Wall clock time and date at job start Tue Mar 31 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35309 * 125.86961 * 2 1 4 4 C 1.35348 * 106.17682 * 180.18121 * 3 2 1 5 5 C 1.50703 * 126.75397 * 179.84897 * 4 3 2 6 6 N 1.46899 * 109.47107 * 94.70843 * 5 4 3 7 7 C 1.46194 * 111.00246 * 197.08058 * 6 5 4 8 8 C 1.51327 * 109.10612 * 144.77479 * 7 6 5 9 9 C 1.53800 * 109.62634 * 92.39908 * 8 7 6 10 10 N 1.47617 * 111.30246 * 319.98199 * 9 8 7 11 11 C 1.34774 * 118.75065 * 138.31718 * 10 9 8 12 12 O 1.21273 * 120.00438 * 179.97438 * 11 10 9 13 13 C 1.50704 * 119.99724 * 359.97438 * 11 10 9 14 14 S 1.81003 * 109.47038 * 179.97438 * 13 11 10 15 15 C 1.76204 * 99.99593 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00462 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99396 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00541 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46675 * 90.00003 * 19 17 15 21 21 H 1.48490 * 109.47199 * 209.99897 * 19 17 15 22 22 H 1.48497 * 109.47048 * 330.00113 * 19 17 15 23 23 C 1.44882 * 122.50257 * 318.30140 * 10 9 8 24 24 C 1.41445 * 110.99652 * 66.04722 * 6 5 4 25 25 N 1.33770 * 106.49568 * 359.58529 * 4 3 2 26 26 N 1.28640 * 108.88442 * 0.26547 * 25 4 3 27 27 H 1.08996 * 109.47898 * 270.30332 * 1 2 3 28 28 H 1.09008 * 109.46675 * 30.30479 * 1 2 3 29 29 H 1.08999 * 109.46858 * 150.29712 * 1 2 3 30 30 H 1.08000 * 126.91387 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 334.70930 * 5 4 3 32 32 H 1.09001 * 109.46980 * 214.71030 * 5 4 3 33 33 H 1.09004 * 109.53525 * 264.66133 * 7 6 5 34 34 H 1.09006 * 109.52919 * 24.88334 * 7 6 5 35 35 H 1.08998 * 109.42868 * 332.35998 * 8 7 6 36 36 H 1.09005 * 109.43914 * 212.43558 * 8 7 6 37 37 H 1.08998 * 109.11374 * 199.51700 * 9 8 7 38 38 H 1.08998 * 109.06803 * 80.42087 * 9 8 7 39 39 H 1.09004 * 109.47484 * 300.00087 * 13 11 10 40 40 H 1.09007 * 109.46712 * 59.99605 * 13 11 10 41 41 H 0.97002 * 120.00265 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.43764 * 329.67463 * 23 10 9 43 43 H 1.09001 * 109.39593 * 209.78990 * 23 10 9 44 44 H 1.08995 * 109.38795 * 311.83509 * 24 6 5 45 45 H 1.08997 * 109.39009 * 71.52762 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 -0.0041 5 6 4.7880 1.4733 -0.0090 6 7 5.2637 1.6501 1.3696 7 6 6.2165 2.7554 1.4574 8 6 6.0317 3.4646 2.7815 9 6 6.9832 2.8607 3.8281 10 7 7.0618 1.3924 3.6975 11 6 8.2642 0.7947 3.8138 12 8 8.3549 -0.4102 3.7109 13 6 9.4959 1.6238 4.0719 14 16 10.9416 0.5398 4.1773 15 6 12.2001 1.7366 4.4753 16 1 11.9452 2.7840 4.5388 17 6 13.5194 1.3330 4.6274 18 7 13.8303 0.0563 4.5496 19 14 14.8538 2.6017 4.9426 20 1 15.0077 2.8051 6.4055 21 1 16.1379 2.1217 4.3718 22 1 14.4765 3.8867 4.3012 23 6 5.8957 0.5693 3.4493 24 6 5.6797 0.4172 1.9242 25 7 3.4576 -0.6952 0.0029 26 7 2.2191 -1.0431 0.0052 27 1 -0.3635 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5186 29 1 -0.3633 -0.8926 -0.5092 30 1 1.9382 2.1281 0.0004 31 1 4.5758 2.4482 -0.4479 32 1 5.5557 0.9698 -0.5965 33 1 7.2327 2.3668 1.3909 34 1 6.0387 3.4555 0.6411 35 1 5.0013 3.3451 3.1160 36 1 6.2530 4.5249 2.6590 37 1 6.6220 3.1113 4.8255 38 1 7.9779 3.2849 3.6918 39 1 9.6329 2.3345 3.2568 40 1 9.3791 2.1656 5.0105 41 1 14.7523 -0.2258 4.6563 42 1 5.0186 1.0391 3.8947 43 1 6.0455 -0.4144 3.8943 44 1 4.9158 -0.3383 1.7406 45 1 6.6136 0.1065 1.4559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194919440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:06 Heat of formation + Delta-G solvation = 60.302278 kcal Electronic energy + Delta-G solvation = -27109.124467 eV Core-core repulsion = 23289.875207 eV Total energy + Delta-G solvation = -3819.249260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.17454 -41.39756 -39.27555 -36.63143 -35.38550 -34.58899 -33.64533 -32.83522 -31.34559 -29.18939 -28.72165 -27.67129 -27.34119 -25.99418 -23.59079 -22.82231 -22.14120 -21.47833 -20.39057 -19.42826 -18.25247 -18.03963 -17.65197 -17.35084 -16.92596 -16.88212 -16.46649 -16.28477 -16.01282 -15.73533 -15.16305 -14.87588 -14.61275 -14.53100 -14.42592 -14.01470 -13.76484 -13.74149 -13.50569 -13.19344 -13.03092 -12.99332 -12.88715 -12.71441 -12.64078 -12.42528 -12.22415 -11.84775 -11.80918 -11.69315 -11.68137 -11.14432 -10.97107 -10.84105 -10.25959 -10.17917 -9.68115 -9.24733 -8.68856 -8.34475 -6.13730 0.72010 1.25664 1.42762 1.46084 1.46955 1.56357 1.57334 1.65509 2.13141 2.27375 2.98901 2.99448 3.24746 3.45938 3.69205 3.77765 3.87699 3.96869 4.11761 4.13551 4.15706 4.22578 4.30341 4.34727 4.37951 4.41523 4.49175 4.56019 4.67732 4.68284 4.69092 4.76933 4.84319 4.90954 5.00122 5.05319 5.16716 5.19838 5.33274 5.41147 5.69022 5.76100 6.11005 6.18682 6.20437 6.39522 7.06110 7.15928 7.56547 8.74860 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.002204 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.597262 B =12699.316540 C =13077.895488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.290 5.290 3 C -0.010 4.010 4 C -0.037 4.037 5 C 0.148 3.852 6 N -0.545 5.545 7 C 0.067 3.933 8 C -0.115 4.115 9 C 0.094 3.906 10 N -0.599 5.599 11 C 0.523 3.477 12 O -0.569 6.569 13 C -0.119 4.119 14 S -0.159 6.159 15 C -0.543 4.543 16 H 0.085 0.915 17 C 0.011 3.989 18 N -0.913 5.913 19 Si 1.001 2.999 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.255 1.255 23 C 0.127 3.873 24 C 0.074 3.926 25 N -0.313 5.313 26 N -0.131 5.131 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.238 0.762 31 H 0.132 0.868 32 H 0.028 0.972 33 H 0.013 0.987 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.080 0.920 45 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.575 14.665 -9.206 36.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.083 5.083 3 C -0.162 4.162 4 C -0.177 4.177 5 C 0.020 3.980 6 N -0.270 5.270 7 C -0.060 4.060 8 C -0.154 4.154 9 C -0.027 4.027 10 N -0.333 5.333 11 C 0.311 3.689 12 O -0.448 6.448 13 C -0.270 4.270 14 S 0.068 5.932 15 C -0.691 4.691 16 H 0.103 0.897 17 C -0.194 4.194 18 N -0.549 5.549 19 Si 0.822 3.178 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.179 1.179 23 C 0.003 3.997 24 C -0.057 4.057 25 N -0.180 5.180 26 N -0.110 5.110 27 H 0.123 0.877 28 H 0.153 0.847 29 H 0.120 0.880 30 H 0.254 0.746 31 H 0.150 0.850 32 H 0.046 0.954 33 H 0.032 0.968 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -31.726 11.339 -9.080 34.894 hybrid contribution 1.605 1.728 -0.100 2.361 sum -30.122 13.067 -9.179 34.093 Atomic orbital electron populations 1.22722 0.69881 1.07742 1.06547 1.47695 1.11004 1.04387 1.45260 1.23962 0.89402 0.96103 1.06764 1.22162 0.96870 0.90499 1.08138 1.20364 0.89941 0.99050 0.88656 1.58456 1.42701 1.06799 1.19053 1.21706 0.92284 0.92041 0.99977 1.21846 1.00428 1.00402 0.92693 1.22418 1.02392 0.76620 1.01308 1.47881 1.05661 1.08854 1.70860 1.20316 0.85195 0.87673 0.75758 1.90679 1.86164 1.16680 1.51237 1.23366 0.95573 1.02181 1.05887 1.85683 0.98946 1.14259 1.94314 1.23183 0.94198 0.94857 1.56856 0.89726 1.26187 1.00806 0.98311 0.94072 1.70201 1.20041 1.16983 1.47689 0.84918 0.76209 0.77808 0.78816 1.19240 1.20395 1.17906 1.21455 0.87918 0.95295 0.94995 1.21440 0.97513 0.91928 0.94836 1.75042 1.10606 1.14451 1.17853 1.78257 0.96593 1.13913 1.22201 0.87683 0.84702 0.88003 0.74609 0.85025 0.95403 0.96838 0.87608 0.89144 0.86947 0.89694 0.89876 0.87555 0.87375 0.92036 0.87529 0.92348 0.90233 0.99256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 11.39 127.77 1.46 1.60 16 2 N -0.29 -3.97 3.74 -369.24 -1.38 -5.35 16 3 C -0.01 -0.11 11.55 83.49 0.96 0.85 16 4 C -0.04 -0.73 5.95 41.60 0.25 -0.48 16 5 C 0.15 2.58 5.52 85.56 0.47 3.05 16 6 N -0.55 -10.77 3.84 -916.09 -3.52 -14.29 16 7 C 0.07 1.12 5.32 85.89 0.46 1.57 16 8 C -0.12 -1.46 5.79 30.32 0.18 -1.28 16 9 C 0.09 1.81 5.99 86.44 0.52 2.33 16 10 N -0.60 -17.65 2.18 -817.88 -1.79 -19.43 16 11 C 0.52 21.38 7.65 87.66 0.67 22.05 16 12 O -0.57 -29.07 15.29 -3.01 -0.05 -29.12 16 13 C -0.12 -5.00 4.49 71.24 0.32 -4.68 16 14 S -0.16 -9.22 20.57 -56.49 -1.16 -10.38 16 15 C -0.54 -31.59 9.50 67.95 0.65 -30.94 16 16 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 17 C 0.01 0.62 5.49 84.86 0.47 1.09 16 18 N -0.91 -57.34 13.22 21.65 0.29 -57.05 16 19 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 23 C 0.13 3.59 5.51 87.29 0.48 4.07 16 24 C 0.07 2.10 5.26 87.91 0.46 2.57 16 25 N -0.31 -8.76 11.14 -48.60 -0.54 -9.30 16 26 N -0.13 -3.19 13.17 37.02 0.49 -2.71 16 27 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.13 -0.70 8.14 -2.38 -0.02 -0.72 16 29 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.24 0.16 8.06 -2.91 -0.02 0.14 16 31 H 0.13 1.16 7.57 -2.39 -0.02 1.14 16 32 H 0.03 0.63 8.11 -2.39 -0.02 0.61 16 33 H 0.01 0.32 7.32 -2.39 -0.02 0.31 16 34 H 0.11 1.10 7.37 -2.38 -0.02 1.09 16 35 H 0.09 1.03 7.98 -2.39 -0.02 1.01 16 36 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.67 5.87 -2.39 -0.01 1.66 16 39 H 0.11 4.04 7.41 -2.39 -0.02 4.02 16 40 H 0.11 4.08 8.04 -2.39 -0.02 4.06 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.11 2.37 8.11 -2.38 -0.02 2.35 16 43 H 0.06 1.99 7.28 -2.39 -0.02 1.98 16 44 H 0.08 2.47 5.89 -2.39 -0.01 2.46 16 45 H -0.01 -0.40 8.12 -2.39 -0.02 -0.42 16 Total: -1.00 -92.55 377.39 2.69 -89.86 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.99 Total: 9.86 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 7.34 Total: 1.80 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -6.45 Total: -108.13 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.16 Total: -10.38 kcal Total: -92.55 2.69 -89.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.161 kcal (2) G-P(sol) polarization free energy of solvation -92.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds