Wall clock time and date at job start Tue Mar 31 2020 22:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46907 * 110.99925 * 2 1 4 4 C 1.50696 * 109.46881 * 293.95683 * 3 2 1 5 5 O 1.21296 * 120.00535 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99936 * 180.02562 * 4 3 2 7 7 C 1.37101 * 120.00030 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99882 * 0.02562 * 7 6 4 9 9 C 1.38952 * 119.99725 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00207 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99599 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47028 * 90.00640 * 11 9 7 13 13 H 1.48501 * 109.47070 * 210.00170 * 11 9 7 14 14 H 1.48497 * 109.47372 * 330.00574 * 11 9 7 15 15 C 1.46902 * 111.00310 * 123.95288 * 2 1 3 16 16 H 1.09000 * 110.88854 * 292.16440 * 15 2 1 17 17 C 1.55158 * 111.00429 * 56.04734 * 15 2 1 18 18 C 1.54318 * 102.94153 * 153.57466 * 17 15 2 19 19 N 1.47016 * 107.27364 * 337.80723 * 18 17 15 20 20 C 1.34781 * 125.64922 * 178.90345 * 19 18 17 21 21 O 1.21585 * 120.00084 * 180.02562 * 20 19 18 22 22 C 1.47618 * 120.00000 * 0.02562 * 20 19 18 23 23 N 1.31871 * 126.45610 * 359.96047 * 22 20 19 24 24 N 1.28468 * 110.15016 * 180.02562 * 23 22 20 25 25 H 0.97010 * 124.93008 * 180.02562 * 24 23 22 26 26 C 1.35732 * 110.13782 * 359.72786 * 24 23 22 27 27 C 1.35544 * 107.10989 * 0.43523 * 26 24 23 28 28 F 1.35104 * 127.23865 * 179.84611 * 27 26 24 29 29 C 1.47425 * 108.70275 * 359.16943 * 19 18 17 30 30 H 1.09001 * 109.46964 * 296.04359 * 1 2 3 31 31 H 1.08993 * 109.47697 * 56.04936 * 1 2 3 32 32 H 1.09001 * 109.46899 * 176.04789 * 1 2 3 33 33 H 1.09001 * 109.46928 * 53.95567 * 3 2 1 34 34 H 1.09002 * 109.47161 * 173.95805 * 3 2 1 35 35 H 0.97001 * 120.00077 * 359.97438 * 6 4 3 36 36 H 0.96998 * 119.99903 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.71734 * 35.20971 * 17 15 2 38 38 H 1.08996 * 110.87182 * 272.01442 * 17 15 2 39 39 H 1.09004 * 109.88300 * 218.38953 * 18 17 15 40 40 H 1.08999 * 109.88077 * 97.22704 * 18 17 15 41 41 H 1.08000 * 126.44257 * 180.29953 * 26 24 23 42 42 H 1.08999 * 110.36534 * 142.73820 * 29 19 18 43 43 H 1.09000 * 110.36340 * 265.05898 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2984 5 8 1.0052 1.4453 -2.1411 6 7 2.0187 3.3199 -1.5237 7 6 1.6929 3.9344 -2.7052 8 1 1.1299 3.3988 -3.4551 9 6 2.0862 5.2468 -2.9372 10 7 2.7709 5.8987 -2.0244 11 14 1.6429 6.0838 -4.5472 12 1 0.3305 6.7642 -4.4064 13 1 2.6854 7.0850 -4.8881 14 1 1.5604 5.0678 -5.6271 15 6 1.9955 -0.7660 1.1376 16 1 1.7761 -0.2632 2.0795 17 6 1.4395 -2.2145 1.1377 18 6 2.5364 -3.0056 1.8811 19 7 3.7815 -2.2312 1.7741 20 6 4.9687 -2.5746 2.3119 21 8 5.9363 -1.8543 2.1593 22 6 5.0943 -3.8251 3.0862 23 7 4.1340 -4.6953 3.3303 24 7 4.5880 -5.6694 4.0343 25 1 4.0643 -6.4285 4.3353 26 6 5.9082 -5.4855 4.2902 27 6 6.2683 -4.3160 3.7071 28 9 7.4915 -3.7424 3.7124 29 6 3.5149 -1.0137 0.9867 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 1.5610 1.9274 0.8309 34 1 3.0797 1.3445 0.1082 35 1 2.5241 3.8011 -0.8500 36 1 3.0457 6.8146 -2.1866 37 1 1.3222 -2.5826 0.1185 38 1 0.4936 -2.2674 1.6766 39 1 2.6670 -3.9834 1.4174 40 1 2.2622 -3.1238 2.9294 41 1 6.5504 -6.1456 4.8543 42 1 4.0787 -0.1715 1.3878 43 1 3.7682 -1.1765 -0.0609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192205827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:10 Heat of formation + Delta-G solvation = -40.710077 kcal Electronic energy + Delta-G solvation = -28964.747477 eV Core-core repulsion = 24574.904816 eV Total energy + Delta-G solvation = -4389.842661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.72506 -43.73125 -41.18338 -40.26532 -38.95125 -36.77749 -35.77735 -33.29217 -33.20310 -31.91516 -31.53573 -30.01980 -29.30134 -26.77394 -26.21540 -24.58835 -23.52314 -22.84467 -21.39852 -20.95034 -20.63592 -19.84781 -19.51683 -18.40636 -17.93778 -17.55080 -17.38921 -16.96579 -16.57619 -16.56633 -16.26673 -16.10498 -16.01082 -15.63190 -15.45519 -15.33396 -15.03215 -14.60762 -14.29295 -14.00422 -13.87993 -13.61558 -13.56787 -13.37881 -13.07432 -12.79411 -12.57744 -12.46990 -12.37612 -12.12461 -12.04141 -11.87556 -11.85439 -11.45018 -11.41856 -10.68679 -10.27257 -10.08514 -9.99142 -9.75515 -9.24651 -8.45245 -5.93942 0.24880 0.78916 1.38350 1.41718 1.54503 1.55738 1.89356 2.06215 2.06664 2.29087 2.73011 2.95363 3.21410 3.30919 3.47907 3.53532 3.66200 3.81466 3.88833 4.05693 4.18204 4.30002 4.32239 4.40013 4.42475 4.50527 4.60351 4.62215 4.75293 4.82662 4.88774 4.97117 5.10663 5.17508 5.21083 5.29847 5.42331 5.85895 5.91902 6.05416 6.18974 6.31694 6.54507 6.61477 6.91719 7.14034 7.57600 8.12966 8.72328 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.002136 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.013425 B =13103.702804 C =14139.930530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.524 5.524 3 C 0.054 3.946 4 C 0.444 3.556 5 O -0.610 6.610 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.994 3.006 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.273 1.273 15 C 0.075 3.925 16 H 0.070 0.930 17 C -0.115 4.115 18 C 0.116 3.884 19 N -0.602 5.602 20 C 0.604 3.396 21 O -0.574 6.574 22 C -0.055 4.055 23 N -0.224 5.224 24 N -0.341 5.341 25 H 0.479 0.521 26 C 0.010 3.990 27 C -0.011 4.011 28 F -0.122 7.122 29 C 0.113 3.887 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.395 0.605 36 H 0.277 0.723 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.248 0.752 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 -27.011 19.062 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C -0.077 4.077 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.195 1.195 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.034 4.034 16 H 0.087 0.913 17 C -0.153 4.153 18 C -0.006 4.006 19 N -0.334 5.334 20 C 0.392 3.608 21 O -0.453 6.453 22 C -0.215 4.215 23 N -0.063 5.063 24 N -0.061 5.061 25 H 0.331 0.669 26 C -0.136 4.136 27 C -0.041 4.041 28 F -0.101 7.101 29 C -0.010 4.010 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.264 0.736 42 H 0.085 0.915 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.320 -27.248 17.809 32.553 hybrid contribution 1.019 1.571 0.314 1.899 sum 0.699 -25.677 18.123 31.436 Atomic orbital electron populations 1.22437 0.85577 1.03308 1.00557 1.61507 1.09553 1.11761 1.42038 1.21763 1.01648 0.89896 0.94383 1.20656 0.83728 0.82173 0.90297 1.90459 1.45073 1.65230 1.48859 1.41961 1.50065 1.11678 1.17674 1.19665 1.34287 0.96345 0.95648 0.90109 1.26072 0.96321 0.96724 1.02453 1.69683 1.38194 1.12637 1.35856 0.84911 0.78219 0.77757 0.77351 1.19478 1.19748 1.19729 1.22729 0.92787 0.95745 0.92166 0.91254 1.22777 0.98660 0.91465 1.02405 1.22247 0.81230 0.95014 1.02135 1.48232 1.09733 1.23831 1.51618 1.16806 0.81728 0.83801 0.78500 1.90836 1.38609 1.53648 1.62167 1.21731 0.92531 0.98592 1.08627 1.73682 1.24198 0.97724 1.10710 1.43300 1.08040 1.18638 1.36129 0.66875 1.23296 0.87603 0.98061 1.04633 1.17704 0.81726 0.96748 1.07941 1.91485 1.38933 1.84232 1.95451 1.22147 0.96145 0.86963 0.95734 0.94879 0.92531 0.89173 0.91253 0.88352 0.77186 0.91380 0.89716 0.87035 0.89672 0.89112 0.73556 0.91482 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 8.93 127.69 1.14 1.98 16 2 N -0.52 -16.52 4.40 -893.89 -3.93 -20.46 16 3 C 0.05 1.95 5.36 85.55 0.46 2.41 16 4 C 0.44 21.53 7.47 87.66 0.66 22.19 16 5 O -0.61 -33.63 13.91 -3.08 -0.04 -33.67 16 6 N -0.58 -30.41 5.29 -306.98 -1.62 -32.03 16 7 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 9 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 10 N -0.92 -51.24 13.05 21.66 0.28 -50.95 16 11 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.07 1.80 2.70 46.23 0.12 1.92 16 16 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 17 C -0.12 -1.99 5.10 31.78 0.16 -1.82 16 18 C 0.12 1.98 5.54 86.73 0.48 2.46 16 19 N -0.60 -15.36 3.33 -815.90 -2.72 -18.08 16 20 C 0.60 18.11 7.85 86.72 0.68 18.79 16 21 O -0.57 -22.35 16.93 -3.98 -0.07 -22.42 16 22 C -0.06 -1.24 6.98 42.44 0.30 -0.94 16 23 N -0.22 -3.12 9.74 -48.15 -0.47 -3.59 16 24 N -0.34 -1.57 6.86 -56.99 -0.39 -1.96 16 25 H 0.48 -2.51 8.96 -219.98 -1.97 -4.48 16 26 C 0.01 0.07 12.06 83.47 1.01 1.07 16 27 C -0.01 -0.22 8.03 22.47 0.18 -0.04 16 28 F -0.12 -3.17 17.03 44.97 0.77 -2.40 16 29 C 0.11 3.19 5.60 86.78 0.49 3.67 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 2.17 5.82 -2.39 -0.01 2.16 16 32 H 0.09 2.11 6.99 -2.39 -0.02 2.10 16 33 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 34 H 0.10 3.36 6.96 -2.39 -0.02 3.34 16 35 H 0.39 20.02 7.90 -92.71 -0.73 19.29 16 36 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 38 H 0.11 1.32 8.10 -2.39 -0.02 1.31 16 39 H 0.09 1.32 7.77 -2.38 -0.02 1.30 16 40 H 0.09 1.27 7.65 -2.39 -0.02 1.26 16 41 H 0.25 -0.94 8.06 -2.91 -0.02 -0.96 16 42 H 0.07 2.05 7.72 -2.39 -0.02 2.03 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -84.53 364.25 -0.83 -85.36 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -1.62 Total: 21.27 kcal Atomic # 6 Polarization: 26.04 SS G_CDS: 6.95 Total: 32.99 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -8.85 Total: -127.07 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -0.11 Total: -56.09 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.77 Total: -2.40 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -84.53 -0.83 -85.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192205827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.650 kcal (2) G-P(sol) polarization free energy of solvation -84.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds