Wall clock time and date at job start Tue Mar 31 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99590 * 2 1 4 4 C 1.50701 * 109.47071 * 66.05077 * 3 2 1 5 5 N 1.30525 * 126.34192 * 269.68287 * 4 3 2 6 6 N 1.28596 * 109.67120 * 179.82440 * 5 4 3 7 7 C 1.30526 * 109.67309 * 0.45033 * 6 5 4 8 8 N 1.35490 * 126.35114 * 89.99495 * 4 3 2 9 9 C 1.46501 * 126.97700 * 0.02562 * 8 4 3 10 10 C 1.46902 * 111.00190 * 236.04824 * 2 1 3 11 11 H 1.08998 * 110.88407 * 65.02491 * 10 2 1 12 12 C 1.55156 * 111.03681 * 188.92837 * 10 2 1 13 13 C 1.54334 * 103.02115 * 153.39567 * 12 10 2 14 14 N 1.47029 * 107.26381 * 338.14454 * 13 12 10 15 15 C 1.34768 * 125.64657 * 178.85180 * 14 13 12 16 16 O 1.21288 * 120.00161 * 179.68571 * 15 14 13 17 17 C 1.50704 * 120.00415 * 359.68531 * 15 14 13 18 18 S 1.80992 * 109.47384 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99931 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00056 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00047 * 179.97438 * 19 18 17 22 22 N 1.31637 * 119.99939 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00051 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47056 * 90.00617 * 23 21 19 25 25 H 1.48503 * 109.47274 * 210.00156 * 23 21 19 26 26 H 1.48491 * 109.47447 * 330.00359 * 23 21 19 27 27 C 1.47419 * 108.70030 * 358.58208 * 14 13 12 28 28 H 1.08998 * 109.46804 * 185.80819 * 1 2 3 29 29 H 1.08997 * 109.47309 * 305.80554 * 1 2 3 30 30 H 1.09004 * 109.47024 * 65.81226 * 1 2 3 31 31 H 1.09008 * 109.47034 * 186.04376 * 3 2 1 32 32 H 1.08993 * 109.47548 * 306.04726 * 3 2 1 33 33 H 1.07994 * 126.34528 * 179.73035 * 7 6 5 34 34 H 1.09000 * 109.47392 * 89.99920 * 9 8 4 35 35 H 1.09000 * 109.46851 * 209.99629 * 9 8 4 36 36 H 1.08991 * 109.47169 * 329.99907 * 9 8 4 37 37 H 1.09001 * 110.72082 * 271.95358 * 12 10 2 38 38 H 1.09000 * 110.72031 * 35.04868 * 12 10 2 39 39 H 1.08996 * 109.99480 * 218.66627 * 13 12 10 40 40 H 1.09002 * 109.77850 * 97.49367 * 13 12 10 41 41 H 1.09009 * 109.46752 * 59.99951 * 17 15 14 42 42 H 1.08998 * 109.47349 * 300.00827 * 17 15 14 43 43 H 0.96991 * 120.00082 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36481 * 143.19831 * 27 14 13 45 45 H 1.09000 * 110.36751 * 265.51704 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 7 0.5585 2.7430 1.5364 6 7 0.5775 3.1697 2.7494 7 6 1.6734 2.7735 3.3375 8 7 2.3769 2.0497 2.4335 9 6 3.6745 1.4021 2.6409 10 6 1.9955 -0.7659 -1.1376 11 1 1.7333 -0.2888 -2.0819 12 6 3.5307 -0.9564 -1.0181 13 6 3.7818 -2.2594 -1.8062 14 7 2.5099 -2.9958 -1.8485 15 6 2.3061 -4.1765 -2.4654 16 8 1.2116 -4.6980 -2.4306 17 6 3.4381 -4.8489 -3.1987 18 16 2.8530 -6.4044 -3.9156 19 6 4.3351 -6.9616 -4.6886 20 1 5.2351 -6.3685 -4.6214 21 6 4.3462 -8.1634 -5.3831 22 7 3.2493 -8.8865 -5.4646 23 14 5.9172 -8.7537 -6.2032 24 1 6.6924 -9.5850 -5.2474 25 1 5.5765 -9.5637 -7.4003 26 1 6.7317 -7.5820 -6.6139 27 6 1.4963 -2.2318 -1.0987 28 1 -0.3633 -1.0224 0.1040 29 1 -0.3634 0.6012 0.8334 30 1 -0.3633 0.4211 -0.9375 31 1 3.0797 1.3445 -0.1082 32 1 1.5610 1.9274 -0.8308 33 1 1.9652 2.9835 4.3558 34 1 4.4730 2.0964 2.3795 35 1 3.7728 1.1125 3.6871 36 1 3.7430 0.5156 2.0105 37 1 4.0598 -0.1194 -1.4737 38 1 3.8245 -1.0749 0.0248 39 1 4.5406 -2.8588 -1.3033 40 1 4.1060 -2.0211 -2.8192 41 1 4.2518 -5.0526 -2.5025 42 1 3.7955 -4.1945 -3.9938 43 1 3.2569 -9.7261 -5.9502 44 1 0.5236 -2.3143 -1.5838 45 1 1.4390 -2.5859 -0.0695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:22 Heat of formation + Delta-G solvation = 66.291190 kcal Electronic energy + Delta-G solvation = -26582.043924 eV Core-core repulsion = 22763.054362 eV Total energy + Delta-G solvation = -3818.989562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.49990 -40.11606 -38.27730 -36.14087 -35.41334 -32.45067 -32.03700 -30.97870 -29.81734 -28.35785 -27.94363 -27.63068 -25.53669 -24.68182 -22.93770 -22.74303 -21.23605 -20.54569 -19.37622 -17.79671 -17.54868 -17.22869 -16.66899 -16.62912 -15.79199 -15.53710 -15.16679 -15.03057 -14.82695 -14.70356 -14.24281 -13.91398 -13.85143 -13.72408 -13.58899 -13.07302 -13.02015 -12.67052 -12.59481 -12.46886 -12.32452 -11.89955 -11.83882 -11.49822 -11.28059 -11.25142 -11.08277 -11.04220 -10.78761 -10.72344 -10.59539 -9.84310 -9.68409 -9.46395 -9.08727 -8.93104 -8.56467 -8.25879 -6.52752 -6.23672 -3.94631 1.34354 2.05072 2.45165 2.81243 3.01645 3.20310 3.22079 3.27964 3.43149 3.63610 3.86742 4.02955 4.09777 4.18300 4.19452 4.31662 4.42752 4.51753 4.67911 4.75634 4.85203 4.94895 5.03956 5.06547 5.09450 5.11421 5.18506 5.27127 5.36556 5.45000 5.47463 5.56770 5.65355 5.67860 5.71318 5.72505 5.80368 5.89375 6.10046 6.29875 6.37251 6.40916 6.57149 7.57035 7.60691 8.32953 8.35303 8.50845 9.21429 10.83754 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.032120 B = 0.001899 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.520848 B =14743.263702 C =15277.833042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.528 5.528 3 C 0.138 3.862 4 C 0.187 3.813 5 N -0.290 5.290 6 N -0.298 5.298 7 C 0.148 3.852 8 N -0.467 5.467 9 C 0.070 3.930 10 C 0.068 3.932 11 H 0.066 0.934 12 C -0.124 4.124 13 C 0.104 3.896 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.514 6.514 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.120 3.880 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.078 0.922 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 24.304 16.146 29.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.254 5.254 3 C 0.008 3.992 4 C -0.081 4.081 5 N -0.132 5.132 6 N -0.137 5.137 7 C -0.139 4.139 8 N -0.157 5.157 9 C -0.072 4.072 10 C -0.041 4.041 11 H 0.084 0.916 12 C -0.163 4.163 13 C -0.020 4.020 14 N -0.365 5.365 15 C 0.338 3.662 16 O -0.388 6.388 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.004 4.004 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.234 0.766 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.620 23.704 16.299 28.813 hybrid contribution 3.409 0.031 -0.846 3.513 sum 5.029 23.735 15.452 28.765 Atomic orbital electron populations 1.22519 0.85661 1.03067 1.01760 1.61970 1.09455 1.11361 1.42596 1.20351 1.00996 0.88433 0.89414 1.24580 0.90936 1.01693 0.90929 1.74280 1.17550 1.12439 1.08910 1.74267 1.17537 1.20923 1.01011 1.26453 0.91307 0.97669 0.98506 1.46132 1.19022 1.39607 1.10959 1.22175 0.81097 0.99055 1.04920 1.22839 0.95196 0.94028 0.92021 0.91603 1.22738 0.94717 0.97171 1.01640 1.21965 0.87099 0.92186 1.00703 1.48419 1.11511 1.21612 1.54919 1.20040 0.89837 0.78631 0.77716 1.90720 1.25805 1.62638 1.59593 1.23501 0.99414 1.04522 1.02219 1.85428 1.17152 1.14665 1.66156 1.22850 0.97016 1.09412 1.39066 0.90929 1.25000 0.97325 0.95540 0.95751 1.70017 1.26861 1.13413 1.39924 0.86162 0.81793 0.78730 0.78774 1.20267 1.20736 1.19704 1.22044 0.92781 0.88366 0.97186 0.90637 0.90461 0.94598 0.88628 0.90751 0.76568 0.89962 0.88865 0.88343 0.90083 0.89648 0.90944 0.91117 0.89281 0.89286 0.92157 0.90372 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.14 60.06 0.55 0.70 16 2 N -0.53 -3.99 4.65 -233.75 -1.09 -5.08 16 3 C 0.14 0.89 5.03 -4.97 -0.03 0.86 16 4 C 0.19 1.58 6.65 -154.98 -1.03 0.55 16 5 N -0.29 -3.40 11.36 32.80 0.37 -3.02 16 6 N -0.30 -3.38 12.21 29.69 0.36 -3.02 16 7 C 0.15 1.05 12.74 -89.94 -1.15 -0.10 16 8 N -0.47 -2.88 3.15 -122.69 -0.39 -3.26 16 9 C 0.07 0.14 10.89 59.85 0.65 0.79 16 10 C 0.07 0.54 2.71 -65.57 -0.18 0.36 16 11 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 12 C -0.12 -0.76 5.48 -24.89 -0.14 -0.90 16 13 C 0.10 0.97 6.49 -3.05 -0.02 0.95 16 14 N -0.63 -8.58 3.33 -170.52 -0.57 -9.15 16 15 C 0.55 10.40 7.87 -10.99 -0.09 10.31 16 16 O -0.51 -11.85 16.12 5.55 0.09 -11.76 16 17 C -0.15 -2.93 5.35 36.01 0.19 -2.74 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 23 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 C 0.12 1.38 5.21 -2.54 -0.01 1.36 16 28 H 0.07 0.68 7.15 -51.93 -0.37 0.31 16 29 H 0.08 0.79 6.47 -51.93 -0.34 0.46 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.39 6.60 -51.92 -0.34 0.04 16 32 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 36 H 0.10 0.20 7.81 -51.93 -0.41 -0.21 16 37 H 0.08 0.33 7.89 -51.93 -0.41 -0.08 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -38.17 385.63 -9.84 -48.01 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.89 Total: -4.90 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.04 Total: -0.66 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.57 Total: -48.79 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.17 -9.84 -48.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.305 kcal (2) G-P(sol) polarization free energy of solvation -38.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds