Wall clock time and date at job start Tue Mar 31 2020 22:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46907 * 110.99925 * 2 1 4 4 C 1.50696 * 109.46881 * 293.95683 * 3 2 1 5 5 O 1.21296 * 120.00535 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99936 * 180.02562 * 4 3 2 7 7 C 1.37101 * 120.00030 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99882 * 0.02562 * 7 6 4 9 9 C 1.38952 * 119.99725 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00207 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99599 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47028 * 90.00640 * 11 9 7 13 13 H 1.48501 * 109.47070 * 210.00170 * 11 9 7 14 14 H 1.48497 * 109.47372 * 330.00574 * 11 9 7 15 15 C 1.46902 * 111.00310 * 123.95288 * 2 1 3 16 16 H 1.09000 * 110.88854 * 292.16440 * 15 2 1 17 17 C 1.55158 * 111.00429 * 56.04734 * 15 2 1 18 18 C 1.54318 * 102.94153 * 153.57466 * 17 15 2 19 19 N 1.47016 * 107.27364 * 337.80723 * 18 17 15 20 20 C 1.34781 * 125.64922 * 178.90345 * 19 18 17 21 21 O 1.21585 * 120.00084 * 180.02562 * 20 19 18 22 22 C 1.47618 * 120.00000 * 0.02562 * 20 19 18 23 23 N 1.31871 * 126.45610 * 359.96047 * 22 20 19 24 24 N 1.28468 * 110.15016 * 180.02562 * 23 22 20 25 25 H 0.97010 * 124.93008 * 180.02562 * 24 23 22 26 26 C 1.35732 * 110.13782 * 359.72786 * 24 23 22 27 27 C 1.35544 * 107.10989 * 0.43523 * 26 24 23 28 28 F 1.35104 * 127.23865 * 179.84611 * 27 26 24 29 29 C 1.47425 * 108.70275 * 359.16943 * 19 18 17 30 30 H 1.09001 * 109.46964 * 296.04359 * 1 2 3 31 31 H 1.08993 * 109.47697 * 56.04936 * 1 2 3 32 32 H 1.09001 * 109.46899 * 176.04789 * 1 2 3 33 33 H 1.09001 * 109.46928 * 53.95567 * 3 2 1 34 34 H 1.09002 * 109.47161 * 173.95805 * 3 2 1 35 35 H 0.97001 * 120.00077 * 359.97438 * 6 4 3 36 36 H 0.96998 * 119.99903 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.71734 * 35.20971 * 17 15 2 38 38 H 1.08996 * 110.87182 * 272.01442 * 17 15 2 39 39 H 1.09004 * 109.88300 * 218.38953 * 18 17 15 40 40 H 1.08999 * 109.88077 * 97.22704 * 18 17 15 41 41 H 1.08000 * 126.44257 * 180.29953 * 26 24 23 42 42 H 1.08999 * 110.36534 * 142.73820 * 29 19 18 43 43 H 1.09000 * 110.36340 * 265.05898 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2984 5 8 1.0052 1.4453 -2.1411 6 7 2.0187 3.3199 -1.5237 7 6 1.6929 3.9344 -2.7052 8 1 1.1299 3.3988 -3.4551 9 6 2.0862 5.2468 -2.9372 10 7 2.7709 5.8987 -2.0244 11 14 1.6429 6.0838 -4.5472 12 1 0.3305 6.7642 -4.4064 13 1 2.6854 7.0850 -4.8881 14 1 1.5604 5.0678 -5.6271 15 6 1.9955 -0.7660 1.1376 16 1 1.7761 -0.2632 2.0795 17 6 1.4395 -2.2145 1.1377 18 6 2.5364 -3.0056 1.8811 19 7 3.7815 -2.2312 1.7741 20 6 4.9687 -2.5746 2.3119 21 8 5.9363 -1.8543 2.1593 22 6 5.0943 -3.8251 3.0862 23 7 4.1340 -4.6953 3.3303 24 7 4.5880 -5.6694 4.0343 25 1 4.0643 -6.4285 4.3353 26 6 5.9082 -5.4855 4.2902 27 6 6.2683 -4.3160 3.7071 28 9 7.4915 -3.7424 3.7124 29 6 3.5149 -1.0137 0.9867 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 1.5610 1.9274 0.8309 34 1 3.0797 1.3445 0.1082 35 1 2.5241 3.8011 -0.8500 36 1 3.0457 6.8146 -2.1866 37 1 1.3222 -2.5826 0.1185 38 1 0.4936 -2.2674 1.6766 39 1 2.6670 -3.9834 1.4174 40 1 2.2622 -3.1238 2.9294 41 1 6.5504 -6.1456 4.8543 42 1 4.0787 -0.1715 1.3878 43 1 3.7682 -1.1765 -0.0609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192205827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:11 Heat of formation + Delta-G solvation = -11.357959 kcal Electronic energy + Delta-G solvation = -28963.474674 eV Core-core repulsion = 24574.904816 eV Total energy + Delta-G solvation = -4388.569858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.94925 -43.13344 -40.10834 -38.65281 -37.58722 -35.44729 -33.79832 -32.47459 -31.25265 -31.12838 -30.71116 -29.00359 -27.81104 -25.37388 -24.80334 -23.36169 -22.64384 -22.19692 -20.24598 -19.91506 -19.13560 -18.81835 -17.81663 -17.43851 -16.95401 -16.56254 -16.29289 -15.89375 -15.53584 -15.41518 -15.05423 -14.76673 -14.59594 -14.52700 -14.18805 -13.80997 -13.63388 -13.33772 -13.13010 -12.99821 -12.81755 -12.54554 -12.07621 -11.82761 -11.50115 -11.47838 -11.27148 -11.19741 -11.01385 -10.94102 -10.73274 -10.36046 -10.31646 -10.18234 -10.06751 -9.44244 -9.42967 -8.75506 -8.44260 -7.95856 -7.86267 -6.37923 -3.78714 1.00573 1.37041 2.12744 2.65856 3.04438 3.20528 3.29211 3.35160 3.64672 3.93205 3.98845 4.10060 4.24852 4.31451 4.34721 4.57956 4.64340 4.84375 4.96313 5.12031 5.21998 5.24512 5.32143 5.53212 5.63293 5.69198 5.74052 5.81064 5.86731 5.94022 5.95182 5.96449 6.08727 6.14627 6.28636 6.31977 6.54769 7.08606 7.22196 7.29957 7.38077 7.58809 7.94423 8.09926 8.65427 9.21701 9.58300 10.09891 10.79812 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.002136 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.013425 B =13103.702804 C =14139.930530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.507 5.507 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.930 3.070 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.069 3.931 16 H 0.056 0.944 17 C -0.125 4.125 18 C 0.112 3.888 19 N -0.603 5.603 20 C 0.612 3.388 21 O -0.520 6.520 22 C -0.022 4.022 23 N -0.229 5.229 24 N -0.371 5.371 25 H 0.457 0.543 26 C -0.038 4.038 27 C 0.039 3.961 28 F -0.098 7.098 29 C 0.114 3.886 30 H 0.014 0.986 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.199 0.801 42 H 0.081 0.919 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -24.412 17.085 29.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.041 4.041 16 H 0.074 0.926 17 C -0.163 4.163 18 C -0.011 4.011 19 N -0.336 5.336 20 C 0.398 3.602 21 O -0.394 6.394 22 C -0.184 4.184 23 N -0.066 5.066 24 N -0.087 5.087 25 H 0.303 0.697 26 C -0.183 4.183 27 C 0.009 3.991 28 F -0.077 7.077 29 C -0.008 4.008 30 H 0.033 0.967 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.216 0.784 42 H 0.100 0.900 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.851 -24.605 15.803 29.255 hybrid contribution 0.704 0.936 0.863 1.455 sum 1.555 -23.669 16.665 28.989 Atomic orbital electron populations 1.22536 0.86180 1.02150 1.01548 1.61588 1.08890 1.12878 1.39731 1.21931 1.00887 0.88761 0.97351 1.19676 0.85483 0.82929 0.88871 1.90482 1.44021 1.64630 1.47082 1.41871 1.49343 1.10789 1.18047 1.19688 1.32912 0.95420 0.94746 0.87902 1.25266 0.96834 0.96692 0.99215 1.69613 1.37964 1.12224 1.34451 0.85861 0.77960 0.78903 0.81574 1.20483 1.20948 1.19411 1.22736 0.93862 0.94429 0.93062 0.92641 1.22759 0.97444 0.93961 1.02158 1.22088 0.82941 0.95151 1.00962 1.48145 1.08992 1.24029 1.52481 1.16286 0.82145 0.83085 0.78675 1.90887 1.36868 1.51663 1.60004 1.22106 0.90871 0.98600 1.06843 1.73772 1.25027 0.97468 1.10296 1.43089 1.07897 1.19275 1.38480 0.69713 1.22690 0.87610 1.00209 1.07744 1.17181 0.82436 0.94397 1.05102 1.91561 1.37645 1.83461 1.95032 1.22274 0.95164 0.86599 0.96758 0.96719 0.88385 0.91896 0.93293 0.89260 0.77466 0.91880 0.89078 0.90022 0.90707 0.90924 0.78418 0.90031 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.93 60.06 0.54 0.90 16 2 N -0.51 -8.15 4.40 -233.89 -1.03 -9.18 16 3 C 0.04 0.75 5.36 -4.97 -0.03 0.72 16 4 C 0.45 10.47 7.47 -10.99 -0.08 10.39 16 5 O -0.58 -15.36 13.91 5.54 0.08 -15.28 16 6 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 11 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.07 0.87 2.70 -65.68 -0.18 0.70 16 16 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 17 C -0.13 -1.25 5.10 -24.90 -0.13 -1.38 16 18 C 0.11 1.08 5.54 -3.07 -0.02 1.07 16 19 N -0.60 -7.71 3.33 -171.86 -0.57 -8.28 16 20 C 0.61 8.87 7.85 -12.43 -0.10 8.77 16 21 O -0.52 -9.42 16.93 5.29 0.09 -9.34 16 22 C -0.02 -0.26 6.98 -82.74 -0.58 -0.83 16 23 N -0.23 -1.90 9.74 33.43 0.33 -1.57 16 24 N -0.37 -1.63 6.86 30.64 0.21 -1.42 16 25 H 0.46 -0.01 8.96 -190.43 -1.71 -1.72 16 26 C -0.04 -0.19 12.06 -16.79 -0.20 -0.40 16 27 C 0.04 0.40 8.03 -39.27 -0.32 0.08 16 28 F -0.10 -1.23 17.03 2.25 0.04 -1.19 16 29 C 0.11 1.57 5.60 -2.65 -0.01 1.56 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 32 H 0.06 0.81 6.99 -51.93 -0.36 0.45 16 33 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 34 H 0.09 1.50 6.96 -51.93 -0.36 1.13 16 35 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 40 H 0.07 0.63 7.65 -51.93 -0.40 0.24 16 41 H 0.20 0.20 8.06 -52.49 -0.42 -0.22 16 42 H 0.08 1.18 7.72 -51.93 -0.40 0.78 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -36.02 364.25 -7.79 -43.81 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.72 Total: 5.71 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: -1.34 Total: 13.57 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.40 Total: -59.00 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.02 -7.79 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192205827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.451 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds