C 1.37102 * 119.99771 * 184.72614 * 18 16 14
21 21 H 1.08008 * 119.99843 * 22.16666 * 20 18 16
22 22 C 1.38941 * 120.00070 * 202.17085 * 20 18 16
23 23 N 1.31409 * 120.00219 * 31.30696 * 22 20 18
24 24 Si 1.86808 * 120.00143 * 211.31000 * 22 20 18
25 25 H 1.48497 * 109.47242 * 179.97438 * 24 22 20
26 26 H 1.48496 * 109.47078 * 299.99963 * 24 22 20
27 27 H 1.48506 * 109.46950 * 59.99478 * 24 22 20
28 28 C 1.52963 * 109.41025 * 180.35457 * 6 4 3
29 29 H 1.09002 * 109.47071 * 299.99027 * 1 2 3
30 30 H 1.08997 * 109.47390 * 59.99816 * 1 2 3
31 31 H 1.09002 * 109.46897 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46515 * 240.00450 * 2 1 3
33 33 H 1.08997 * 109.47390 * 120.00184 * 2 1 3
34 34 H 1.09003 * 109.47264 * 89.99805 * 8 7 6
35 35 H 1.09002 * 109.47424 * 209.99878 * 8 7 6
36 36 H 1.08998 * 109.47160 * 329.99763 * 8 7 6
37 37 H 1.09005 * 109.48484 * 63.71974 * 10 6 4
38 38 H 1.09000 * 109.47955 * 303.68003 * 10 6 4
39 39 H 1.08994 * 109.62694 * 185.65376 * 11 10 6
40 40 H 1.09004 * 109.62368 * 65.08468 * 11 10 6
41 41 H 1.09002 * 109.47425 * 204.67367 * 19 18 16
42 42 H 1.09006 * 109.47483 * 324.67810 * 19 18 16
43 43 H 1.08999 * 109.46909 * 84.67552 * 19 18 16
44 44 H 0.97002 * 120.00266 * 6.20330 * 23 22 20
45 45 H 1.08995 * 109.48382 * 56.31210 * 28 6 4
46 46 H 1.09004 * 109.47949 * 296.27326 * 28 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5449 -0.0005
5 8 4.0807 0.5867 -0.0005
6 6 3.9206 2.9375 0.0000
7 6 3.4519 3.6738 -1.2285
8 6 1.9786 3.8854 -1.4638
9 8 4.2571 4.0943 -2.0242
10 6 3.4490 3.6823 1.2500
11 6 3.9584 5.1267 1.2046
12 6 5.4601 5.1015 1.0234
13 8 6.1832 5.7294 1.7590
14 6 6.0327 4.2693 -0.1025
15 1 5.7666 4.7165 -1.0603
16 6 7.5328 4.2060 0.0272
17 8 8.0694 3.1714 0.3629
18 7 8.2781 5.2992 -0.2299
19 6 7.6261 6.5752 -0.5343
20 6 9.6464 5.2169 -0.2065
21 1 10.1324 4.2618 -0.3414
22 6 10.4080 6.3622 -0.0093
23 7 9.9399 7.3435 0.7288
24 14 12.0974 6.5070 -0.7933
25 1 12.6999 7.8155 -0.4328
26 1 12.9672 5.4087 -0.3014
27 1 11.9677 6.4122 -2.2697
28 6 5.4480 2.8559 -0.0097
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8901
33 1 1.8934 -0.5138 0.8899
34 1 1.6686 4.8246 -1.0055
35 1 1.7835 3.9224 -2.5356
36 1 1.4180 3.0624 -1.0207
37 1 3.8407 3.1863 2.1382
38 1 2.3595 3.6820 1.2839
39 1 3.7107 5.6318 2.1382
40 1 3.4974 5.6513 0.3677
41 1 8.3018 7.1977 -1.1209
42 1 6.7151 6.3911 -1.1039
43 1 7.3762 7.0864 0.3954
44 1 9.1042 7.2333 1.2088
45 1 5.7754 2.2700 -0.8685
46 1 5.7925 2.3796 0.9083
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001186789250.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:24:19
Heat of formation + Delta-G solvation = -208.545214 kcal
Electronic energy + Delta-G solvation = -31840.966975 eV
Core-core repulsion = 27502.721239 eV
Total energy + Delta-G solvation = -4338.245736 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.161 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.96482 -41.47300 -40.48420 -39.68270 -38.04343 -37.31708 -36.82460 -33.89145
-33.08199 -32.48281 -31.61274 -30.13398 -28.45459 -26.63324 -25.25456 -24.73961
-23.96100 -22.81438 -22.03169 -20.93966 -19.84998 -19.51407 -18.75646 -18.38591
-17.86321 -17.49645 -17.47189 -16.99931 -16.60492 -16.51294 -16.08303 -15.75049
-15.59832 -15.51678 -15.07217 -14.96354 -14.65940 -14.46702 -14.28213 -13.99548
-13.86341 -13.76837 -13.55299 -13.38399 -13.11595 -13.04541 -12.93474 -12.82052
-12.69888 -12.66388 -12.55764 -12.39503 -12.27513 -12.09198 -11.93785 -11.65604
-11.50849 -11.04180 -10.88963 -10.56767 -10.31529 -9.98392 -8.89739 -6.09741
0.46299 0.72379 0.96709 1.41368 1.46332 1.49069 1.79319 1.82179
2.32267 2.66901 2.73200 2.80018 3.02052 3.07763 3.28097 3.50368
3.55819 3.77882 3.93347 3.99876 4.06409 4.08644 4.11295 4.13590
4.23874 4.29516 4.41773 4.48291 4.62779 4.68544 4.72549 4.73066
4.79637 4.81035 4.85058 4.93826 4.99040 5.03141 5.14771 5.29653
5.41434 5.66901 5.79134 6.26867 6.30817 6.48293 6.49801 6.80565
7.30158 7.79060 8.35198
Molecular weight = 339.16amu
Principal moments of inertia in cm(-1)
A = 0.022937 B = 0.003242 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.457922 B = 8633.430458 C = 8962.867497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.049 3.951
3 O -0.332 6.332
4 C 0.489 3.511
5 O -0.526 6.526
6 C -0.106 4.106
7 C 0.369 3.631
8 C -0.200 4.200
9 O -0.467 6.467
10 C -0.093 4.093
11 C -0.153 4.153
12 C 0.356 3.644
13 O -0.473 6.473
14 C -0.158 4.158
15 H 0.150 0.850
16 C 0.440 3.560
17 O -0.633 6.633
18 N -0.453 5.453
19 C 0.093 3.907
20 C -0.444 4.444
21 H 0.058 0.942
22 C -0.022 4.022
23 N -0.876 5.876
24 Si 1.124 2.876
25 H -0.268 1.268
26 H -0.277 1.277
27 H -0.265 1.265
28 C -0.054 4.054
29 H 0.077 0.923
30 H 0.077 0.923
31 H 0.093 0.907
32 H 0.065 0.935
33 H 0.068 0.932
34 H 0.140 0.860
35 H 0.097 0.903
36 H 0.119 0.881
37 H 0.084 0.916
38 H 0.158 0.842
39 H 0.133 0.867
40 H 0.135 0.865
41 H 0.061 0.939
42 H 0.073 0.927
43 H 0.047 0.953
44 H 0.266 0.734
45 H 0.058 0.942
46 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.789 -5.837 -2.847 30.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.025 4.025
3 O -0.248 6.248
4 C 0.332 3.668
5 O -0.414 6.414
6 C -0.108 4.108
7 C 0.245 3.755
8 C -0.256 4.256
9 O -0.341 6.341
10 C -0.130 4.130
11 C -0.190 4.190
12 C 0.231 3.769
13 O -0.347 6.347
14 C -0.180 4.180
15 H 0.167 0.833
16 C 0.230 3.770
17 O -0.521 6.521
18 N -0.171 5.171
19 C -0.051 4.051
20 C -0.571 4.571
21 H 0.076 0.924
22 C -0.226 4.226
23 N -0.509 5.509
24 Si 0.943 3.057
25 H -0.192 1.192
26 H -0.203 1.203
27 H -0.190 1.190
28 C -0.093 4.093
29 H 0.096 0.904
30 H 0.096 0.904
31 H 0.112 0.888
32 H 0.083 0.917
33 H 0.086 0.914
34 H 0.157 0.843
35 H 0.116 0.884
36 H 0.137 0.863
37 H 0.103 0.897
38 H 0.175 0.825
39 H 0.151 0.849
40 H 0.153 0.847
41 H 0.080 0.920
42 H 0.091 0.909
43 H 0.066 0.934
44 H 0.076 0.924
45 H 0.077 0.923
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -27.268 -5.021 -2.928 27.881
hybrid contribution -0.140 -1.739 0.421 1.795
sum -27.408 -6.761 -2.507 28.341
Atomic orbital electron populations
1.21836 0.89353 1.04411 1.04507 1.23436 0.97599 0.78801 1.02621
1.86443 1.21311 1.33863 1.83169 1.22684 0.81744 0.90296 0.72095
1.90744 1.61608 1.43444 1.45583 1.21462 0.95170 0.92110 1.02075
1.24949 0.94334 0.74057 0.82124 1.22529 0.88910 1.07909 1.06225
1.90393 1.58757 1.41255 1.43661 1.21737 1.05862 0.92277 0.93088
1.22447 0.88899 0.99209 1.08426 1.25390 0.94127 0.76197 0.81144
1.90490 1.65104 1.36934 1.42132 1.22355 0.92335 0.99446 1.03829
0.83314 1.20493 0.89384 0.84756 0.82387 1.90457 1.74874 1.32724
1.54014 1.43743 1.05937 1.08575 1.58813 1.21717 0.97253 0.86166
0.99948 1.20375 0.81885 0.98242 1.56551 0.92363 1.27915 1.08382
0.91459 0.94828 1.70839 1.21549 1.36263 1.22204 0.82856 0.69516
0.76939 0.76412 1.19238 1.20251 1.18988 1.20845 0.91548 0.93559
1.03306 0.90354 0.90415 0.88805 0.91665 0.91386 0.84256 0.88415
0.86251 0.89715 0.82465 0.84931 0.84700 0.91975 0.90858 0.93426
0.92392 0.92289 0.91934
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.60 10.29 71.98 0.74 0.15 16
2 C 0.05 0.56 6.19 71.98 0.45 1.00 16
3 O -0.33 -4.52 7.55 -51.37 -0.39 -4.91 16
4 C 0.49 11.07 6.52 71.24 0.46 11.54 16
5 O -0.53 -16.82 15.69 21.97 0.34 -16.47 16
6 C -0.11 -2.41 0.58 -53.70 -0.03 -2.44 16
7 C 0.37 7.15 4.48 29.10 0.13 7.29 16
8 C -0.20 -1.48 9.67 71.23 0.69 -0.79 16
9 O -0.47 -13.11 14.16 -1.45 -0.02 -13.13 16
10 C -0.09 -1.37 4.54 30.66 0.14 -1.23 16
11 C -0.15 -2.72 5.79 30.11 0.17 -2.54 16
12 C 0.36 12.47 5.93 29.46 0.17 12.65 16
13 O -0.47 -21.34 14.79 -1.45 -0.02 -21.36 16
14 C -0.16 -6.49 1.55 -12.03 -0.02 -6.50 16
15 H 0.15 5.74 4.23 -2.39 -0.01 5.73 16
16 C 0.44 24.98 6.37 87.66 0.56 25.54 16
17 O -0.63 -41.39 15.60 -3.06 -0.05 -41.43 16
18 N -0.45 -26.59 2.84 -658.89 -1.87 -28.46 16
19 C 0.09 4.57 7.41 127.77 0.95 5.52 16
20 C -0.44 -28.39 9.06 84.04 0.76 -27.63 16
21 H 0.06 4.02 7.59 -2.91 -0.02 4.00 16
22 C -0.02 -1.28 4.54 84.92 0.39 -0.90 16
23 N -0.88 -53.08 12.64 21.66 0.27 -52.80 16
24 Si 1.12 51.33 30.02 68.60 2.06 53.39 16
25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
27 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16
28 C -0.05 -2.01 2.53 30.66 0.08 -1.93 16
29 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16
30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16
31 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16
32 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16
33 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16
34 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16
35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16
36 H 0.12 0.55 5.49 -2.39 -0.01 0.53 16
37 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16
38 H 0.16 0.64 7.76 -2.39 -0.02 0.62 16
39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16
40 H 0.14 1.50 7.32 -2.39 -0.02 1.49 16
41 H 0.06 3.14 7.08 -2.39 -0.02 3.13 16
42 H 0.07 3.00 6.30 -2.38 -0.02 2.98 16
43 H 0.05 2.41 5.65 -2.39 -0.01 2.39 16
44 H 0.27 16.75 6.58 -92.71 -0.61 16.14 16
45 H 0.06 2.48 8.00 -2.39 -0.02 2.46 16
46 H 0.06 2.62 7.80 -2.39 -0.02 2.60 16
Total: -1.00 -97.32 367.11 7.14 -90.18
By element:
Atomic # 1 Polarization: 14.13 SS G_CDS: 1.17 Total: 15.30 kcal
Atomic # 6 Polarization: 14.08 SS G_CDS: 5.64 Total: 19.71 kcal
Atomic # 7 Polarization: -79.67 SS G_CDS: -1.60 Total: -81.26 kcal
Atomic # 8 Polarization: -97.18 SS G_CDS: -0.13 Total: -97.31 kcal
Atomic # 14 Polarization: 51.33 SS G_CDS: 2.06 Total: 53.39 kcal
Total: -97.32 7.14 -90.18 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001186789250.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.368 kcal
(2) G-P(sol) polarization free energy of solvation -97.319 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.141 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.178 kcal
(6) G-S(sol) free energy of system = (1) + (5) -208.545 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds