Wall clock time and date at job start Tue Mar 31 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 110.99927 * 2 1 4 4 C 1.50697 * 109.47012 * 66.04468 * 3 2 1 5 5 N 1.30526 * 126.34612 * 90.02573 * 4 3 2 6 6 N 1.28592 * 109.67321 * 179.97438 * 5 4 3 7 7 C 1.30524 * 109.67296 * 0.02562 * 6 5 4 8 8 N 1.35487 * 126.34688 * 269.70872 * 4 3 2 9 9 C 1.46505 * 126.98178 * 0.04267 * 8 4 3 10 10 C 1.46899 * 111.00230 * 236.04759 * 2 1 3 11 11 H 1.08994 * 110.88724 * 67.83449 * 10 2 1 12 12 C 1.55159 * 111.00153 * 303.95498 * 10 2 1 13 13 C 1.54322 * 102.94219 * 206.38852 * 12 10 2 14 14 N 1.47027 * 107.27286 * 22.18709 * 13 12 10 15 15 C 1.34775 * 125.64940 * 181.02285 * 14 13 12 16 16 O 1.21276 * 119.99984 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00022 * 0.03083 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47043 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47048 * 119.99960 * 23 21 19 26 26 H 1.48504 * 109.47465 * 240.00413 * 23 21 19 27 27 C 1.47419 * 108.70258 * 1.29357 * 14 13 12 28 28 H 1.08994 * 109.46883 * 183.95254 * 1 2 3 29 29 H 1.08996 * 109.46935 * 303.95495 * 1 2 3 30 30 H 1.09004 * 109.46739 * 63.95258 * 1 2 3 31 31 H 1.09001 * 109.46864 * 186.04478 * 3 2 1 32 32 H 1.08994 * 109.46950 * 306.04098 * 3 2 1 33 33 H 1.07997 * 126.34619 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47132 * 89.99834 * 9 8 4 35 35 H 1.08995 * 109.46801 * 209.99721 * 9 8 4 36 36 H 1.09001 * 109.46663 * 330.00027 * 9 8 4 37 37 H 1.08992 * 110.72319 * 88.02075 * 12 10 2 38 38 H 1.09007 * 110.71682 * 324.74594 * 12 10 2 39 39 H 1.09003 * 109.88209 * 262.77342 * 13 12 10 40 40 H 1.08996 * 110.01480 * 141.67956 * 13 12 10 41 41 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 42 42 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 43 43 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.37402 * 94.47618 * 27 14 13 45 45 H 1.09001 * 110.36815 * 216.80229 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 7 2.3500 2.0501 2.3916 6 7 1.7423 2.7236 3.3031 7 6 0.6136 3.1804 2.8330 8 7 0.5174 2.7692 1.5455 9 6 -0.5771 3.0456 0.6116 10 6 1.9955 -0.7659 -1.1376 11 1 1.7761 -0.2632 -2.0794 12 6 1.4395 -2.2145 -1.1377 13 6 2.5358 -3.0055 -1.8819 14 7 3.7811 -2.2311 -1.7756 15 6 4.9683 -2.5751 -2.3130 16 8 5.9337 -1.8570 -2.1607 17 6 5.0960 -3.8518 -3.1033 18 16 6.7992 -4.0307 -3.6894 19 6 6.6660 -5.5600 -4.5543 20 1 5.7190 -6.0778 -4.5933 21 6 7.7767 -6.0962 -5.1910 22 7 8.9296 -5.4626 -5.1482 23 14 7.6358 -7.7179 -6.1075 24 1 6.2436 -8.2245 -6.0058 25 1 7.9836 -7.5108 -7.5362 26 1 8.5679 -8.7072 -5.5093 27 6 3.5177 -1.0193 -0.9785 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 -0.1073 3.7797 3.3691 34 1 -1.3298 2.2612 0.6916 35 1 -1.0278 4.0078 0.8547 36 1 -0.1879 3.0732 -0.4062 37 1 0.4940 -2.2646 -1.6776 38 1 1.3228 -2.5828 -0.1184 39 1 2.2610 -3.1234 -2.9301 40 1 2.6676 -3.9844 -1.4210 41 1 4.4197 -3.8197 -3.9575 42 1 4.8390 -4.6995 -2.4682 43 1 9.7060 -5.8374 -5.5929 44 1 3.7685 -1.1917 0.0682 45 1 4.0854 -0.1759 -1.3714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:19 Heat of formation + Delta-G solvation = 70.474345 kcal Electronic energy + Delta-G solvation = -26591.715352 eV Core-core repulsion = 22772.907186 eV Total energy + Delta-G solvation = -3818.808167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.49875 -40.07444 -38.29759 -36.26173 -35.30560 -32.42074 -32.10201 -30.73577 -29.88049 -28.58070 -28.15957 -27.40388 -25.50386 -24.61182 -23.14236 -22.73340 -21.11109 -20.50877 -19.31347 -17.79767 -17.56468 -17.30892 -16.76365 -16.59232 -15.78378 -15.49020 -15.18700 -15.07762 -14.79914 -14.66639 -14.20040 -14.09086 -13.88137 -13.78009 -13.61041 -13.25349 -12.90741 -12.63322 -12.61804 -12.49204 -12.14599 -11.85315 -11.78190 -11.66063 -11.26902 -11.18053 -11.06386 -11.00212 -10.75156 -10.66245 -10.62950 -9.79792 -9.64424 -9.40390 -9.06465 -8.94413 -8.49378 -8.21315 -6.48857 -6.20620 -3.91115 1.35406 1.99402 2.51970 2.85892 3.07727 3.22139 3.24567 3.31038 3.43067 3.67451 3.80150 3.96803 4.09378 4.14764 4.21296 4.33563 4.38989 4.41763 4.63095 4.68102 4.70602 4.83508 4.95963 5.02121 5.09259 5.12562 5.14595 5.22016 5.33411 5.42641 5.45874 5.50923 5.61463 5.70839 5.74061 5.77520 5.82019 5.95476 6.15080 6.31455 6.38239 6.40144 6.54878 7.60712 7.67097 8.36418 8.42223 8.57118 9.24633 10.86849 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.031290 B = 0.001922 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.652295 B =14562.092693 C =15134.182131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.522 5.522 3 C 0.139 3.861 4 C 0.186 3.814 5 N -0.272 5.272 6 N -0.296 5.296 7 C 0.147 3.853 8 N -0.478 5.478 9 C 0.068 3.932 10 C 0.070 3.930 11 H 0.064 0.936 12 C -0.122 4.122 13 C 0.104 3.896 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.513 6.513 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.117 3.883 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.116 0.884 32 H 0.056 0.944 33 H 0.218 0.782 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.081 0.919 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.520 16.056 9.649 33.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.248 5.248 3 C 0.009 3.991 4 C -0.082 4.082 5 N -0.112 5.112 6 N -0.135 5.135 7 C -0.140 4.140 8 N -0.170 5.170 9 C -0.075 4.075 10 C -0.039 4.039 11 H 0.082 0.918 12 C -0.160 4.160 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.387 6.387 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.007 4.007 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.521 16.601 11.161 31.646 hybrid contribution -2.848 -1.126 -2.311 3.837 sum -27.369 15.475 8.851 32.663 Atomic orbital electron populations 1.22587 0.87051 1.03338 1.00038 1.61850 1.07930 1.11847 1.43126 1.20424 1.02971 0.87573 0.88132 1.24598 0.85872 0.98372 0.99363 1.74345 1.24374 1.15705 0.96811 1.74330 1.04500 1.11087 1.23562 1.26461 1.00309 1.04084 0.83155 1.46266 1.18355 1.40031 1.12391 1.22212 0.88470 1.03559 0.93236 1.22877 0.95459 0.94229 0.91358 0.91788 1.22719 0.97791 0.93358 1.02116 1.21969 0.83639 0.95651 1.00714 1.48411 1.09524 1.23796 1.54702 1.20021 0.80635 0.87160 0.78426 1.90718 1.36309 1.52899 1.58787 1.23500 1.08015 0.96514 1.01628 1.85425 1.01163 1.29810 1.67016 1.22897 0.99090 1.07819 1.38444 0.90884 1.24997 0.94507 0.98163 0.95973 1.70028 1.00316 1.38314 1.41572 0.86115 0.78296 0.81921 0.79142 1.19630 1.20597 1.20548 1.22144 0.93061 0.88549 0.96933 0.90265 0.91796 0.95168 0.86611 0.92597 0.76577 0.89697 0.88744 0.89187 0.90134 0.89281 0.91215 0.90915 0.89346 0.89250 0.92232 0.90115 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 8.37 60.06 0.50 0.60 16 2 N -0.52 -4.02 4.65 -233.60 -1.09 -5.10 16 3 C 0.14 1.06 5.23 -4.97 -0.03 1.03 16 4 C 0.19 1.73 6.65 -154.99 -1.03 0.70 16 5 N -0.27 -3.62 12.21 32.79 0.40 -3.21 16 6 N -0.30 -3.62 12.21 29.69 0.36 -3.26 16 7 C 0.15 1.07 12.74 -89.94 -1.15 -0.07 16 8 N -0.48 -2.94 2.76 -122.69 -0.34 -3.28 16 9 C 0.07 0.10 9.78 59.85 0.59 0.68 16 10 C 0.07 0.57 2.72 -65.44 -0.18 0.39 16 11 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 12 C -0.12 -0.90 5.09 -24.90 -0.13 -1.03 16 13 C 0.10 1.07 6.48 -3.06 -0.02 1.05 16 14 N -0.63 -9.02 3.32 -170.38 -0.57 -9.59 16 15 C 0.55 10.71 7.87 -10.99 -0.09 10.63 16 16 O -0.51 -12.10 16.12 5.56 0.09 -12.01 16 17 C -0.15 -3.01 5.35 36.00 0.19 -2.82 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.28 9.50 30.94 0.29 -14.98 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 23 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 C 0.12 1.42 5.63 -2.41 -0.01 1.40 16 28 H 0.08 0.39 6.99 -51.93 -0.36 0.03 16 29 H 0.06 0.34 4.98 -51.93 -0.26 0.08 16 30 H 0.03 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.12 1.02 6.95 -51.93 -0.36 0.66 16 32 H 0.06 0.29 7.19 -51.93 -0.37 -0.08 16 33 H 0.22 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.08 0.03 6.91 -51.93 -0.36 -0.33 16 35 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 36 H 0.09 0.07 7.19 -51.93 -0.37 -0.30 16 37 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 38 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.00 7.71 -51.93 -0.40 0.60 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -39.37 380.26 -9.74 -49.11 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -6.68 Total: -4.96 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.15 Total: -0.42 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.49 Total: -49.99 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.37 -9.74 -49.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.580 kcal (2) G-P(sol) polarization free energy of solvation -39.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds