Wall clock time and date at job start Tue Mar 31 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34223 * 117.00049 * 2 1 4 4 O 1.20822 * 120.00039 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00031 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.50103 * 59.92451 * 5 3 2 7 7 C 1.53124 * 109.50158 * 180.02562 * 5 3 2 8 8 C 1.53117 * 109.15537 * 177.59626 * 7 5 3 9 9 H 1.09001 * 109.53874 * 62.30665 * 8 7 5 10 10 C 1.53001 * 109.50032 * 182.40051 * 8 7 5 11 11 F 1.39905 * 109.47244 * 179.80097 * 10 8 7 12 12 F 1.39897 * 109.47509 * 299.80546 * 10 8 7 13 13 F 1.39903 * 109.46588 * 59.80866 * 10 8 7 14 14 C 1.53038 * 109.28354 * 302.34528 * 8 7 5 15 15 N 1.46852 * 109.52181 * 59.18184 * 14 8 7 16 16 C 1.46896 * 110.99756 * 174.16595 * 15 14 8 17 17 C 1.52996 * 109.47011 * 176.24637 * 16 15 14 18 18 O 1.42906 * 109.47479 * 62.31490 * 17 16 15 19 19 C 1.42901 * 114.00205 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46983 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99757 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99664 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00344 * 359.73345 * 22 20 19 24 24 Si 1.86805 * 119.99521 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47111 * 269.72717 * 24 22 20 26 26 H 1.48494 * 109.47249 * 29.72821 * 24 22 20 27 27 H 1.48497 * 109.46690 * 149.73184 * 24 22 20 28 28 C 1.46851 * 111.19388 * 298.26098 * 15 14 8 29 29 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47157 * 299.99720 * 1 2 3 31 31 H 1.08997 * 109.46596 * 60.00097 * 1 2 3 32 32 H 1.08992 * 109.52327 * 57.69723 * 7 5 3 33 33 H 1.08994 * 109.57328 * 297.52894 * 7 5 3 34 34 H 1.08995 * 109.45999 * 299.16515 * 14 8 7 35 35 H 1.09000 * 109.45655 * 179.18982 * 14 8 7 36 36 H 1.08998 * 109.47487 * 56.24482 * 16 15 14 37 37 H 1.08999 * 109.46913 * 296.24019 * 16 15 14 38 38 H 1.09005 * 109.47177 * 302.31570 * 17 16 15 39 39 H 1.09003 * 109.47767 * 182.31421 * 17 16 15 40 40 H 1.09001 * 109.46701 * 60.00255 * 19 18 17 41 41 H 1.08994 * 109.47211 * 300.00583 * 19 18 17 42 42 H 0.97003 * 119.99689 * 0.27368 * 23 22 20 43 43 H 1.08999 * 109.45871 * 181.75843 * 28 15 14 44 44 H 1.09002 * 109.46418 * 301.72137 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9570 0.7795 -0.8883 7 6 4.0013 2.7430 0.0011 8 6 5.5296 2.8142 0.0624 9 1 5.9523 2.3437 -0.8254 10 6 5.9706 4.2780 0.1236 11 9 7.3669 4.3423 0.1842 12 9 5.5220 4.9485 -1.0193 13 9 5.4263 4.8816 1.2623 14 6 6.0201 2.0800 1.3123 15 7 5.5791 0.6801 1.2639 16 6 6.1477 -0.0897 2.3783 17 6 5.5933 -1.5154 2.3485 18 8 5.9910 -2.1559 1.1345 19 6 5.5230 -3.5001 1.0062 20 6 5.9980 -4.0744 -0.3037 21 1 6.5976 -3.4732 -0.9711 22 6 5.6679 -5.3676 -0.6494 23 7 4.9431 -6.1017 0.1662 24 14 6.2573 -6.0797 -2.2727 25 1 5.2473 -5.8099 -3.3274 26 1 7.5477 -5.4494 -2.6504 27 1 6.4452 -7.5459 -2.1308 28 6 4.1137 0.5852 1.2523 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.5781 3.2479 0.8693 33 1 3.6503 3.2281 -0.9096 34 1 5.6086 2.5599 2.2002 35 1 7.1088 2.1166 1.3512 36 1 5.8792 0.3848 3.3221 37 1 7.2330 -0.1199 2.2826 38 1 4.5051 -1.4833 2.4028 39 1 5.9831 -2.0748 3.1990 40 1 4.4334 -3.5095 1.0328 41 1 5.9117 -4.1002 1.8288 42 1 4.6373 -5.7320 1.0092 43 1 3.8177 -0.4638 1.2478 44 1 3.7111 1.0721 2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196065219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:18 Heat of formation + Delta-G solvation = -310.338405 kcal Electronic energy + Delta-G solvation = -31211.645764 eV Core-core repulsion = 26327.129204 eV Total energy + Delta-G solvation = -4884.516560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.15187 -48.62816 -48.61519 -41.93347 -40.23819 -38.55054 -37.64499 -35.61032 -34.81583 -33.35219 -30.52557 -28.78928 -28.34365 -27.13155 -25.48459 -25.02840 -24.64163 -22.38038 -22.00442 -21.09003 -19.41474 -19.32376 -19.20155 -19.06455 -18.32599 -17.75698 -17.48824 -17.39324 -16.96096 -16.39189 -15.91395 -15.76082 -15.66757 -15.51737 -15.39284 -15.05063 -14.99423 -14.89495 -14.77946 -14.73162 -14.51387 -14.41467 -14.22787 -14.03116 -13.57221 -13.31436 -13.11298 -12.97412 -12.76175 -12.72183 -12.45211 -12.23451 -12.16217 -12.02808 -11.88871 -11.85286 -11.55804 -11.52828 -10.78361 -10.77432 -10.24781 -9.38660 -8.76749 -6.46899 0.96750 1.46526 1.55942 1.65080 1.78696 1.84656 2.51268 2.53961 2.79264 2.96052 3.00384 3.09702 3.17586 3.48916 3.52806 3.68713 3.75191 3.92411 4.04269 4.10501 4.14323 4.19724 4.22937 4.27345 4.33402 4.43511 4.54011 4.58520 4.60733 4.62962 4.65426 4.71926 4.85626 4.90460 4.97303 5.00452 5.26381 5.75004 5.86368 5.93092 6.02026 6.41505 6.56394 6.75939 7.33345 8.64551 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.003401 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.012195 B = 8229.879344 C = 9493.721200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.474 3.526 4 O -0.526 6.526 5 C -0.070 4.070 6 H 0.124 0.876 7 C -0.096 4.096 8 C -0.124 4.124 9 H 0.135 0.865 10 C 0.465 3.535 11 F -0.182 7.182 12 F -0.184 7.184 13 F -0.185 7.185 14 C 0.057 3.943 15 N -0.535 5.535 16 C 0.072 3.928 17 C 0.046 3.954 18 O -0.383 6.383 19 C 0.197 3.803 20 C -0.615 4.615 21 H 0.053 0.947 22 C -0.028 4.028 23 N -0.932 5.932 24 Si 1.126 2.874 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.278 1.278 28 C 0.063 3.937 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.050 0.950 40 H -0.020 1.020 41 H -0.022 1.022 42 H 0.256 0.744 43 H 0.079 0.921 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 20.395 2.691 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.318 3.682 4 O -0.415 6.415 5 C -0.089 4.089 6 H 0.142 0.858 7 C -0.134 4.134 8 C -0.144 4.144 9 H 0.153 0.847 10 C 0.411 3.589 11 F -0.163 7.163 12 F -0.166 7.166 13 F -0.166 7.166 14 C -0.071 4.071 15 N -0.259 5.259 16 C -0.055 4.055 17 C -0.031 4.031 18 O -0.303 6.303 19 C 0.122 3.878 20 C -0.653 4.653 21 H 0.071 0.929 22 C -0.225 4.225 23 N -0.569 5.569 24 Si 0.946 3.054 25 H -0.194 1.194 26 H -0.195 1.195 27 H -0.203 1.203 28 C -0.065 4.065 29 H 0.140 0.860 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.069 0.931 40 H -0.002 1.002 41 H -0.004 1.004 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.769 19.253 1.215 19.489 hybrid contribution -0.847 1.672 2.141 2.846 sum -3.616 20.925 3.357 21.498 Atomic orbital electron populations 1.23568 0.74542 1.05502 1.02951 1.86589 1.25323 1.33053 1.83290 1.23686 0.92001 0.81180 0.71355 1.90643 1.67616 1.36788 1.46486 1.20949 0.86475 0.98457 1.03062 0.85794 1.21447 0.92258 0.94220 1.05433 1.22404 0.98350 0.88958 1.04704 0.84701 1.20347 0.74855 0.90412 0.73297 1.93196 1.30060 1.97030 1.96062 1.93186 1.89084 1.83051 1.51258 1.93173 1.85732 1.85939 1.51783 1.22125 1.02305 0.87573 0.95052 1.61645 1.07771 1.10467 1.46050 1.22105 1.00929 0.90275 0.92159 1.22765 0.98458 0.93940 0.87898 1.87945 1.76005 1.27134 1.39172 1.19908 0.92039 0.79948 0.95913 1.22256 1.36929 1.01212 1.04905 0.92875 1.27471 0.94014 0.93906 1.07145 1.70899 1.35213 1.39546 1.11199 0.82828 0.76728 0.75528 0.70297 1.19412 1.19500 1.20326 1.22026 0.88203 1.01211 0.95024 0.86039 0.91284 0.91315 0.89825 0.88986 0.92286 0.87991 0.90458 0.89021 0.93753 0.93145 1.00190 1.00406 0.93510 0.90246 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -9.78 10.49 -51.35 -0.54 -10.32 16 3 C 0.47 12.28 7.26 71.24 0.52 12.80 16 4 O -0.53 -14.99 15.72 21.98 0.35 -14.65 16 5 C -0.07 -1.62 2.79 -11.49 -0.03 -1.65 16 6 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 7 C -0.10 -1.86 3.62 30.67 0.11 -1.75 16 8 C -0.12 -2.21 2.33 -10.74 -0.02 -2.24 16 9 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 10 C 0.47 8.47 2.69 71.98 0.19 8.66 16 11 F -0.18 -3.47 16.82 44.97 0.76 -2.72 16 12 F -0.18 -3.64 16.86 44.97 0.76 -2.88 16 13 F -0.18 -3.53 16.22 44.97 0.73 -2.80 16 14 C 0.06 1.05 4.50 86.33 0.39 1.44 16 15 N -0.53 -13.03 4.67 -896.38 -4.19 -17.22 16 16 C 0.07 1.76 5.52 86.30 0.48 2.24 16 17 C 0.05 1.54 5.56 71.98 0.40 1.94 16 18 O -0.38 -17.64 10.23 -148.98 -1.52 -19.16 16 19 C 0.20 10.65 5.00 71.24 0.36 11.00 16 20 C -0.62 -36.23 9.43 25.60 0.24 -35.99 16 21 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 22 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 23 N -0.93 -56.77 13.65 21.45 0.29 -56.48 16 24 Si 1.13 49.88 29.90 68.60 2.05 51.93 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 C 0.06 1.55 4.26 86.32 0.37 1.92 16 29 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 31 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 32 H 0.08 1.65 7.64 -2.39 -0.02 1.63 16 33 H 0.09 1.75 7.88 -2.39 -0.02 1.73 16 34 H 0.06 0.97 7.78 -2.39 -0.02 0.95 16 35 H 0.10 1.73 7.81 -2.39 -0.02 1.71 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.44 6.05 -2.38 -0.01 1.42 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 41 H -0.02 -1.20 8.00 -2.39 -0.02 -1.22 16 42 H 0.26 15.69 7.22 -92.71 -0.67 15.02 16 43 H 0.08 2.39 5.79 -2.39 -0.01 2.38 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.50 372.12 4.45 -66.05 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.11 Total: 9.29 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 4.65 Total: -1.05 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -3.89 Total: -73.70 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.72 Total: -44.13 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 2.24 Total: -8.40 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.05 Total: 51.93 kcal Total: -70.50 4.45 -66.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196065219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.285 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -314.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -310.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds