Wall clock time and date at job start Tue Mar 31 2020 22:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 110.99927 * 2 1 4 4 C 1.50697 * 109.47012 * 66.04468 * 3 2 1 5 5 N 1.30526 * 126.34612 * 90.02573 * 4 3 2 6 6 N 1.28592 * 109.67321 * 179.97438 * 5 4 3 7 7 C 1.30524 * 109.67296 * 0.02562 * 6 5 4 8 8 N 1.35487 * 126.34688 * 269.70872 * 4 3 2 9 9 C 1.46505 * 126.98178 * 0.04267 * 8 4 3 10 10 C 1.46899 * 111.00230 * 236.04759 * 2 1 3 11 11 H 1.08994 * 110.88724 * 67.83449 * 10 2 1 12 12 C 1.55159 * 111.00153 * 303.95498 * 10 2 1 13 13 C 1.54322 * 102.94219 * 206.38852 * 12 10 2 14 14 N 1.47027 * 107.27286 * 22.18709 * 13 12 10 15 15 C 1.34775 * 125.64940 * 181.02285 * 14 13 12 16 16 O 1.21276 * 119.99984 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00022 * 0.03083 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47043 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47048 * 119.99960 * 23 21 19 26 26 H 1.48504 * 109.47465 * 240.00413 * 23 21 19 27 27 C 1.47419 * 108.70258 * 1.29357 * 14 13 12 28 28 H 1.08994 * 109.46883 * 183.95254 * 1 2 3 29 29 H 1.08996 * 109.46935 * 303.95495 * 1 2 3 30 30 H 1.09004 * 109.46739 * 63.95258 * 1 2 3 31 31 H 1.09001 * 109.46864 * 186.04478 * 3 2 1 32 32 H 1.08994 * 109.46950 * 306.04098 * 3 2 1 33 33 H 1.07997 * 126.34619 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47132 * 89.99834 * 9 8 4 35 35 H 1.08995 * 109.46801 * 209.99721 * 9 8 4 36 36 H 1.09001 * 109.46663 * 330.00027 * 9 8 4 37 37 H 1.08992 * 110.72319 * 88.02075 * 12 10 2 38 38 H 1.09007 * 110.71682 * 324.74594 * 12 10 2 39 39 H 1.09003 * 109.88209 * 262.77342 * 13 12 10 40 40 H 1.08996 * 110.01480 * 141.67956 * 13 12 10 41 41 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 42 42 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 43 43 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.37402 * 94.47618 * 27 14 13 45 45 H 1.09001 * 110.36815 * 216.80229 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 7 2.3500 2.0501 2.3916 6 7 1.7423 2.7236 3.3031 7 6 0.6136 3.1804 2.8330 8 7 0.5174 2.7692 1.5455 9 6 -0.5771 3.0456 0.6116 10 6 1.9955 -0.7659 -1.1376 11 1 1.7761 -0.2632 -2.0794 12 6 1.4395 -2.2145 -1.1377 13 6 2.5358 -3.0055 -1.8819 14 7 3.7811 -2.2311 -1.7756 15 6 4.9683 -2.5751 -2.3130 16 8 5.9337 -1.8570 -2.1607 17 6 5.0960 -3.8518 -3.1033 18 16 6.7992 -4.0307 -3.6894 19 6 6.6660 -5.5600 -4.5543 20 1 5.7190 -6.0778 -4.5933 21 6 7.7767 -6.0962 -5.1910 22 7 8.9296 -5.4626 -5.1482 23 14 7.6358 -7.7179 -6.1075 24 1 6.2436 -8.2245 -6.0058 25 1 7.9836 -7.5108 -7.5362 26 1 8.5679 -8.7072 -5.5093 27 6 3.5177 -1.0193 -0.9785 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 -0.1073 3.7797 3.3691 34 1 -1.3298 2.2612 0.6916 35 1 -1.0278 4.0078 0.8547 36 1 -0.1879 3.0732 -0.4062 37 1 0.4940 -2.2646 -1.6776 38 1 1.3228 -2.5828 -0.1184 39 1 2.2610 -3.1234 -2.9301 40 1 2.6676 -3.9844 -1.4210 41 1 4.4197 -3.8197 -3.9575 42 1 4.8390 -4.6995 -2.4682 43 1 9.7060 -5.8374 -5.5929 44 1 3.7685 -1.1917 0.0682 45 1 4.0854 -0.1759 -1.3714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188959597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:18 Heat of formation + Delta-G solvation = 42.170889 kcal Electronic energy + Delta-G solvation = -26592.942682 eV Core-core repulsion = 22772.907186 eV Total energy + Delta-G solvation = -3820.035497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.10368 -41.16920 -39.37496 -37.19849 -35.84194 -34.58754 -32.97707 -31.76465 -30.86341 -29.45986 -28.78749 -27.88466 -27.66582 -25.36525 -24.09679 -23.29756 -21.74905 -21.15742 -20.68304 -19.58352 -18.20050 -18.06600 -17.83818 -17.46342 -16.88667 -16.70670 -16.41285 -16.05508 -15.90999 -15.66648 -15.52881 -14.99950 -14.61100 -14.41545 -14.36802 -14.31003 -13.85997 -13.77136 -13.48263 -13.31219 -13.20297 -13.14952 -12.91177 -12.64504 -12.56799 -12.53023 -12.35147 -11.97071 -11.88813 -11.70867 -11.29749 -11.15875 -11.08143 -10.99364 -10.34074 -10.27558 -9.72199 -9.44656 -8.68380 -8.34595 -6.13486 0.81070 1.23403 1.42026 1.44690 1.55077 1.56931 1.59495 1.85604 2.05604 2.27130 2.84986 2.99571 3.16711 3.27370 3.42587 3.63403 3.71931 3.85199 3.88084 3.95149 4.05219 4.15975 4.22603 4.31220 4.34167 4.41906 4.44390 4.45905 4.53744 4.64462 4.68749 4.70934 4.79986 4.86850 4.90549 4.95706 5.01617 5.14954 5.18313 5.30679 5.42054 5.82483 5.93153 5.99844 6.20121 6.37327 7.06394 7.09861 7.77343 8.74997 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.031290 B = 0.001922 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.652295 B =14562.092693 C =15134.182131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.539 5.539 3 C 0.141 3.859 4 C 0.185 3.815 5 N -0.335 5.335 6 N -0.356 5.356 7 C 0.164 3.836 8 N -0.470 5.470 9 C 0.058 3.942 10 C 0.086 3.914 11 H 0.081 0.919 12 C -0.107 4.107 13 C 0.091 3.909 14 N -0.616 5.616 15 C 0.545 3.455 16 O -0.568 6.568 17 C -0.117 4.117 18 S -0.155 6.155 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.111 3.889 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.261 0.739 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.064 0.936 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.379 15.569 8.554 36.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C 0.012 3.988 4 C -0.085 4.085 5 N -0.175 5.175 6 N -0.194 5.194 7 C -0.125 4.125 8 N -0.160 5.160 9 C -0.083 4.083 10 C -0.022 4.022 11 H 0.099 0.901 12 C -0.145 4.145 13 C -0.031 4.031 14 N -0.352 5.352 15 C 0.334 3.666 16 O -0.447 6.447 17 C -0.268 4.268 18 S 0.073 5.927 19 C -0.691 4.691 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.178 1.178 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.012 4.012 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.277 0.723 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.475 16.122 10.079 35.075 hybrid contribution -1.498 -0.858 -1.879 2.552 sum -30.973 15.264 8.200 35.491 Atomic orbital electron populations 1.22649 0.84878 1.04078 1.01246 1.61738 1.09849 1.11807 1.43056 1.20401 1.01923 0.88116 0.88396 1.24743 0.86528 0.98366 0.98850 1.74209 1.26797 1.17932 0.98584 1.74189 1.07025 1.13297 1.24914 1.27232 0.99307 1.02408 0.83533 1.46469 1.18341 1.38608 1.12623 1.22639 0.87333 1.05579 0.92707 1.22703 0.91897 0.95328 0.92308 0.90111 1.22717 0.97985 0.91611 1.02219 1.22382 0.82375 0.95873 1.02445 1.48342 1.09291 1.24731 1.52792 1.19819 0.81606 0.86487 0.78735 1.90694 1.38610 1.54291 1.61102 1.23283 1.02982 0.97923 1.02656 1.85647 1.08208 1.30827 1.68053 1.23222 0.99791 1.07699 1.38430 0.89754 1.26169 0.93894 1.02449 0.96813 1.70197 1.01358 1.40523 1.42774 0.84874 0.79093 0.76315 0.77456 1.17824 1.19871 1.20030 1.22262 0.96555 0.87047 0.95319 0.89615 0.92007 0.92583 0.88990 0.89571 0.72338 0.88061 0.86159 0.88170 0.86437 0.89363 0.89531 0.90442 0.87152 0.87602 0.91995 0.91812 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 8.37 127.69 1.07 1.19 16 2 N -0.54 -7.15 4.65 -892.98 -4.15 -11.30 16 3 C 0.14 2.01 5.23 85.55 0.45 2.46 16 4 C 0.18 3.36 6.65 137.98 0.92 4.27 16 5 N -0.34 -9.34 12.21 -50.16 -0.61 -9.95 16 6 N -0.36 -8.95 12.21 -59.99 -0.73 -9.68 16 7 C 0.16 2.13 12.74 180.11 2.30 4.43 16 8 N -0.47 -4.74 2.76 -542.07 -1.49 -6.23 16 9 C 0.06 -0.07 9.78 127.77 1.25 1.18 16 10 C 0.09 1.21 2.72 46.39 0.13 1.34 16 11 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 12 C -0.11 -1.18 5.09 31.78 0.16 -1.02 16 13 C 0.09 1.62 6.48 86.73 0.56 2.19 16 14 N -0.62 -17.42 3.32 -811.36 -2.70 -20.12 16 15 C 0.55 21.71 7.87 87.66 0.69 22.40 16 16 O -0.57 -28.28 16.12 -3.02 -0.05 -28.33 16 17 C -0.12 -4.83 5.35 71.24 0.38 -4.45 16 18 S -0.15 -8.79 20.57 -56.49 -1.16 -9.96 16 19 C -0.54 -31.30 9.50 67.95 0.65 -30.65 16 20 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 21 C 0.01 0.65 5.49 84.86 0.47 1.12 16 22 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 23 Si 1.00 43.75 29.55 68.60 2.03 45.77 16 24 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 C 0.11 2.73 5.63 86.94 0.49 3.22 16 28 H 0.09 0.46 6.99 -2.39 -0.02 0.45 16 29 H 0.06 0.45 4.98 -2.39 -0.01 0.43 16 30 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 31 H 0.09 1.73 6.95 -2.39 -0.02 1.71 16 32 H 0.09 0.66 7.19 -2.39 -0.02 0.64 16 33 H 0.26 0.55 8.06 -2.91 -0.02 0.52 16 34 H 0.10 -0.39 6.91 -2.39 -0.02 -0.40 16 35 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.10 -0.27 7.19 -2.39 -0.02 -0.29 16 37 H 0.12 0.54 8.10 -2.39 -0.02 0.52 16 38 H 0.09 1.06 8.09 -2.38 -0.02 1.04 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 42 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.69 7.71 -2.39 -0.02 1.67 16 Total: -1.00 -93.71 380.26 1.91 -91.80 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.00 Total: 6.71 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 9.50 Total: 7.66 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -9.40 Total: -113.66 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.05 Total: -28.33 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.96 kcal Total: -93.71 1.91 -91.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.969 kcal (2) G-P(sol) polarization free energy of solvation -93.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds