Wall clock time and date at job start Tue Mar 31 2020 22:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99919 * 2 1 4 4 C 1.50699 * 109.47571 * 66.04434 * 3 2 1 5 5 C 1.35347 * 126.91245 * 95.01781 * 4 3 2 6 6 N 1.33784 * 106.49612 * 179.97438 * 5 4 3 7 7 N 1.28635 * 108.88117 * 0.02562 * 6 5 4 8 8 N 1.28718 * 110.18019 * 359.75912 * 7 6 5 9 9 C 1.46503 * 125.86629 * 180.24007 * 8 7 6 10 10 C 1.46899 * 111.00130 * 236.04207 * 2 1 3 11 11 H 1.08992 * 110.88271 * 67.83947 * 10 2 1 12 12 C 1.55153 * 111.00423 * 303.95558 * 10 2 1 13 13 C 1.54320 * 102.94298 * 206.42560 * 12 10 2 14 14 N 1.47017 * 107.27172 * 22.19309 * 13 12 10 15 15 C 1.34775 * 125.65188 * 181.02607 * 14 13 12 16 16 O 1.21282 * 120.00577 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99768 * 0.02562 * 15 14 13 18 18 S 1.81002 * 109.47349 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99746 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46889 * 89.99690 * 23 21 19 25 25 H 1.48494 * 109.47191 * 209.99639 * 23 21 19 26 26 H 1.48501 * 109.46989 * 330.00246 * 23 21 19 27 27 C 1.47423 * 108.70278 * 1.28711 * 14 13 12 28 28 H 1.08992 * 109.47079 * 183.95276 * 1 2 3 29 29 H 1.08994 * 109.47188 * 303.95855 * 1 2 3 30 30 H 1.09008 * 109.46435 * 63.95836 * 1 2 3 31 31 H 1.09007 * 109.46766 * 186.04365 * 3 2 1 32 32 H 1.08998 * 109.47187 * 306.04159 * 3 2 1 33 33 H 1.07997 * 126.75781 * 359.97438 * 5 4 3 34 34 H 1.08993 * 109.46629 * 270.17137 * 9 8 7 35 35 H 1.09000 * 109.46909 * 30.17398 * 9 8 7 36 36 H 1.08997 * 109.46661 * 150.17174 * 9 8 7 37 37 H 1.09001 * 110.72191 * 88.06075 * 12 10 2 38 38 H 1.08998 * 110.87582 * 324.85843 * 12 10 2 39 39 H 1.09008 * 109.88259 * 262.77746 * 13 12 10 40 40 H 1.09003 * 109.88478 * 141.61578 * 13 12 10 41 41 H 1.09005 * 109.46867 * 60.00428 * 17 15 14 42 42 H 1.09000 * 109.47235 * 300.00468 * 17 15 14 43 43 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.36738 * 94.48486 * 27 14 13 45 45 H 1.08997 * 110.36891 * 216.80151 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 6 2.4072 2.1374 2.4076 6 7 1.6936 2.8185 3.3113 7 7 0.5566 3.1288 2.7959 8 7 0.4820 2.6900 1.5881 9 6 -0.6585 2.8555 0.6836 10 6 1.9955 -0.7660 -1.1375 11 1 1.7761 -0.2633 -2.0793 12 6 1.4395 -2.2145 -1.1375 13 6 2.5363 -3.0057 -1.8808 14 7 3.7815 -2.2314 -1.7739 15 6 4.9690 -2.5755 -2.3105 16 8 5.9344 -1.8575 -2.1576 17 6 5.0973 -3.8525 -3.1004 18 16 6.8011 -4.0324 -3.6841 19 6 6.6681 -5.5610 -4.5503 20 1 5.7207 -6.0779 -4.5909 21 6 7.7806 -6.1002 -5.1813 22 7 7.6812 -7.2423 -5.8280 23 14 9.4190 -5.2057 -5.1117 24 1 10.1816 -5.6616 -3.9218 25 1 10.1971 -5.5013 -6.3414 26 1 9.1807 -3.7430 -5.0162 27 6 3.5175 -1.0194 -0.9773 28 1 -0.3633 -1.0251 0.0708 29 1 -0.3633 0.5740 0.8523 30 1 -0.3632 0.4512 -0.9234 31 1 3.0798 1.3443 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 3.4022 1.7382 2.5377 34 1 -1.3441 2.0172 0.8064 35 1 -1.1761 3.7857 0.9181 36 1 -0.3036 2.8868 -0.3465 37 1 0.4943 -2.2648 -1.6781 38 1 1.3200 -2.5847 -0.1193 39 1 2.2622 -3.1240 -2.9292 40 1 2.6668 -3.9836 -1.4172 41 1 4.4215 -3.8204 -3.9551 42 1 4.8397 -4.7000 -2.4653 43 1 8.4588 -7.6194 -6.2687 44 1 3.7677 -1.1916 0.0695 45 1 4.0855 -0.1761 -1.3701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:59 Heat of formation + Delta-G solvation = 89.032076 kcal Electronic energy + Delta-G solvation = -26674.522229 eV Core-core repulsion = 22856.518786 eV Total energy + Delta-G solvation = -3818.003443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.67331 -40.21594 -38.45757 -36.39316 -34.96374 -32.50983 -32.45286 -30.94091 -30.03279 -28.90470 -28.27489 -27.30459 -25.64928 -24.66228 -23.27430 -22.86967 -21.14179 -20.58950 -19.48190 -17.87387 -17.67480 -17.46390 -16.95171 -16.74822 -15.73587 -15.42261 -15.30212 -15.09999 -14.95300 -14.60588 -14.19953 -14.00912 -13.90092 -13.75336 -13.64900 -13.41616 -13.05027 -12.86629 -12.79600 -12.69018 -12.13919 -12.12022 -11.96190 -11.67029 -11.37563 -11.34445 -11.28233 -11.14931 -11.02370 -10.63517 -10.49329 -9.88136 -9.61318 -9.58825 -9.02303 -9.01625 -8.65380 -8.52574 -6.94733 -6.30971 -4.03023 1.12070 1.89337 2.23079 2.59849 2.88498 3.07080 3.31795 3.39201 3.48989 3.59188 3.82306 3.91886 4.01946 4.23386 4.29156 4.31420 4.31763 4.58158 4.59216 4.60940 4.66621 4.70184 4.79048 4.91750 4.98826 5.02161 5.08130 5.13515 5.14135 5.27535 5.35623 5.39039 5.48057 5.54937 5.62196 5.67056 5.80147 5.84004 5.97819 6.10425 6.20323 6.29499 6.43679 7.49549 7.91993 8.14207 8.37215 8.39353 9.15161 10.78146 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.002009 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.508720 B =13931.305004 C =14610.356120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.524 5.524 3 C 0.125 3.875 4 C -0.010 4.010 5 C -0.028 4.028 6 N -0.270 5.270 7 N -0.088 5.088 8 N -0.291 5.291 9 C 0.074 3.926 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.122 4.122 13 C 0.102 3.898 14 N -0.625 5.625 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.117 4.117 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.117 3.883 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.110 0.890 32 H 0.051 0.949 33 H 0.192 0.808 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.079 0.921 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.172 17.626 10.562 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.004 4.004 4 C -0.142 4.142 5 C -0.186 4.186 6 N -0.135 5.135 7 N -0.067 5.067 8 N -0.086 5.086 9 C -0.067 4.067 10 C -0.041 4.041 11 H 0.082 0.918 12 C -0.160 4.160 13 C -0.022 4.022 14 N -0.362 5.362 15 C 0.337 3.663 16 O -0.391 6.391 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.006 4.006 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.209 0.791 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.161 19.073 12.177 30.307 hybrid contribution -0.365 -1.013 -1.982 2.256 sum -20.526 18.060 10.195 29.179 Atomic orbital electron populations 1.22713 0.87108 1.03498 1.00214 1.61960 1.08033 1.12108 1.42805 1.20567 1.02338 0.87543 0.89994 1.21952 0.88384 1.03490 1.00407 1.23430 1.02486 1.02980 0.89707 1.75130 0.98817 1.13663 1.25902 1.78329 1.16345 1.19759 0.92275 1.47229 1.13632 1.36176 1.11523 1.22417 0.86444 1.05422 0.92437 1.22884 0.95219 0.94314 0.91661 0.91784 1.22720 0.97843 0.93328 1.02146 1.22018 0.83498 0.95691 1.00951 1.48362 1.09482 1.23833 1.54559 1.19990 0.80755 0.87113 0.78463 1.90712 1.36403 1.52965 1.58980 1.23252 1.04742 0.96868 1.01935 1.84801 1.06822 1.31649 1.68309 1.22299 1.01022 1.05522 1.38025 0.89384 1.24715 0.98841 0.94288 0.93480 1.69936 1.31130 1.17648 1.32908 0.86734 0.83702 0.82860 0.78555 1.19168 1.19939 1.15923 1.22139 0.93297 0.88438 0.96731 0.90247 0.91500 0.95052 0.87146 0.93075 0.79140 0.88664 0.87852 0.88537 0.90061 0.89261 0.91010 0.90738 0.88556 0.88522 0.91928 0.90254 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 8.07 60.07 0.48 0.54 16 2 N -0.52 -3.14 4.65 -233.61 -1.09 -4.23 16 3 C 0.12 0.70 5.13 -4.98 -0.03 0.67 16 4 C -0.01 -0.08 5.77 -82.09 -0.47 -0.55 16 5 C -0.03 -0.26 11.99 -17.73 -0.21 -0.47 16 6 N -0.27 -3.22 12.41 30.24 0.38 -2.85 16 7 N -0.09 -0.95 13.17 60.35 0.79 -0.16 16 8 N -0.29 -2.15 3.36 -63.79 -0.21 -2.36 16 9 C 0.07 0.20 9.58 59.85 0.57 0.78 16 10 C 0.07 0.46 2.72 -65.45 -0.18 0.28 16 11 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 12 C -0.12 -0.77 5.09 -24.90 -0.13 -0.89 16 13 C 0.10 0.93 6.48 -3.07 -0.02 0.91 16 14 N -0.62 -7.93 3.32 -170.38 -0.57 -8.50 16 15 C 0.55 9.67 7.87 -10.98 -0.09 9.59 16 16 O -0.52 -11.02 16.12 5.56 0.09 -10.93 16 17 C -0.12 -2.24 5.35 36.01 0.19 -2.05 16 18 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 23 Si 0.86 21.60 27.74 -169.99 -4.72 16.88 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 27 C 0.12 1.18 5.63 -2.41 -0.01 1.17 16 28 H 0.08 0.33 6.99 -51.93 -0.36 -0.03 16 29 H 0.07 0.32 4.36 -51.93 -0.23 0.09 16 30 H 0.03 0.09 8.14 -51.92 -0.42 -0.33 16 31 H 0.11 0.62 6.95 -51.93 -0.36 0.26 16 32 H 0.05 0.21 7.29 -51.93 -0.38 -0.17 16 33 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.10 0.14 6.43 -51.93 -0.33 -0.20 16 35 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.10 0.09 7.22 -51.93 -0.37 -0.28 16 37 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 38 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -36.89 376.12 -7.21 -44.10 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -6.66 Total: -4.68 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 0.33 Total: -1.88 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.08 Total: -43.59 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.72 Total: 16.88 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.89 -7.21 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.128 kcal (2) G-P(sol) polarization free energy of solvation -36.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds