Wall clock time and date at job start Tue Mar 31 2020 22:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99919 * 2 1 4 4 C 1.50699 * 109.47571 * 66.04434 * 3 2 1 5 5 C 1.35347 * 126.91245 * 95.01781 * 4 3 2 6 6 N 1.33784 * 106.49612 * 179.97438 * 5 4 3 7 7 N 1.28635 * 108.88117 * 0.02562 * 6 5 4 8 8 N 1.28718 * 110.18019 * 359.75912 * 7 6 5 9 9 C 1.46503 * 125.86629 * 180.24007 * 8 7 6 10 10 C 1.46899 * 111.00130 * 236.04207 * 2 1 3 11 11 H 1.08992 * 110.88271 * 67.83947 * 10 2 1 12 12 C 1.55153 * 111.00423 * 303.95558 * 10 2 1 13 13 C 1.54320 * 102.94298 * 206.42560 * 12 10 2 14 14 N 1.47017 * 107.27172 * 22.19309 * 13 12 10 15 15 C 1.34775 * 125.65188 * 181.02607 * 14 13 12 16 16 O 1.21282 * 120.00577 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99768 * 0.02562 * 15 14 13 18 18 S 1.81002 * 109.47349 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99746 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46889 * 89.99690 * 23 21 19 25 25 H 1.48494 * 109.47191 * 209.99639 * 23 21 19 26 26 H 1.48501 * 109.46989 * 330.00246 * 23 21 19 27 27 C 1.47423 * 108.70278 * 1.28711 * 14 13 12 28 28 H 1.08992 * 109.47079 * 183.95276 * 1 2 3 29 29 H 1.08994 * 109.47188 * 303.95855 * 1 2 3 30 30 H 1.09008 * 109.46435 * 63.95836 * 1 2 3 31 31 H 1.09007 * 109.46766 * 186.04365 * 3 2 1 32 32 H 1.08998 * 109.47187 * 306.04159 * 3 2 1 33 33 H 1.07997 * 126.75781 * 359.97438 * 5 4 3 34 34 H 1.08993 * 109.46629 * 270.17137 * 9 8 7 35 35 H 1.09000 * 109.46909 * 30.17398 * 9 8 7 36 36 H 1.08997 * 109.46661 * 150.17174 * 9 8 7 37 37 H 1.09001 * 110.72191 * 88.06075 * 12 10 2 38 38 H 1.08998 * 110.87582 * 324.85843 * 12 10 2 39 39 H 1.09008 * 109.88259 * 262.77746 * 13 12 10 40 40 H 1.09003 * 109.88478 * 141.61578 * 13 12 10 41 41 H 1.09005 * 109.46867 * 60.00428 * 17 15 14 42 42 H 1.09000 * 109.47235 * 300.00468 * 17 15 14 43 43 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.36738 * 94.48486 * 27 14 13 45 45 H 1.08997 * 110.36891 * 216.80151 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 6 2.4072 2.1374 2.4076 6 7 1.6936 2.8185 3.3113 7 7 0.5566 3.1288 2.7959 8 7 0.4820 2.6900 1.5881 9 6 -0.6585 2.8555 0.6836 10 6 1.9955 -0.7660 -1.1375 11 1 1.7761 -0.2633 -2.0793 12 6 1.4395 -2.2145 -1.1375 13 6 2.5363 -3.0057 -1.8808 14 7 3.7815 -2.2314 -1.7739 15 6 4.9690 -2.5755 -2.3105 16 8 5.9344 -1.8575 -2.1576 17 6 5.0973 -3.8525 -3.1004 18 16 6.8011 -4.0324 -3.6841 19 6 6.6681 -5.5610 -4.5503 20 1 5.7207 -6.0779 -4.5909 21 6 7.7806 -6.1002 -5.1813 22 7 7.6812 -7.2423 -5.8280 23 14 9.4190 -5.2057 -5.1117 24 1 10.1816 -5.6616 -3.9218 25 1 10.1971 -5.5013 -6.3414 26 1 9.1807 -3.7430 -5.0162 27 6 3.5175 -1.0194 -0.9773 28 1 -0.3633 -1.0251 0.0708 29 1 -0.3633 0.5740 0.8523 30 1 -0.3632 0.4512 -0.9234 31 1 3.0798 1.3443 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 3.4022 1.7382 2.5377 34 1 -1.3441 2.0172 0.8064 35 1 -1.1761 3.7857 0.9181 36 1 -0.3036 2.8868 -0.3465 37 1 0.4943 -2.2648 -1.6781 38 1 1.3200 -2.5847 -0.1193 39 1 2.2622 -3.1240 -2.9292 40 1 2.6668 -3.9836 -1.4172 41 1 4.4215 -3.8204 -3.9551 42 1 4.8397 -4.7000 -2.4653 43 1 8.4588 -7.6194 -6.2687 44 1 3.7677 -1.1916 0.0695 45 1 4.0855 -0.1761 -1.3701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188959542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:59 Heat of formation + Delta-G solvation = 61.062887 kcal Electronic energy + Delta-G solvation = -26675.735064 eV Core-core repulsion = 22856.518786 eV Total energy + Delta-G solvation = -3819.216278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.29374 -41.17408 -39.38313 -37.22459 -35.51755 -34.66964 -33.23529 -31.91836 -30.89088 -29.58677 -29.00865 -27.84551 -27.76641 -25.30492 -24.09224 -23.50007 -21.72467 -21.12713 -20.72244 -19.59999 -18.28799 -18.20092 -17.91224 -17.63375 -17.12114 -16.68404 -16.30464 -16.00609 -15.77989 -15.58829 -15.45521 -14.90429 -14.86000 -14.38744 -14.33983 -14.29343 -13.94998 -13.80898 -13.70593 -13.35220 -13.32339 -13.20798 -13.01117 -12.75590 -12.67904 -12.50267 -12.23799 -11.98714 -11.89936 -11.85952 -11.76226 -11.16797 -11.06050 -11.01587 -10.53504 -10.24317 -9.71773 -9.41284 -9.00357 -8.51201 -6.22243 0.53285 0.96702 1.32058 1.45096 1.47315 1.51972 1.52554 1.55418 2.02593 2.25326 2.67713 2.86649 2.87096 3.26403 3.41067 3.59760 3.66913 3.77772 3.85025 4.05974 4.09560 4.15412 4.19358 4.27955 4.33435 4.40191 4.42018 4.44834 4.51227 4.62910 4.65440 4.69927 4.80862 4.86530 4.90472 4.97874 5.03713 5.16685 5.21704 5.31084 5.61041 5.71138 5.88805 5.95541 6.11729 6.34985 6.93989 7.06019 7.47347 8.60957 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.002009 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.508720 B =13931.305004 C =14610.356120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.535 5.535 3 C 0.128 3.872 4 C 0.002 3.998 5 C -0.049 4.049 6 N -0.311 5.311 7 N -0.119 5.119 8 N -0.280 5.280 9 C 0.060 3.940 10 C 0.084 3.916 11 H 0.077 0.923 12 C -0.110 4.110 13 C 0.090 3.910 14 N -0.615 5.615 15 C 0.548 3.452 16 O -0.563 6.563 17 C -0.102 4.102 18 S -0.177 6.177 19 C -0.527 4.527 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.237 1.237 27 C 0.112 3.888 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.201 0.799 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.277 0.723 44 H 0.074 0.926 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.257 18.525 10.006 31.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.260 5.260 3 C -0.001 4.001 4 C -0.132 4.132 5 C -0.208 4.208 6 N -0.176 5.176 7 N -0.098 5.098 8 N -0.075 5.075 9 C -0.079 4.079 10 C -0.025 4.025 11 H 0.095 0.905 12 C -0.148 4.148 13 C -0.032 4.032 14 N -0.350 5.350 15 C 0.336 3.664 16 O -0.442 6.442 17 C -0.253 4.253 18 S 0.050 5.950 19 C -0.675 4.675 20 H 0.081 0.919 21 C -0.160 4.160 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.160 1.160 27 C -0.011 4.011 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.218 0.782 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.337 19.981 11.641 32.151 hybrid contribution 0.075 -1.299 -1.776 2.201 sum -22.262 18.682 9.865 30.691 Atomic orbital electron populations 1.22776 0.85639 1.04065 1.01152 1.61866 1.09346 1.12185 1.42588 1.20607 1.02434 0.87605 0.89490 1.22174 0.87936 1.02636 1.00451 1.23787 1.03325 1.03383 0.90270 1.75063 0.99776 1.15198 1.27542 1.78233 1.16378 1.21246 0.93934 1.47563 1.14417 1.34599 1.10939 1.22878 0.85601 1.06695 0.92734 1.22707 0.92342 0.94989 0.92444 0.90505 1.22707 0.97772 0.92082 1.02227 1.22374 0.82595 0.95959 1.02296 1.48292 1.09025 1.24856 1.52797 1.19618 0.81810 0.86213 0.78756 1.90692 1.38350 1.54076 1.61069 1.23199 1.00465 0.98646 1.02959 1.84732 1.12468 1.29538 1.68263 1.22434 1.00111 1.06768 1.38174 0.91852 1.25553 1.02149 0.95031 0.93255 1.70012 1.32439 1.18984 1.33904 0.85879 0.79845 0.81578 0.79155 1.18796 1.18321 1.16046 1.22319 0.96087 0.86907 0.95780 0.89769 0.91999 0.92761 0.87423 0.90721 0.78177 0.86940 0.87004 0.86064 0.87132 0.89151 0.89921 0.90497 0.86967 0.87300 0.91371 0.90745 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 8.07 127.69 1.03 1.08 16 2 N -0.53 -4.56 4.65 -893.00 -4.15 -8.71 16 3 C 0.13 1.06 5.13 85.56 0.44 1.50 16 4 C 0.00 0.02 5.77 41.35 0.24 0.26 16 5 C -0.05 -0.90 11.99 83.73 1.00 0.10 16 6 N -0.31 -7.60 12.41 -58.25 -0.72 -8.32 16 7 N -0.12 -2.55 13.17 37.02 0.49 -2.06 16 8 N -0.28 -3.67 3.36 -355.74 -1.20 -4.86 16 9 C 0.06 0.15 9.58 127.77 1.22 1.37 16 10 C 0.08 0.83 2.72 46.38 0.13 0.95 16 11 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 12 C -0.11 -0.92 5.09 31.78 0.16 -0.76 16 13 C 0.09 1.36 6.48 86.73 0.56 1.92 16 14 N -0.61 -14.43 3.32 -811.37 -2.70 -17.13 16 15 C 0.55 18.85 7.87 87.66 0.69 19.54 16 16 O -0.56 -24.05 16.12 -3.04 -0.05 -24.10 16 17 C -0.10 -3.81 5.35 71.24 0.38 -3.42 16 18 S -0.18 -8.86 18.55 -56.49 -1.05 -9.91 16 19 C -0.53 -30.36 10.04 67.96 0.68 -29.67 16 20 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 21 C 0.05 2.66 5.50 84.86 0.47 3.12 16 22 N -0.92 -55.18 13.97 21.65 0.30 -54.88 16 23 Si 0.91 44.67 27.74 68.60 1.90 46.58 16 24 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 27 C 0.11 2.03 5.63 86.93 0.49 2.52 16 28 H 0.08 0.32 6.99 -2.39 -0.02 0.31 16 29 H 0.06 0.36 4.36 -2.39 -0.01 0.35 16 30 H 0.05 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.11 0.99 6.95 -2.38 -0.02 0.97 16 32 H 0.07 0.30 7.29 -2.39 -0.02 0.28 16 33 H 0.20 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.11 -0.06 6.43 -2.39 -0.02 -0.08 16 35 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.12 -0.29 7.22 -2.39 -0.02 -0.31 16 37 H 0.11 0.38 8.10 -2.39 -0.02 0.36 16 38 H 0.09 0.81 8.09 -2.39 -0.02 0.79 16 39 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 43 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.38 7.70 -2.39 -0.02 1.37 16 Total: -1.00 -82.72 376.12 1.28 -81.44 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.96 Total: 3.45 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 7.50 Total: -1.49 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -7.98 Total: -95.97 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.58 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -82.72 1.28 -81.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.502 kcal (2) G-P(sol) polarization free energy of solvation -82.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds