Wall clock time and date at job start Tue Mar 31 2020 23:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99527 * 2 1 4 4 H 1.48504 * 109.46714 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47169 * 299.99874 * 3 2 1 6 6 H 1.48494 * 109.47114 * 60.00568 * 3 2 1 7 7 C 1.38807 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00488 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99850 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00249 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.53045 * 109.45869 * 174.99915 * 11 10 9 13 13 C 1.53196 * 109.31410 * 181.38480 * 12 11 10 14 14 N 1.46927 * 108.89115 * 305.29212 * 13 12 11 15 15 C 1.34777 * 120.63421 * 233.68199 * 14 13 12 16 16 O 1.21554 * 119.99506 * 356.17833 * 15 14 13 17 17 C 1.47835 * 120.00111 * 176.17924 * 15 14 13 18 18 C 1.40025 * 120.55696 * 230.33752 * 17 15 14 19 19 C 1.38362 * 118.28970 * 179.97438 * 18 17 15 20 20 C 1.38348 * 119.29891 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.45646 * 180.02562 * 20 19 18 22 22 F 1.39902 * 109.46937 * 209.99727 * 21 20 19 23 23 F 1.39897 * 109.47128 * 329.99333 * 21 20 19 24 24 N 1.31925 * 121.08195 * 359.97267 * 20 19 18 25 25 C 1.31684 * 121.88140 * 359.77508 * 24 20 19 26 26 C 1.47212 * 118.55714 * 53.54086 * 14 13 12 27 27 C 1.53039 * 109.46023 * 295.06133 * 11 10 9 28 28 H 0.97000 * 120.00665 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00021 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47609 * 59.99541 * 10 9 7 31 31 H 1.08997 * 109.46821 * 299.99533 * 10 9 7 32 32 H 1.08995 * 109.46479 * 55.02390 * 11 10 9 33 33 H 1.08997 * 109.50144 * 61.42988 * 12 11 10 34 34 H 1.09002 * 109.52577 * 301.34775 * 12 11 10 35 35 H 1.08996 * 109.58703 * 65.14304 * 13 12 11 36 36 H 1.08993 * 109.58610 * 185.43564 * 13 12 11 37 37 H 1.07998 * 120.85796 * 0.02562 * 18 17 15 38 38 H 1.08002 * 120.34702 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.47530 * 89.99628 * 21 20 19 40 40 H 1.08004 * 119.72250 * 180.24379 * 25 24 20 41 41 H 1.08998 * 109.53597 * 186.67482 * 26 14 13 42 42 H 1.08997 * 109.67758 * 66.36150 * 26 14 13 43 43 H 1.08997 * 109.50030 * 298.57507 * 27 11 10 44 44 H 1.09007 * 109.49377 * 58.66957 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8196 -0.0012 12 6 1.8254 -6.1413 -0.1270 13 6 0.8250 -7.3010 -0.1621 14 7 -0.0418 -7.2175 1.0213 15 6 -0.1815 -8.2742 1.8462 16 8 0.3570 -9.3303 1.5774 17 6 -0.9895 -8.1487 3.0778 18 6 -0.4721 -8.5567 4.3133 19 6 -1.2687 -8.4177 5.4360 20 6 -2.5389 -7.8856 5.3032 21 6 -3.4094 -7.7320 6.5238 22 9 -4.7538 -7.8509 6.1556 23 9 -3.0904 -8.7285 7.4524 24 7 -3.0001 -7.5096 4.1258 25 6 -2.2787 -7.6173 3.0295 26 6 -0.7506 -5.9548 1.2868 27 6 0.2676 -4.8103 1.3056 28 1 -0.4851 0.8400 0.0004 29 1 0.3557 -2.3881 0.0002 30 1 2.6849 -3.7145 0.8894 31 1 2.6847 -3.7144 -0.8906 32 1 0.3805 -4.7127 -0.8435 33 1 2.4908 -6.2606 0.7280 34 1 2.4111 -6.1382 -1.0462 35 1 0.2182 -7.2329 -1.0649 36 1 1.3637 -8.2485 -0.1544 37 1 0.5235 -8.9686 4.3882 38 1 -0.9031 -8.7220 6.4056 39 1 -3.2401 -6.7520 6.9699 40 1 -2.6896 -7.2949 2.0842 41 1 -1.2515 -6.0143 2.2530 42 1 -1.4872 -5.7757 0.5036 43 1 0.9477 -4.9420 2.1471 44 1 -0.2560 -3.8594 1.4058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205436224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:17 Heat of formation + Delta-G solvation = -85.993626 kcal Electronic energy + Delta-G solvation = -28979.341035 eV Core-core repulsion = 24567.614771 eV Total energy + Delta-G solvation = -4411.726265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.40473 -47.40310 -41.27283 -39.74566 -37.82810 -35.08006 -33.51910 -33.03810 -32.51320 -31.07841 -30.39651 -27.88912 -26.60618 -24.54560 -24.07617 -23.26365 -23.07416 -21.78828 -20.54364 -19.47314 -18.28979 -18.14065 -17.93338 -17.53196 -17.08264 -16.68422 -16.18807 -15.47880 -15.24621 -14.86711 -14.65919 -14.37837 -14.28428 -14.21557 -13.89136 -13.82676 -13.71024 -13.64941 -13.36979 -13.30616 -13.05984 -12.75719 -12.47931 -12.32781 -11.90405 -11.77000 -11.27121 -11.06259 -10.89634 -10.66484 -10.48799 -10.45715 -10.41258 -10.31630 -10.02088 -9.94619 -9.70700 -9.56400 -8.92290 -8.82195 -6.96310 -5.81405 -3.09731 0.08730 0.65998 2.28361 2.65045 2.86143 3.15746 3.39940 3.46003 3.47923 3.64122 3.79319 4.04783 4.23057 4.32900 4.43263 4.54520 4.64252 4.71312 4.72039 4.91141 4.97157 5.04414 5.05650 5.24489 5.33101 5.39245 5.46107 5.50618 5.56641 5.66920 5.83730 5.84216 5.90521 6.00153 6.09621 6.19067 6.28544 6.37010 6.53267 6.73158 6.84314 7.10047 7.20090 7.66687 7.80153 8.37850 9.49245 10.06673 10.41243 11.41540 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.002560 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.929479 B =10936.068949 C =12675.713763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.095 4.095 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.597 5.597 15 C 0.563 3.437 16 O -0.534 6.534 17 C -0.157 4.157 18 C -0.025 4.025 19 C -0.142 4.142 20 C 0.063 3.937 21 C 0.327 3.673 22 F -0.184 7.184 23 F -0.194 7.194 24 N -0.453 5.453 25 C 0.136 3.864 26 C 0.094 3.906 27 C -0.124 4.124 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.134 0.866 40 H 0.172 0.828 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 -18.852 10.075 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.329 5.329 15 C 0.350 3.650 16 O -0.412 6.412 17 C -0.162 4.162 18 C -0.051 4.051 19 C -0.161 4.161 20 C -0.076 4.076 21 C 0.273 3.727 22 F -0.166 7.166 23 F -0.175 7.175 24 N -0.161 5.161 25 C -0.023 4.023 26 C -0.028 4.028 27 C -0.162 4.162 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.151 0.849 40 H 0.189 0.811 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.814 -18.969 9.882 21.924 hybrid contribution 0.923 0.681 0.046 1.148 sum -3.891 -18.288 9.928 21.170 Atomic orbital electron populations 1.69653 1.05077 1.25567 1.57939 1.24726 0.95531 0.97673 1.03054 0.86132 0.78798 0.84150 0.77210 1.20594 1.21848 1.21866 1.19267 0.91059 0.84192 1.42465 0.91221 1.42378 1.05807 0.99985 1.89486 1.20660 0.93132 0.85350 0.97792 1.21321 0.97913 0.94472 0.97637 1.21924 0.97678 0.93950 1.02923 1.21706 0.92449 1.00292 0.86449 1.48176 1.46324 1.12611 1.25808 1.18010 0.80599 0.83851 0.82541 1.90804 1.48649 1.27367 1.74367 1.21122 0.97198 1.02544 0.95361 1.21630 1.00261 0.93028 0.90183 1.21826 0.94011 0.99504 1.00803 1.21845 0.93711 0.98025 0.94014 1.20107 0.76840 0.91631 0.84170 1.93050 1.34420 1.96918 1.92164 1.93022 1.92571 1.65194 1.66719 1.67325 1.35682 1.15307 0.97778 1.23075 0.89483 0.92673 0.97046 1.22258 0.95392 0.83006 1.02117 1.21923 0.97887 0.98087 0.98332 0.93554 0.78280 0.96462 0.96300 0.90787 0.91541 0.90333 0.90990 0.89039 0.83162 0.82977 0.84887 0.81060 0.89799 0.90286 0.91777 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.64 5.32 -59.92 -0.32 -17.96 16 10 C 0.16 2.98 5.65 -4.05 -0.02 2.96 16 11 C -0.09 -1.35 2.19 -90.58 -0.20 -1.55 16 12 C -0.13 -1.48 5.36 -26.61 -0.14 -1.62 16 13 C 0.11 1.23 6.41 -3.71 -0.02 1.21 16 14 N -0.60 -6.71 2.98 -173.65 -0.52 -7.22 16 15 C 0.56 6.87 7.27 -12.33 -0.09 6.79 16 16 O -0.53 -8.09 16.48 5.32 0.09 -8.01 16 17 C -0.16 -1.64 5.04 -104.82 -0.53 -2.17 16 18 C -0.02 -0.22 9.90 -38.87 -0.38 -0.61 16 19 C -0.14 -1.11 9.42 -39.50 -0.37 -1.48 16 20 C 0.06 0.57 6.58 -82.51 -0.54 0.03 16 21 C 0.33 2.49 5.72 36.01 0.21 2.69 16 22 F -0.18 -1.89 17.05 2.25 0.04 -1.85 16 23 F -0.19 -1.55 16.45 2.25 0.04 -1.52 16 24 N -0.45 -4.85 9.94 -9.14 -0.09 -4.95 16 25 C 0.14 1.35 8.55 -17.14 -0.15 1.21 16 26 C 0.09 1.00 5.39 -3.55 -0.02 0.99 16 27 C -0.12 -1.67 5.25 -26.61 -0.14 -1.81 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.38 9.57 6.84 -40.82 -0.28 9.29 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.04 7.02 -51.93 -0.36 0.68 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.15 0.81 7.59 -52.49 -0.40 0.41 16 39 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.17 1.42 7.03 -52.48 -0.37 1.05 16 41 H 0.08 0.82 4.55 -51.93 -0.24 0.58 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -33.14 368.01 -7.96 -41.10 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.79 Total: 5.09 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.65 Total: -0.51 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.20 Total: -56.84 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.14 -7.96 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205436224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.891 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds