Wall clock time and date at job start Tue Mar 31 2020 22:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.46826 * 2 1 4 4 C 1.34225 * 116.99563 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00383 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99537 * 180.02562 * 4 3 2 7 7 C 1.50698 * 109.41177 * 300.14008 * 6 4 3 8 8 C 1.50694 * 120.00037 * 59.86156 * 7 6 4 9 9 O 1.20761 * 119.99708 * 239.85789 * 7 6 4 10 10 C 1.52957 * 109.41508 * 60.00146 * 6 4 3 11 11 C 1.53228 * 109.40649 * 183.70294 * 10 6 4 12 12 C 1.51272 * 108.53429 * 305.37302 * 11 10 6 13 13 O 1.20759 * 120.84890 * 231.36520 * 12 11 10 14 14 C 1.51269 * 118.30211 * 51.34885 * 12 11 10 15 15 H 1.08997 * 109.62714 * 68.55719 * 14 12 11 16 16 C 1.50704 * 109.62438 * 188.93731 * 14 12 11 17 17 O 1.21290 * 119.99968 * 108.79442 * 16 14 12 18 18 N 1.34776 * 119.99699 * 288.79417 * 16 14 12 19 19 C 1.46494 * 120.00303 * 4.72418 * 18 16 14 20 20 C 1.37102 * 119.99771 * 184.72614 * 18 16 14 21 21 H 1.08008 * 119.99843 * 22.16666 * 20 18 16 22 22 C 1.38941 * 120.00070 * 202.17085 * 20 18 16 23 23 N 1.31409 * 120.00219 * 31.30696 * 22 20 18 24 24 Si 1.86808 * 120.00143 * 211.31000 * 22 20 18 25 25 H 1.48497 * 109.47242 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47078 * 299.99963 * 24 22 20 27 27 H 1.48506 * 109.46950 * 59.99478 * 24 22 20 28 28 C 1.52963 * 109.41025 * 180.35457 * 6 4 3 29 29 H 1.09002 * 109.47071 * 299.99027 * 1 2 3 30 30 H 1.08997 * 109.47390 * 59.99816 * 1 2 3 31 31 H 1.09002 * 109.46897 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46515 * 240.00450 * 2 1 3 33 33 H 1.08997 * 109.47390 * 120.00184 * 2 1 3 34 34 H 1.09003 * 109.47264 * 89.99805 * 8 7 6 35 35 H 1.09002 * 109.47424 * 209.99878 * 8 7 6 36 36 H 1.08998 * 109.47160 * 329.99763 * 8 7 6 37 37 H 1.09005 * 109.48484 * 63.71974 * 10 6 4 38 38 H 1.09000 * 109.47955 * 303.68003 * 10 6 4 39 39 H 1.08994 * 109.62694 * 185.65376 * 11 10 6 40 40 H 1.09004 * 109.62368 * 65.08468 * 11 10 6 41 41 H 1.09002 * 109.47425 * 204.67367 * 19 18 16 42 42 H 1.09006 * 109.47483 * 324.67810 * 19 18 16 43 43 H 1.08999 * 109.46909 * 84.67552 * 19 18 16 44 44 H 0.97002 * 120.00266 * 6.20330 * 23 22 20 45 45 H 1.08995 * 109.48382 * 56.31210 * 28 6 4 46 46 H 1.09004 * 109.47949 * 296.27326 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.4519 3.6738 -1.2285 8 6 1.9786 3.8854 -1.4638 9 8 4.2571 4.0943 -2.0242 10 6 3.4490 3.6823 1.2500 11 6 3.9584 5.1267 1.2046 12 6 5.4601 5.1015 1.0234 13 8 6.1832 5.7294 1.7590 14 6 6.0327 4.2693 -0.1025 15 1 5.7666 4.7165 -1.0603 16 6 7.5328 4.2060 0.0272 17 8 8.0694 3.1714 0.3629 18 7 8.2781 5.2992 -0.2299 19 6 7.6261 6.5752 -0.5343 20 6 9.6464 5.2169 -0.2065 21 1 10.1324 4.2618 -0.3414 22 6 10.4080 6.3622 -0.0093 23 7 9.9399 7.3435 0.7288 24 14 12.0974 6.5070 -0.7933 25 1 12.6999 7.8155 -0.4328 26 1 12.9672 5.4087 -0.3014 27 1 11.9677 6.4122 -2.2697 28 6 5.4480 2.8559 -0.0097 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6686 4.8246 -1.0055 35 1 1.7835 3.9224 -2.5356 36 1 1.4180 3.0624 -1.0207 37 1 3.8407 3.1863 2.1382 38 1 2.3595 3.6820 1.2839 39 1 3.7107 5.6318 2.1382 40 1 3.4974 5.6513 0.3677 41 1 8.3018 7.1977 -1.1209 42 1 6.7151 6.3911 -1.1039 43 1 7.3762 7.0864 0.3954 44 1 9.1042 7.2333 1.2088 45 1 5.7754 2.2700 -0.8685 46 1 5.7925 2.3796 0.9083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186789250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:19 Heat of formation + Delta-G solvation = -208.545214 kcal Electronic energy + Delta-G solvation = -31840.966975 eV Core-core repulsion = 27502.721239 eV Total energy + Delta-G solvation = -4338.245736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.96482 -41.47300 -40.48420 -39.68270 -38.04343 -37.31708 -36.82460 -33.89145 -33.08199 -32.48281 -31.61274 -30.13398 -28.45459 -26.63324 -25.25456 -24.73961 -23.96100 -22.81438 -22.03169 -20.93966 -19.84998 -19.51407 -18.75646 -18.38591 -17.86321 -17.49645 -17.47189 -16.99931 -16.60492 -16.51294 -16.08303 -15.75049 -15.59832 -15.51678 -15.07217 -14.96354 -14.65940 -14.46702 -14.28213 -13.99548 -13.86341 -13.76837 -13.55299 -13.38399 -13.11595 -13.04541 -12.93474 -12.82052 -12.69888 -12.66388 -12.55764 -12.39503 -12.27513 -12.09198 -11.93785 -11.65604 -11.50849 -11.04180 -10.88963 -10.56767 -10.31529 -9.98392 -8.89739 -6.09741 0.46299 0.72379 0.96709 1.41368 1.46332 1.49069 1.79319 1.82179 2.32267 2.66901 2.73200 2.80018 3.02052 3.07763 3.28097 3.50368 3.55819 3.77882 3.93347 3.99876 4.06409 4.08644 4.11295 4.13590 4.23874 4.29516 4.41773 4.48291 4.62779 4.68544 4.72549 4.73066 4.79637 4.81035 4.85058 4.93826 4.99040 5.03141 5.14771 5.29653 5.41434 5.66901 5.79134 6.26867 6.30817 6.48293 6.49801 6.80565 7.30158 7.79060 8.35198 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.003242 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.457922 B = 8633.430458 C = 8962.867497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.332 6.332 4 C 0.489 3.511 5 O -0.526 6.526 6 C -0.106 4.106 7 C 0.369 3.631 8 C -0.200 4.200 9 O -0.467 6.467 10 C -0.093 4.093 11 C -0.153 4.153 12 C 0.356 3.644 13 O -0.473 6.473 14 C -0.158 4.158 15 H 0.150 0.850 16 C 0.440 3.560 17 O -0.633 6.633 18 N -0.453 5.453 19 C 0.093 3.907 20 C -0.444 4.444 21 H 0.058 0.942 22 C -0.022 4.022 23 N -0.876 5.876 24 Si 1.124 2.876 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.054 4.054 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.158 0.842 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.266 0.734 45 H 0.058 0.942 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.789 -5.837 -2.847 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.248 6.248 4 C 0.332 3.668 5 O -0.414 6.414 6 C -0.108 4.108 7 C 0.245 3.755 8 C -0.256 4.256 9 O -0.341 6.341 10 C -0.130 4.130 11 C -0.190 4.190 12 C 0.231 3.769 13 O -0.347 6.347 14 C -0.180 4.180 15 H 0.167 0.833 16 C 0.230 3.770 17 O -0.521 6.521 18 N -0.171 5.171 19 C -0.051 4.051 20 C -0.571 4.571 21 H 0.076 0.924 22 C -0.226 4.226 23 N -0.509 5.509 24 Si 0.943 3.057 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.190 1.190 28 C -0.093 4.093 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.103 0.897 38 H 0.175 0.825 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.268 -5.021 -2.928 27.881 hybrid contribution -0.140 -1.739 0.421 1.795 sum -27.408 -6.761 -2.507 28.341 Atomic orbital electron populations 1.21836 0.89353 1.04411 1.04507 1.23436 0.97599 0.78801 1.02621 1.86443 1.21311 1.33863 1.83169 1.22684 0.81744 0.90296 0.72095 1.90744 1.61608 1.43444 1.45583 1.21462 0.95170 0.92110 1.02075 1.24949 0.94334 0.74057 0.82124 1.22529 0.88910 1.07909 1.06225 1.90393 1.58757 1.41255 1.43661 1.21737 1.05862 0.92277 0.93088 1.22447 0.88899 0.99209 1.08426 1.25390 0.94127 0.76197 0.81144 1.90490 1.65104 1.36934 1.42132 1.22355 0.92335 0.99446 1.03829 0.83314 1.20493 0.89384 0.84756 0.82387 1.90457 1.74874 1.32724 1.54014 1.43743 1.05937 1.08575 1.58813 1.21717 0.97253 0.86166 0.99948 1.20375 0.81885 0.98242 1.56551 0.92363 1.27915 1.08382 0.91459 0.94828 1.70839 1.21549 1.36263 1.22204 0.82856 0.69516 0.76939 0.76412 1.19238 1.20251 1.18988 1.20845 0.91548 0.93559 1.03306 0.90354 0.90415 0.88805 0.91665 0.91386 0.84256 0.88415 0.86251 0.89715 0.82465 0.84931 0.84700 0.91975 0.90858 0.93426 0.92392 0.92289 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 10.29 71.98 0.74 0.15 16 2 C 0.05 0.56 6.19 71.98 0.45 1.00 16 3 O -0.33 -4.52 7.55 -51.37 -0.39 -4.91 16 4 C 0.49 11.07 6.52 71.24 0.46 11.54 16 5 O -0.53 -16.82 15.69 21.97 0.34 -16.47 16 6 C -0.11 -2.41 0.58 -53.70 -0.03 -2.44 16 7 C 0.37 7.15 4.48 29.10 0.13 7.29 16 8 C -0.20 -1.48 9.67 71.23 0.69 -0.79 16 9 O -0.47 -13.11 14.16 -1.45 -0.02 -13.13 16 10 C -0.09 -1.37 4.54 30.66 0.14 -1.23 16 11 C -0.15 -2.72 5.79 30.11 0.17 -2.54 16 12 C 0.36 12.47 5.93 29.46 0.17 12.65 16 13 O -0.47 -21.34 14.79 -1.45 -0.02 -21.36 16 14 C -0.16 -6.49 1.55 -12.03 -0.02 -6.50 16 15 H 0.15 5.74 4.23 -2.39 -0.01 5.73 16 16 C 0.44 24.98 6.37 87.66 0.56 25.54 16 17 O -0.63 -41.39 15.60 -3.06 -0.05 -41.43 16 18 N -0.45 -26.59 2.84 -658.89 -1.87 -28.46 16 19 C 0.09 4.57 7.41 127.77 0.95 5.52 16 20 C -0.44 -28.39 9.06 84.04 0.76 -27.63 16 21 H 0.06 4.02 7.59 -2.91 -0.02 4.00 16 22 C -0.02 -1.28 4.54 84.92 0.39 -0.90 16 23 N -0.88 -53.08 12.64 21.66 0.27 -52.80 16 24 Si 1.12 51.33 30.02 68.60 2.06 53.39 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 28 C -0.05 -2.01 2.53 30.66 0.08 -1.93 16 29 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 33 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 34 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 0.55 5.49 -2.39 -0.01 0.53 16 37 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.16 0.64 7.76 -2.39 -0.02 0.62 16 39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.14 1.50 7.32 -2.39 -0.02 1.49 16 41 H 0.06 3.14 7.08 -2.39 -0.02 3.13 16 42 H 0.07 3.00 6.30 -2.38 -0.02 2.98 16 43 H 0.05 2.41 5.65 -2.39 -0.01 2.39 16 44 H 0.27 16.75 6.58 -92.71 -0.61 16.14 16 45 H 0.06 2.48 8.00 -2.39 -0.02 2.46 16 46 H 0.06 2.62 7.80 -2.39 -0.02 2.60 16 Total: -1.00 -97.32 367.11 7.14 -90.18 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.17 Total: 15.30 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 5.64 Total: 19.71 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.60 Total: -81.26 kcal Atomic # 8 Polarization: -97.18 SS G_CDS: -0.13 Total: -97.31 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.06 Total: 53.39 kcal Total: -97.32 7.14 -90.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186789250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.368 kcal (2) G-P(sol) polarization free energy of solvation -97.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds