Wall clock time and date at job start Tue Mar 31 2020 22:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35309 * 125.86961 * 2 1 4 4 C 1.35348 * 106.17682 * 180.18121 * 3 2 1 5 5 C 1.50703 * 126.75397 * 179.84897 * 4 3 2 6 6 N 1.46899 * 109.47107 * 94.70843 * 5 4 3 7 7 C 1.46194 * 111.00246 * 197.08058 * 6 5 4 8 8 C 1.51327 * 109.10612 * 144.77479 * 7 6 5 9 9 C 1.53800 * 109.62634 * 92.39908 * 8 7 6 10 10 N 1.47617 * 111.30246 * 319.98199 * 9 8 7 11 11 C 1.34774 * 118.75065 * 138.31718 * 10 9 8 12 12 O 1.21273 * 120.00438 * 179.97438 * 11 10 9 13 13 C 1.50704 * 119.99724 * 359.97438 * 11 10 9 14 14 S 1.81003 * 109.47038 * 179.97438 * 13 11 10 15 15 C 1.76204 * 99.99593 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00462 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99396 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00541 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46675 * 90.00003 * 19 17 15 21 21 H 1.48490 * 109.47199 * 209.99897 * 19 17 15 22 22 H 1.48497 * 109.47048 * 330.00113 * 19 17 15 23 23 C 1.44882 * 122.50257 * 318.30140 * 10 9 8 24 24 C 1.41445 * 110.99652 * 66.04722 * 6 5 4 25 25 N 1.33770 * 106.49568 * 359.58529 * 4 3 2 26 26 N 1.28640 * 108.88442 * 0.26547 * 25 4 3 27 27 H 1.08996 * 109.47898 * 270.30332 * 1 2 3 28 28 H 1.09008 * 109.46675 * 30.30479 * 1 2 3 29 29 H 1.08999 * 109.46858 * 150.29712 * 1 2 3 30 30 H 1.08000 * 126.91387 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 334.70930 * 5 4 3 32 32 H 1.09001 * 109.46980 * 214.71030 * 5 4 3 33 33 H 1.09004 * 109.53525 * 264.66133 * 7 6 5 34 34 H 1.09006 * 109.52919 * 24.88334 * 7 6 5 35 35 H 1.08998 * 109.42868 * 332.35998 * 8 7 6 36 36 H 1.09005 * 109.43914 * 212.43558 * 8 7 6 37 37 H 1.08998 * 109.11374 * 199.51700 * 9 8 7 38 38 H 1.08998 * 109.06803 * 80.42087 * 9 8 7 39 39 H 1.09004 * 109.47484 * 300.00087 * 13 11 10 40 40 H 1.09007 * 109.46712 * 59.99605 * 13 11 10 41 41 H 0.97002 * 120.00265 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.43764 * 329.67463 * 23 10 9 43 43 H 1.09001 * 109.39593 * 209.78990 * 23 10 9 44 44 H 1.08995 * 109.38795 * 311.83509 * 24 6 5 45 45 H 1.08997 * 109.39009 * 71.52762 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 -0.0041 5 6 4.7880 1.4733 -0.0090 6 7 5.2637 1.6501 1.3696 7 6 6.2165 2.7554 1.4574 8 6 6.0317 3.4646 2.7815 9 6 6.9832 2.8607 3.8281 10 7 7.0618 1.3924 3.6975 11 6 8.2642 0.7947 3.8138 12 8 8.3549 -0.4102 3.7109 13 6 9.4959 1.6238 4.0719 14 16 10.9416 0.5398 4.1773 15 6 12.2001 1.7366 4.4753 16 1 11.9452 2.7840 4.5388 17 6 13.5194 1.3330 4.6274 18 7 13.8303 0.0563 4.5496 19 14 14.8538 2.6017 4.9426 20 1 15.0077 2.8051 6.4055 21 1 16.1379 2.1217 4.3718 22 1 14.4765 3.8867 4.3012 23 6 5.8957 0.5693 3.4493 24 6 5.6797 0.4172 1.9242 25 7 3.4576 -0.6952 0.0029 26 7 2.2191 -1.0431 0.0052 27 1 -0.3635 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5186 29 1 -0.3633 -0.8926 -0.5092 30 1 1.9382 2.1281 0.0004 31 1 4.5758 2.4482 -0.4479 32 1 5.5557 0.9698 -0.5965 33 1 7.2327 2.3668 1.3909 34 1 6.0387 3.4555 0.6411 35 1 5.0013 3.3451 3.1160 36 1 6.2530 4.5249 2.6590 37 1 6.6220 3.1113 4.8255 38 1 7.9779 3.2849 3.6918 39 1 9.6329 2.3345 3.2568 40 1 9.3791 2.1656 5.0105 41 1 14.7523 -0.2258 4.6563 42 1 5.0186 1.0391 3.8947 43 1 6.0455 -0.4144 3.8943 44 1 4.9158 -0.3383 1.7406 45 1 6.6136 0.1065 1.4559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194919440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:07 Heat of formation + Delta-G solvation = 88.836642 kcal Electronic energy + Delta-G solvation = -27107.887124 eV Core-core repulsion = 23289.875207 eV Total energy + Delta-G solvation = -3818.011918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.51471 -40.13260 -38.08356 -35.56569 -34.68022 -32.67822 -32.39644 -31.97815 -29.99768 -28.46693 -27.85400 -26.45072 -25.51092 -24.99943 -22.60224 -22.04149 -21.39067 -20.61859 -18.85074 -17.73695 -17.46860 -17.06156 -16.60330 -16.18027 -15.78957 -15.62235 -15.16918 -15.11525 -14.77986 -14.30573 -13.94906 -13.79955 -13.75602 -13.59934 -13.40402 -13.12498 -12.79777 -12.59155 -12.35656 -12.04727 -11.98405 -11.59706 -11.42551 -11.31489 -11.07383 -11.04250 -10.99161 -10.97769 -10.94931 -10.72097 -10.33263 -9.76602 -9.49513 -9.24692 -9.03864 -8.44657 -8.27322 -8.17266 -6.46217 -6.18454 -3.88761 1.30856 2.03878 2.23317 3.03793 3.14118 3.24008 3.28741 3.32519 3.66211 3.80423 4.02770 4.22038 4.23106 4.47826 4.55747 4.67469 4.73508 4.76763 4.88272 4.94588 5.05695 5.12606 5.16312 5.17668 5.36402 5.43722 5.50015 5.50809 5.59330 5.63966 5.74204 5.79188 5.82669 5.84371 5.92054 6.03688 6.08327 6.13257 6.16945 6.24524 6.84892 6.99953 7.25844 7.61677 7.63952 8.26253 8.37997 8.66710 9.26527 10.88895 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.002204 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.597262 B =12699.316540 C =13077.895488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.298 5.298 3 C -0.035 4.035 4 C -0.011 4.011 5 C 0.147 3.853 6 N -0.557 5.557 7 C 0.071 3.929 8 C -0.128 4.128 9 C 0.107 3.893 10 N -0.616 5.616 11 C 0.527 3.473 12 O -0.515 6.515 13 C -0.150 4.150 14 S -0.062 6.062 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.124 3.876 24 C 0.055 3.945 25 N -0.260 5.260 26 N -0.088 5.088 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.190 0.810 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.117 9.667 -9.145 32.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.091 5.091 3 C -0.186 4.186 4 C -0.149 4.149 5 C 0.018 3.982 6 N -0.282 5.282 7 C -0.056 4.056 8 C -0.167 4.167 9 C -0.016 4.016 10 N -0.352 5.352 11 C 0.315 3.685 12 O -0.389 6.389 13 C -0.300 4.300 14 S 0.164 5.836 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C 0.000 4.000 24 C -0.075 4.075 25 N -0.128 5.128 26 N -0.067 5.067 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.207 0.793 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -29.194 6.314 -9.012 31.199 hybrid contribution 1.062 3.229 -0.071 3.399 sum -28.132 9.542 -9.083 31.064 Atomic orbital electron populations 1.22247 0.72851 1.05802 1.05017 1.47247 1.09357 1.05038 1.47496 1.23325 0.90788 0.94564 1.09935 1.21875 0.95215 0.91225 1.06616 1.20241 0.90797 0.97402 0.89794 1.58355 1.43238 1.08309 1.18295 1.21541 0.94403 0.91983 0.97632 1.21861 1.00758 0.99185 0.94879 1.21992 1.01225 0.79615 0.98797 1.47858 1.07274 1.06880 1.73181 1.20398 0.83988 0.88463 0.75698 1.90697 1.85293 1.14522 1.48357 1.23570 0.98627 1.03666 1.04180 1.85432 0.94370 1.09829 1.93922 1.22856 0.93894 0.94631 1.56877 0.90994 1.24994 0.97953 0.95924 0.94755 1.70022 1.19336 1.14372 1.46511 0.86178 0.80194 0.80635 0.78544 1.20293 1.20776 1.19714 1.21418 0.87550 0.96293 0.94696 1.21761 1.00054 0.90350 0.95299 1.75110 1.09368 1.12183 1.16104 1.78349 0.96460 1.12055 1.19839 0.89073 0.88373 0.88101 0.79340 0.89126 0.92772 0.93367 0.90986 0.90321 0.90291 0.91905 0.89691 0.89453 0.89402 0.92213 0.90671 0.89522 0.89185 0.94761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.39 59.85 0.68 0.88 16 2 N -0.30 -2.32 3.74 -68.06 -0.25 -2.58 16 3 C -0.03 -0.25 11.55 -17.05 -0.20 -0.45 16 4 C -0.01 -0.11 5.95 -82.78 -0.49 -0.61 16 5 C 0.15 1.38 5.52 -4.98 -0.03 1.35 16 6 N -0.56 -5.92 3.84 -240.90 -0.93 -6.85 16 7 C 0.07 0.70 5.32 -5.05 -0.03 0.67 16 8 C -0.13 -1.10 5.79 -27.16 -0.16 -1.25 16 9 C 0.11 1.19 5.99 -3.01 -0.02 1.18 16 10 N -0.62 -9.20 2.18 -172.44 -0.38 -9.58 16 11 C 0.53 10.43 7.65 -10.98 -0.08 10.35 16 12 O -0.51 -12.28 15.29 5.56 0.09 -12.19 16 13 C -0.15 -3.12 4.49 36.01 0.16 -2.96 16 14 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 15 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 19 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.12 1.74 5.51 -3.97 -0.02 1.72 16 24 C 0.06 0.76 5.26 -5.74 -0.03 0.72 16 25 N -0.26 -3.49 11.14 33.29 0.37 -3.12 16 26 N -0.09 -1.05 13.17 60.35 0.79 -0.26 16 27 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.10 -0.03 8.14 -51.92 -0.42 -0.45 16 29 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.09 0.58 7.57 -51.93 -0.39 0.19 16 32 H 0.05 0.59 8.11 -51.93 -0.42 0.16 16 33 H 0.05 0.61 7.32 -51.93 -0.38 0.23 16 34 H 0.07 0.54 7.37 -51.93 -0.38 0.16 16 35 H 0.08 0.67 7.98 -51.93 -0.41 0.25 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.98 5.87 -51.93 -0.30 0.68 16 39 H 0.09 1.68 7.41 -51.91 -0.38 1.30 16 40 H 0.09 1.70 8.04 -51.91 -0.42 1.28 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.09 1.38 7.28 -51.93 -0.38 1.01 16 44 H 0.09 1.30 5.89 -51.93 -0.31 1.00 16 45 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -38.32 377.39 -7.84 -46.16 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.71 Total: -2.66 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.01 Total: -1.49 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.34 Total: -48.13 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.32 -7.84 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.000 kcal (2) G-P(sol) polarization free energy of solvation -38.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds