Wall clock time and date at job start Tue Mar 31 2020 22:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99590 * 2 1 4 4 C 1.50701 * 109.47071 * 66.05077 * 3 2 1 5 5 N 1.30525 * 126.34192 * 269.68287 * 4 3 2 6 6 N 1.28596 * 109.67120 * 179.82440 * 5 4 3 7 7 C 1.30526 * 109.67309 * 0.45033 * 6 5 4 8 8 N 1.35490 * 126.35114 * 89.99495 * 4 3 2 9 9 C 1.46501 * 126.97700 * 0.02562 * 8 4 3 10 10 C 1.46902 * 111.00190 * 236.04824 * 2 1 3 11 11 H 1.08998 * 110.88407 * 65.02491 * 10 2 1 12 12 C 1.55156 * 111.03681 * 188.92837 * 10 2 1 13 13 C 1.54334 * 103.02115 * 153.39567 * 12 10 2 14 14 N 1.47029 * 107.26381 * 338.14454 * 13 12 10 15 15 C 1.34768 * 125.64657 * 178.85180 * 14 13 12 16 16 O 1.21288 * 120.00161 * 179.68571 * 15 14 13 17 17 C 1.50704 * 120.00415 * 359.68531 * 15 14 13 18 18 S 1.80992 * 109.47384 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99931 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00056 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00047 * 179.97438 * 19 18 17 22 22 N 1.31637 * 119.99939 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00051 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47056 * 90.00617 * 23 21 19 25 25 H 1.48503 * 109.47274 * 210.00156 * 23 21 19 26 26 H 1.48491 * 109.47447 * 330.00359 * 23 21 19 27 27 C 1.47419 * 108.70030 * 358.58208 * 14 13 12 28 28 H 1.08998 * 109.46804 * 185.80819 * 1 2 3 29 29 H 1.08997 * 109.47309 * 305.80554 * 1 2 3 30 30 H 1.09004 * 109.47024 * 65.81226 * 1 2 3 31 31 H 1.09008 * 109.47034 * 186.04376 * 3 2 1 32 32 H 1.08993 * 109.47548 * 306.04726 * 3 2 1 33 33 H 1.07994 * 126.34528 * 179.73035 * 7 6 5 34 34 H 1.09000 * 109.47392 * 89.99920 * 9 8 4 35 35 H 1.09000 * 109.46851 * 209.99629 * 9 8 4 36 36 H 1.08991 * 109.47169 * 329.99907 * 9 8 4 37 37 H 1.09001 * 110.72082 * 271.95358 * 12 10 2 38 38 H 1.09000 * 110.72031 * 35.04868 * 12 10 2 39 39 H 1.08996 * 109.99480 * 218.66627 * 13 12 10 40 40 H 1.09002 * 109.77850 * 97.49367 * 13 12 10 41 41 H 1.09009 * 109.46752 * 59.99951 * 17 15 14 42 42 H 1.08998 * 109.47349 * 300.00827 * 17 15 14 43 43 H 0.96991 * 120.00082 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36481 * 143.19831 * 27 14 13 45 45 H 1.09000 * 110.36751 * 265.51704 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 7 0.5585 2.7430 1.5364 6 7 0.5775 3.1697 2.7494 7 6 1.6734 2.7735 3.3375 8 7 2.3769 2.0497 2.4335 9 6 3.6745 1.4021 2.6409 10 6 1.9955 -0.7659 -1.1376 11 1 1.7333 -0.2888 -2.0819 12 6 3.5307 -0.9564 -1.0181 13 6 3.7818 -2.2594 -1.8062 14 7 2.5099 -2.9958 -1.8485 15 6 2.3061 -4.1765 -2.4654 16 8 1.2116 -4.6980 -2.4306 17 6 3.4381 -4.8489 -3.1987 18 16 2.8530 -6.4044 -3.9156 19 6 4.3351 -6.9616 -4.6886 20 1 5.2351 -6.3685 -4.6214 21 6 4.3462 -8.1634 -5.3831 22 7 3.2493 -8.8865 -5.4646 23 14 5.9172 -8.7537 -6.2032 24 1 6.6924 -9.5850 -5.2474 25 1 5.5765 -9.5637 -7.4003 26 1 6.7317 -7.5820 -6.6139 27 6 1.4963 -2.2318 -1.0987 28 1 -0.3633 -1.0224 0.1040 29 1 -0.3634 0.6012 0.8334 30 1 -0.3633 0.4211 -0.9375 31 1 3.0797 1.3445 -0.1082 32 1 1.5610 1.9274 -0.8308 33 1 1.9652 2.9835 4.3558 34 1 4.4730 2.0964 2.3795 35 1 3.7728 1.1125 3.6871 36 1 3.7430 0.5156 2.0105 37 1 4.0598 -0.1194 -1.4737 38 1 3.8245 -1.0749 0.0248 39 1 4.5406 -2.8588 -1.3033 40 1 4.1060 -2.0211 -2.8192 41 1 4.2518 -5.0526 -2.5025 42 1 3.7955 -4.1945 -3.9938 43 1 3.2569 -9.7261 -5.9502 44 1 0.5236 -2.3143 -1.5838 45 1 1.4390 -2.5859 -0.0695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188959599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:21 Heat of formation + Delta-G solvation = 39.508937 kcal Electronic energy + Delta-G solvation = -26583.205289 eV Core-core repulsion = 22763.054362 eV Total energy + Delta-G solvation = -3820.150927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.05126 -41.17399 -39.35975 -37.08695 -35.87420 -34.58159 -32.90385 -31.82777 -30.94305 -29.19429 -28.53944 -28.17886 -27.65506 -25.51743 -23.78681 -23.27648 -21.83600 -21.18302 -20.68189 -19.58809 -18.19777 -17.96112 -17.84471 -17.27861 -16.87953 -16.71991 -16.39457 -16.07569 -15.94197 -15.60469 -15.51421 -15.04617 -14.57059 -14.33346 -14.21448 -14.14720 -13.98775 -13.78474 -13.45120 -13.36839 -13.15989 -13.15010 -12.93127 -12.88423 -12.60412 -12.52687 -12.21060 -11.98029 -11.82703 -11.72666 -11.29747 -11.13743 -11.01532 -10.99705 -10.31859 -10.27492 -9.72584 -9.54845 -8.68086 -8.34173 -6.13081 0.83439 1.23785 1.43432 1.45165 1.55026 1.56385 1.67833 1.84454 2.06007 2.27699 2.84526 3.00040 3.18516 3.34053 3.42279 3.62309 3.73204 3.88349 3.94926 4.02819 4.09204 4.20023 4.25812 4.34768 4.39709 4.45377 4.47764 4.49471 4.52073 4.64567 4.69145 4.79624 4.80438 4.85889 4.94895 4.98835 5.03901 5.18041 5.23680 5.31836 5.42182 5.74567 5.86191 6.03302 6.20221 6.37311 7.06836 7.09936 7.76517 8.75092 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.032120 B = 0.001899 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.520848 B =14743.263702 C =15277.833042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.524 5.524 3 C 0.141 3.859 4 C 0.183 3.817 5 N -0.338 5.338 6 N -0.354 5.354 7 C 0.160 3.840 8 N -0.463 5.463 9 C 0.062 3.938 10 C 0.080 3.920 11 H 0.069 0.931 12 C -0.109 4.109 13 C 0.090 3.910 14 N -0.616 5.616 15 C 0.545 3.455 16 O -0.570 6.570 17 C -0.117 4.117 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.256 1.256 27 C 0.116 3.884 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.130 0.870 32 H 0.071 0.929 33 H 0.256 0.744 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.055 0.945 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.669 26.149 16.889 32.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.249 5.249 3 C 0.012 3.988 4 C -0.087 4.087 5 N -0.179 5.179 6 N -0.193 5.193 7 C -0.129 4.129 8 N -0.152 5.152 9 C -0.078 4.078 10 C -0.029 4.029 11 H 0.087 0.913 12 C -0.147 4.147 13 C -0.032 4.032 14 N -0.352 5.352 15 C 0.334 3.666 16 O -0.449 6.449 17 C -0.268 4.268 18 S 0.071 5.929 19 C -0.691 4.691 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.180 1.180 27 C -0.007 4.007 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.272 0.728 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.829 25.613 17.073 31.328 hybrid contribution 2.115 -0.427 -0.942 2.355 sum 7.944 25.186 16.131 30.946 Atomic orbital electron populations 1.22386 0.86926 1.02104 1.01035 1.61931 1.08362 1.12354 1.42280 1.20473 1.02788 0.87103 0.88429 1.24835 0.90589 1.01165 0.92109 1.74160 1.19723 1.14328 1.09693 1.74152 1.20209 1.23323 1.01581 1.27171 0.90059 0.96008 0.99676 1.46378 1.19936 1.39043 1.09863 1.22536 0.79425 0.99471 1.06417 1.22694 0.96633 0.91289 0.92284 0.91331 1.22779 0.92840 0.96454 1.02593 1.22408 0.85037 0.93376 1.02335 1.48335 1.14021 1.19987 1.52816 1.19823 0.88632 0.80006 0.78168 1.90698 1.27524 1.64663 1.61972 1.23282 1.00001 1.00673 1.02854 1.85658 1.19553 1.20143 1.67524 1.23188 0.97037 1.09900 1.39007 0.89688 1.26165 1.01239 0.95604 0.96305 1.70192 1.29623 1.13990 1.41053 0.84930 0.76867 0.78534 0.77501 1.19271 1.20469 1.17967 1.22148 0.91596 0.90758 0.96242 0.91497 0.91986 0.94729 0.85191 0.91064 0.72788 0.87894 0.87017 0.87837 0.86429 0.87914 0.89748 0.89998 0.87273 0.87323 0.92026 0.92669 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.14 127.69 1.17 1.59 16 2 N -0.52 -6.82 4.65 -893.45 -4.16 -10.98 16 3 C 0.14 1.42 5.03 85.56 0.43 1.85 16 4 C 0.18 2.80 6.65 137.98 0.92 3.72 16 5 N -0.34 -7.95 11.36 -50.15 -0.57 -8.52 16 6 N -0.35 -8.01 12.21 -59.99 -0.73 -8.75 16 7 C 0.16 1.96 12.74 180.11 2.30 4.26 16 8 N -0.46 -4.46 3.15 -542.08 -1.71 -6.16 16 9 C 0.06 -0.02 10.89 127.77 1.39 1.37 16 10 C 0.08 1.05 2.71 46.30 0.13 1.18 16 11 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 12 C -0.11 -0.79 5.48 31.79 0.17 -0.62 16 13 C 0.09 1.34 6.49 86.73 0.56 1.90 16 14 N -0.62 -15.99 3.33 -811.78 -2.70 -18.69 16 15 C 0.55 20.70 7.87 87.66 0.69 21.39 16 16 O -0.57 -27.44 16.12 -3.06 -0.05 -27.49 16 17 C -0.12 -4.62 5.35 71.24 0.38 -4.24 16 18 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 19 C -0.54 -30.67 9.50 67.95 0.65 -30.02 16 20 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.65 5.49 84.86 0.47 1.11 16 22 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 23 Si 1.00 42.93 29.55 68.60 2.03 44.95 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 27 C 0.12 2.58 5.21 86.85 0.45 3.03 16 28 H 0.07 1.27 7.15 -2.39 -0.02 1.25 16 29 H 0.06 1.32 6.47 -2.39 -0.02 1.30 16 30 H 0.03 0.60 8.14 -2.38 -0.02 0.59 16 31 H 0.13 0.39 6.60 -2.38 -0.02 0.37 16 32 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.26 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.10 -0.09 7.81 -2.39 -0.02 -0.11 16 37 H 0.12 0.14 7.89 -2.39 -0.02 0.13 16 38 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 42 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 44 H 0.05 1.49 7.95 -2.39 -0.02 1.47 16 45 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -89.98 385.63 1.92 -88.06 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 0.99 Total: 6.53 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 9.70 Total: 6.52 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -9.58 Total: -108.74 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -89.98 1.92 -88.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.568 kcal (2) G-P(sol) polarization free energy of solvation -89.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds