Wall clock time and date at job start Tue Mar 31 2020 23:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99527 * 2 1 4 4 H 1.48504 * 109.46714 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47169 * 299.99874 * 3 2 1 6 6 H 1.48494 * 109.47114 * 60.00568 * 3 2 1 7 7 C 1.38807 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00488 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99850 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00249 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.53045 * 109.45869 * 174.99915 * 11 10 9 13 13 C 1.53196 * 109.31410 * 181.38480 * 12 11 10 14 14 N 1.46927 * 108.89115 * 305.29212 * 13 12 11 15 15 C 1.34777 * 120.63421 * 233.68199 * 14 13 12 16 16 O 1.21554 * 119.99506 * 356.17833 * 15 14 13 17 17 C 1.47835 * 120.00111 * 176.17924 * 15 14 13 18 18 C 1.40025 * 120.55696 * 230.33752 * 17 15 14 19 19 C 1.38362 * 118.28970 * 179.97438 * 18 17 15 20 20 C 1.38348 * 119.29891 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.45646 * 180.02562 * 20 19 18 22 22 F 1.39902 * 109.46937 * 209.99727 * 21 20 19 23 23 F 1.39897 * 109.47128 * 329.99333 * 21 20 19 24 24 N 1.31925 * 121.08195 * 359.97267 * 20 19 18 25 25 C 1.31684 * 121.88140 * 359.77508 * 24 20 19 26 26 C 1.47212 * 118.55714 * 53.54086 * 14 13 12 27 27 C 1.53039 * 109.46023 * 295.06133 * 11 10 9 28 28 H 0.97000 * 120.00665 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00021 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47609 * 59.99541 * 10 9 7 31 31 H 1.08997 * 109.46821 * 299.99533 * 10 9 7 32 32 H 1.08995 * 109.46479 * 55.02390 * 11 10 9 33 33 H 1.08997 * 109.50144 * 61.42988 * 12 11 10 34 34 H 1.09002 * 109.52577 * 301.34775 * 12 11 10 35 35 H 1.08996 * 109.58703 * 65.14304 * 13 12 11 36 36 H 1.08993 * 109.58610 * 185.43564 * 13 12 11 37 37 H 1.07998 * 120.85796 * 0.02562 * 18 17 15 38 38 H 1.08002 * 120.34702 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.47530 * 89.99628 * 21 20 19 40 40 H 1.08004 * 119.72250 * 180.24379 * 25 24 20 41 41 H 1.08998 * 109.53597 * 186.67482 * 26 14 13 42 42 H 1.08997 * 109.67758 * 66.36150 * 26 14 13 43 43 H 1.08997 * 109.50030 * 298.57507 * 27 11 10 44 44 H 1.09007 * 109.49377 * 58.66957 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8196 -0.0012 12 6 1.8254 -6.1413 -0.1270 13 6 0.8250 -7.3010 -0.1621 14 7 -0.0418 -7.2175 1.0213 15 6 -0.1815 -8.2742 1.8462 16 8 0.3570 -9.3303 1.5774 17 6 -0.9895 -8.1487 3.0778 18 6 -0.4721 -8.5567 4.3133 19 6 -1.2687 -8.4177 5.4360 20 6 -2.5389 -7.8856 5.3032 21 6 -3.4094 -7.7320 6.5238 22 9 -4.7538 -7.8509 6.1556 23 9 -3.0904 -8.7285 7.4524 24 7 -3.0001 -7.5096 4.1258 25 6 -2.2787 -7.6173 3.0295 26 6 -0.7506 -5.9548 1.2868 27 6 0.2676 -4.8103 1.3056 28 1 -0.4851 0.8400 0.0004 29 1 0.3557 -2.3881 0.0002 30 1 2.6849 -3.7145 0.8894 31 1 2.6847 -3.7144 -0.8906 32 1 0.3805 -4.7127 -0.8435 33 1 2.4908 -6.2606 0.7280 34 1 2.4111 -6.1382 -1.0462 35 1 0.2182 -7.2329 -1.0649 36 1 1.3637 -8.2485 -0.1544 37 1 0.5235 -8.9686 4.3882 38 1 -0.9031 -8.7220 6.4056 39 1 -3.2401 -6.7520 6.9699 40 1 -2.6896 -7.2949 2.0842 41 1 -1.2515 -6.0143 2.2530 42 1 -1.4872 -5.7757 0.5036 43 1 0.9477 -4.9420 2.1471 44 1 -0.2560 -3.8594 1.4058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205436224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:16 Heat of formation + Delta-G solvation = -106.550611 kcal Electronic energy + Delta-G solvation = -28980.232453 eV Core-core repulsion = 24567.614771 eV Total energy + Delta-G solvation = -4412.617682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.03520 -48.05502 -42.08486 -40.61508 -38.94969 -36.60575 -34.71521 -33.97285 -33.47696 -32.22043 -31.91170 -28.82290 -27.81943 -25.73553 -25.13241 -24.28810 -24.09630 -23.00423 -21.67135 -20.46772 -19.23769 -18.93862 -18.81506 -18.52776 -18.24421 -17.50216 -17.06654 -16.69288 -16.29744 -16.02212 -15.69099 -15.51522 -15.35128 -15.31309 -15.03972 -14.90202 -14.56281 -14.42529 -14.35760 -14.21753 -14.05637 -13.97057 -13.57207 -13.54926 -13.11711 -12.93194 -12.78309 -12.39603 -12.22609 -12.12823 -11.96387 -11.69287 -11.66501 -11.37080 -11.29387 -11.17283 -10.92906 -10.72363 -10.31546 -9.78865 -8.97110 -7.94544 -5.22136 -0.63427 -0.02207 1.37866 1.47995 1.48385 1.58096 1.77921 2.21617 2.45423 2.56487 3.05932 3.17729 3.23507 3.39300 3.56781 3.68453 3.74463 3.76868 3.84634 3.87678 4.01147 4.05195 4.11494 4.28227 4.32223 4.38142 4.44683 4.56852 4.68819 4.69588 4.77751 4.79681 4.86310 4.93986 5.01525 5.08508 5.15939 5.21796 5.25762 5.46642 5.51175 5.54144 6.17619 6.28684 6.49592 6.87287 7.35580 8.11955 8.35713 9.28842 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.002560 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.929479 B =10936.068949 C =12675.713763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.157 3.843 11 C -0.084 4.084 12 C -0.116 4.116 13 C 0.114 3.886 14 N -0.594 5.594 15 C 0.567 3.433 16 O -0.567 6.567 17 C -0.171 4.171 18 C -0.028 4.028 19 C -0.133 4.133 20 C 0.054 3.946 21 C 0.325 3.675 22 F -0.202 7.202 23 F -0.196 7.196 24 N -0.475 5.475 25 C 0.133 3.867 26 C 0.104 3.896 27 C -0.118 4.118 28 H 0.251 0.749 29 H 0.376 0.624 30 H 0.014 0.986 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.171 0.829 40 H 0.183 0.817 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -19.438 10.746 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.030 3.970 11 C -0.103 4.103 12 C -0.154 4.154 13 C -0.007 4.007 14 N -0.326 5.326 15 C 0.355 3.645 16 O -0.447 6.447 17 C -0.177 4.177 18 C -0.054 4.054 19 C -0.152 4.152 20 C -0.085 4.085 21 C 0.271 3.729 22 F -0.183 7.183 23 F -0.177 7.177 24 N -0.183 5.183 25 C -0.026 4.026 26 C -0.018 4.018 27 C -0.156 4.156 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.180 0.820 38 H 0.197 0.803 39 H 0.188 0.812 40 H 0.200 0.800 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.331 -19.572 10.553 22.653 hybrid contribution 0.826 0.813 -0.130 1.166 sum -3.504 -18.759 10.422 21.744 Atomic orbital electron populations 1.69791 1.06392 1.25953 1.59548 1.25488 0.96390 1.00828 1.03809 0.85141 0.78200 0.80147 0.76685 1.19331 1.22066 1.22026 1.19627 0.91386 0.85532 1.41032 0.91065 1.42561 1.05707 1.00998 1.89280 1.20818 0.93899 0.84980 0.97289 1.21206 0.97107 0.93969 0.98050 1.21829 0.97591 0.92540 1.03451 1.21727 0.92452 0.99613 0.86939 1.48209 1.46119 1.12508 1.25715 1.18215 0.80164 0.83371 0.82790 1.90785 1.50245 1.28552 1.75163 1.21062 0.97410 1.03999 0.95180 1.21871 1.00941 0.92545 0.90025 1.22084 0.93254 0.98292 1.01609 1.22219 0.94498 0.97649 0.94098 1.20487 0.75577 0.93038 0.83762 1.93013 1.35847 1.97065 1.92378 1.93016 1.92476 1.65584 1.66611 1.67346 1.36287 1.16256 0.98458 1.23225 0.89308 0.92599 0.97462 1.22203 0.94590 0.81563 1.03446 1.21795 0.98123 0.98098 0.97614 0.93999 0.79094 0.96840 0.96293 0.90870 0.91921 0.89069 0.89479 0.89187 0.82043 0.80281 0.81236 0.80001 0.88668 0.88810 0.92404 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.39 13.06 21.65 0.28 -57.10 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.74 -35.96 5.32 -343.48 -1.83 -37.79 16 10 C 0.16 5.85 5.65 86.38 0.49 6.34 16 11 C -0.08 -2.34 2.19 -10.77 -0.02 -2.36 16 12 C -0.12 -2.52 5.36 30.67 0.16 -2.36 16 13 C 0.11 2.30 6.41 86.36 0.55 2.85 16 14 N -0.59 -12.52 2.98 -821.59 -2.45 -14.97 16 15 C 0.57 13.23 7.27 86.78 0.63 13.86 16 16 O -0.57 -16.77 16.48 -3.89 -0.06 -16.84 16 17 C -0.17 -3.38 5.04 -19.99 -0.10 -3.48 16 18 C -0.03 -0.45 9.90 22.73 0.22 -0.23 16 19 C -0.13 -1.80 9.42 22.33 0.21 -1.59 16 20 C 0.05 0.89 6.58 42.57 0.28 1.17 16 21 C 0.33 4.33 5.72 71.24 0.41 4.73 16 22 F -0.20 -3.92 17.05 44.97 0.77 -3.15 16 23 F -0.20 -2.73 16.45 44.97 0.74 -1.99 16 24 N -0.47 -9.64 9.94 -182.83 -1.82 -11.46 16 25 C 0.13 2.49 8.55 85.02 0.73 3.22 16 26 C 0.10 2.08 5.39 86.31 0.47 2.54 16 27 C -0.12 -3.12 5.25 30.67 0.16 -2.96 16 28 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.38 19.09 6.84 -92.71 -0.63 18.45 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.91 7.02 -2.39 -0.02 1.90 16 37 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.18 1.37 7.59 -2.91 -0.02 1.35 16 39 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.18 2.80 7.03 -2.91 -0.02 2.78 16 41 H 0.10 1.74 4.55 -2.39 -0.01 1.73 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 2.11 7.15 -2.38 -0.02 2.09 16 Total: -1.00 -70.98 368.01 3.56 -67.42 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.41 Total: 22.92 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.50 Total: 5.67 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -5.81 Total: -121.32 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.06 Total: -16.84 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 1.51 Total: -5.15 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.98 3.56 -67.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205436224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.131 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds