Wall clock time and date at job start Tue Mar 31 2020 22:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34223 * 117.00049 * 2 1 4 4 O 1.20822 * 120.00039 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00031 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.50103 * 59.92451 * 5 3 2 7 7 C 1.53124 * 109.50158 * 180.02562 * 5 3 2 8 8 C 1.53117 * 109.15537 * 177.59626 * 7 5 3 9 9 H 1.09001 * 109.53874 * 62.30665 * 8 7 5 10 10 C 1.53001 * 109.50032 * 182.40051 * 8 7 5 11 11 F 1.39905 * 109.47244 * 179.80097 * 10 8 7 12 12 F 1.39897 * 109.47509 * 299.80546 * 10 8 7 13 13 F 1.39903 * 109.46588 * 59.80866 * 10 8 7 14 14 C 1.53038 * 109.28354 * 302.34528 * 8 7 5 15 15 N 1.46852 * 109.52181 * 59.18184 * 14 8 7 16 16 C 1.46896 * 110.99756 * 174.16595 * 15 14 8 17 17 C 1.52996 * 109.47011 * 176.24637 * 16 15 14 18 18 O 1.42906 * 109.47479 * 62.31490 * 17 16 15 19 19 C 1.42901 * 114.00205 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46983 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99757 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99664 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00344 * 359.73345 * 22 20 19 24 24 Si 1.86805 * 119.99521 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47111 * 269.72717 * 24 22 20 26 26 H 1.48494 * 109.47249 * 29.72821 * 24 22 20 27 27 H 1.48497 * 109.46690 * 149.73184 * 24 22 20 28 28 C 1.46851 * 111.19388 * 298.26098 * 15 14 8 29 29 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47157 * 299.99720 * 1 2 3 31 31 H 1.08997 * 109.46596 * 60.00097 * 1 2 3 32 32 H 1.08992 * 109.52327 * 57.69723 * 7 5 3 33 33 H 1.08994 * 109.57328 * 297.52894 * 7 5 3 34 34 H 1.08995 * 109.45999 * 299.16515 * 14 8 7 35 35 H 1.09000 * 109.45655 * 179.18982 * 14 8 7 36 36 H 1.08998 * 109.47487 * 56.24482 * 16 15 14 37 37 H 1.08999 * 109.46913 * 296.24019 * 16 15 14 38 38 H 1.09005 * 109.47177 * 302.31570 * 17 16 15 39 39 H 1.09003 * 109.47767 * 182.31421 * 17 16 15 40 40 H 1.09001 * 109.46701 * 60.00255 * 19 18 17 41 41 H 1.08994 * 109.47211 * 300.00583 * 19 18 17 42 42 H 0.97003 * 119.99689 * 0.27368 * 23 22 20 43 43 H 1.08999 * 109.45871 * 181.75843 * 28 15 14 44 44 H 1.09002 * 109.46418 * 301.72137 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9570 0.7795 -0.8883 7 6 4.0013 2.7430 0.0011 8 6 5.5296 2.8142 0.0624 9 1 5.9523 2.3437 -0.8254 10 6 5.9706 4.2780 0.1236 11 9 7.3669 4.3423 0.1842 12 9 5.5220 4.9485 -1.0193 13 9 5.4263 4.8816 1.2623 14 6 6.0201 2.0800 1.3123 15 7 5.5791 0.6801 1.2639 16 6 6.1477 -0.0897 2.3783 17 6 5.5933 -1.5154 2.3485 18 8 5.9910 -2.1559 1.1345 19 6 5.5230 -3.5001 1.0062 20 6 5.9980 -4.0744 -0.3037 21 1 6.5976 -3.4732 -0.9711 22 6 5.6679 -5.3676 -0.6494 23 7 4.9431 -6.1017 0.1662 24 14 6.2573 -6.0797 -2.2727 25 1 5.2473 -5.8099 -3.3274 26 1 7.5477 -5.4494 -2.6504 27 1 6.4452 -7.5459 -2.1308 28 6 4.1137 0.5852 1.2523 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.5781 3.2479 0.8693 33 1 3.6503 3.2281 -0.9096 34 1 5.6086 2.5599 2.2002 35 1 7.1088 2.1166 1.3512 36 1 5.8792 0.3848 3.3221 37 1 7.2330 -0.1199 2.2826 38 1 4.5051 -1.4833 2.4028 39 1 5.9831 -2.0748 3.1990 40 1 4.4334 -3.5095 1.0328 41 1 5.9117 -4.1002 1.8288 42 1 4.6373 -5.7320 1.0092 43 1 3.8177 -0.4638 1.2478 44 1 3.7111 1.0721 2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196065219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:19 Heat of formation + Delta-G solvation = -289.247499 kcal Electronic energy + Delta-G solvation = -31210.731194 eV Core-core repulsion = 26327.129204 eV Total energy + Delta-G solvation = -4883.601990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.33462 -47.80515 -47.79930 -40.92553 -39.22314 -37.00173 -36.52481 -34.31719 -32.86506 -32.43665 -29.18345 -27.94043 -26.37718 -26.24094 -24.52908 -23.96531 -22.50547 -21.44111 -20.90758 -20.16870 -18.58006 -18.49732 -18.20906 -17.35586 -16.97836 -16.69721 -16.48622 -16.03118 -15.68707 -15.37085 -14.84890 -14.64966 -14.54164 -14.36987 -14.19933 -13.98645 -13.95397 -13.88322 -13.79329 -13.68892 -13.46160 -13.21391 -13.06669 -12.52204 -12.39549 -12.16484 -11.87517 -11.81939 -11.44644 -11.38619 -11.33251 -11.05466 -10.91090 -10.81096 -10.68864 -10.51464 -10.15795 -10.09925 -8.85579 -8.63754 -8.42644 -8.23375 -6.45606 -4.13878 2.00300 2.33950 2.64852 3.39441 3.43138 3.47204 3.63615 3.64195 3.78831 3.89894 4.37430 4.40817 4.43176 4.55844 4.62773 4.70775 4.83670 4.93549 4.99336 5.04782 5.05535 5.18627 5.22760 5.32280 5.37178 5.41278 5.43512 5.48346 5.58663 5.66950 5.81367 5.85435 5.96441 6.07999 6.23187 6.74206 6.86933 6.88502 7.12470 7.57307 7.89906 8.18734 8.65647 8.81647 9.56510 10.94694 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.003401 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.012195 B = 8229.879344 C = 9493.721200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.348 6.348 3 C 0.472 3.528 4 O -0.510 6.510 5 C -0.074 4.074 6 H 0.129 0.871 7 C -0.103 4.103 8 C -0.131 4.131 9 H 0.131 0.869 10 C 0.459 3.541 11 F -0.181 7.181 12 F -0.181 7.181 13 F -0.183 7.183 14 C 0.055 3.945 15 N -0.516 5.516 16 C 0.065 3.935 17 C 0.056 3.944 18 O -0.369 6.369 19 C 0.185 3.815 20 C -0.592 4.592 21 H 0.061 0.939 22 C 0.017 3.983 23 N -0.913 5.913 24 Si 1.080 2.920 25 H -0.286 1.286 26 H -0.286 1.286 27 H -0.284 1.284 28 C 0.058 3.942 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.043 0.957 40 H -0.006 1.006 41 H -0.008 1.008 42 H 0.266 0.734 43 H 0.106 0.894 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 19.409 2.997 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.264 6.264 3 C 0.314 3.686 4 O -0.398 6.398 5 C -0.093 4.093 6 H 0.147 0.853 7 C -0.141 4.141 8 C -0.151 4.151 9 H 0.149 0.851 10 C 0.405 3.595 11 F -0.162 7.162 12 F -0.162 7.162 13 F -0.165 7.165 14 C -0.073 4.073 15 N -0.240 5.240 16 C -0.062 4.062 17 C -0.022 4.022 18 O -0.288 6.288 19 C 0.110 3.890 20 C -0.630 4.630 21 H 0.080 0.920 22 C -0.186 4.186 23 N -0.549 5.549 24 Si 0.907 3.093 25 H -0.213 1.213 26 H -0.212 1.212 27 H -0.209 1.209 28 C -0.070 4.070 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.012 0.988 41 H 0.010 0.990 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.246 18.238 1.495 18.585 hybrid contribution -0.649 1.922 1.965 2.824 sum -3.896 20.159 3.460 20.822 Atomic orbital electron populations 1.23310 0.76157 1.04081 1.02317 1.86599 1.23503 1.32804 1.83449 1.23515 0.91619 0.81474 0.71952 1.90658 1.67154 1.36394 1.45578 1.20972 0.87229 0.97529 1.03595 0.85290 1.21512 0.91859 0.95447 1.05264 1.22471 0.98895 0.89094 1.04601 0.85096 1.20426 0.75015 0.90569 0.73510 1.93196 1.29919 1.97031 1.96068 1.93189 1.89047 1.82970 1.51040 1.93174 1.85710 1.85877 1.51696 1.22091 1.01734 0.89080 0.94410 1.61705 1.07768 1.08818 1.45704 1.22158 1.01037 0.92589 0.90436 1.22413 0.97700 0.92038 0.90043 1.88002 1.75854 1.28987 1.35977 1.20285 0.93144 0.78138 0.97399 1.21906 1.36677 1.00584 1.03822 0.92045 1.25896 0.94911 0.93416 1.04375 1.70776 1.33953 1.39169 1.11050 0.83391 0.76054 0.75887 0.73945 1.21276 1.21218 1.20939 1.22164 0.88028 1.02675 0.94126 0.87750 0.91980 0.91856 0.89808 0.89291 0.93527 0.88870 0.93797 0.89268 0.94225 0.93847 0.98826 0.99012 0.92343 0.87545 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.65 10.49 -39.24 -0.41 -5.06 16 3 C 0.47 6.19 7.26 36.01 0.26 6.45 16 4 O -0.51 -7.43 15.72 -18.75 -0.29 -7.72 16 5 C -0.07 -0.88 2.79 -91.69 -0.26 -1.13 16 6 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 7 C -0.10 -1.07 3.62 -26.61 -0.10 -1.17 16 8 C -0.13 -1.28 2.33 -90.54 -0.21 -1.49 16 9 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 10 C 0.46 4.62 2.69 37.16 0.10 4.72 16 11 F -0.18 -1.90 16.82 2.25 0.04 -1.87 16 12 F -0.18 -1.93 16.86 2.25 0.04 -1.90 16 13 F -0.18 -1.94 16.22 2.25 0.04 -1.90 16 14 C 0.06 0.57 4.50 -3.83 -0.02 0.55 16 15 N -0.52 -6.69 4.67 -234.68 -1.10 -7.78 16 16 C 0.06 0.85 5.52 -3.83 -0.02 0.83 16 17 C 0.06 0.94 5.56 37.16 0.21 1.15 16 18 O -0.37 -8.42 10.23 -35.23 -0.36 -8.78 16 19 C 0.19 4.87 5.00 36.01 0.18 5.05 16 20 C -0.59 -17.21 9.43 -34.44 -0.32 -17.54 16 21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 23 N -0.91 -27.57 13.65 55.43 0.76 -26.82 16 24 Si 1.08 25.20 29.90 -169.99 -5.08 20.12 16 25 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.06 0.73 4.26 -3.83 -0.02 0.72 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.08 0.90 7.64 -51.93 -0.40 0.50 16 33 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16 34 H 0.05 0.45 7.78 -51.93 -0.40 0.05 16 35 H 0.09 0.91 7.81 -51.93 -0.41 0.51 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.04 0.64 6.05 -51.93 -0.31 0.33 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H -0.01 -0.16 8.01 -51.93 -0.42 -0.57 16 41 H -0.01 -0.21 8.00 -51.93 -0.42 -0.62 16 42 H 0.27 7.98 7.22 -40.82 -0.29 7.68 16 43 H 0.11 1.59 5.79 -51.93 -0.30 1.29 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -33.06 372.12 -6.36 -39.42 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -6.37 Total: -3.28 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 0.77 Total: -0.05 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.34 Total: -34.60 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.07 Total: -21.56 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.11 Total: -5.66 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.06 -6.36 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196065219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.828 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds