Wall clock time and date at job start Tue Mar 31 2020 23:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 120.00246 * 2 1 4 4 H 1.48497 * 109.47055 * 90.00357 * 3 2 1 5 5 H 1.48501 * 109.46990 * 210.00103 * 3 2 1 6 6 H 1.48496 * 109.47308 * 330.00084 * 3 2 1 7 7 C 1.38951 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00325 * 0.02562 * 7 2 1 9 9 N 1.37106 * 119.99623 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99710 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99590 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46695 * 180.02562 * 12 10 9 14 14 C 1.46906 * 110.99797 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.49803 * 34.93106 * 14 13 12 16 16 C 1.53039 * 109.49824 * 154.99785 * 14 13 12 17 17 C 1.53044 * 109.53620 * 181.31389 * 16 14 13 18 18 C 1.53192 * 109.31567 * 298.63529 * 17 16 14 19 19 N 1.46927 * 108.77433 * 54.63319 * 18 17 16 20 20 C 1.34780 * 120.62690 * 126.41047 * 19 18 17 21 21 O 1.21739 * 119.99795 * 173.63808 * 20 19 18 22 22 C 1.46377 * 119.99928 * 353.64270 * 20 19 18 23 23 C 1.33971 * 119.23167 * 57.97091 * 22 20 19 24 24 O 1.35000 * 121.68645 * 180.34701 * 23 22 20 25 25 C 1.43247 * 116.76556 * 342.81520 * 24 23 22 26 26 C 1.53551 * 108.08843 * 45.48886 * 25 24 23 27 27 O 1.36214 * 119.22945 * 237.69343 * 22 20 19 28 28 C 1.46928 * 118.74299 * 306.39461 * 19 18 17 29 29 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00073 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.47160 * 299.99766 * 12 10 9 32 32 H 1.08993 * 109.47657 * 60.00008 * 12 10 9 33 33 H 1.00902 * 111.00274 * 56.04444 * 13 12 10 34 34 H 1.08996 * 109.45975 * 301.34030 * 16 14 13 35 35 H 1.09004 * 109.45900 * 61.30935 * 16 14 13 36 36 H 1.08996 * 109.49703 * 58.59171 * 17 16 14 37 37 H 1.09000 * 109.49373 * 178.68156 * 17 16 14 38 38 H 1.08991 * 109.58601 * 174.42547 * 18 17 16 39 39 H 1.09001 * 109.58446 * 294.71068 * 18 17 16 40 40 H 1.08004 * 119.16160 * 0.31994 * 23 22 20 41 41 H 1.08999 * 109.74065 * 165.13368 * 25 24 23 42 42 H 1.09002 * 109.73964 * 285.79704 * 25 24 23 43 43 H 1.09007 * 109.75158 * 61.47409 * 26 25 24 44 44 H 1.08996 * 109.75833 * 182.16842 * 26 25 24 45 45 H 1.08994 * 109.58387 * 293.81952 * 28 19 18 46 46 H 1.08996 * 109.58612 * 173.39460 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 1.4000 5 1 3.5457 1.4400 -0.7001 6 1 1.4457 2.6526 -0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 1.4687 -2.1386 -0.0014 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3707 -0.0011 11 8 3.4470 -3.4211 -0.0011 12 6 5.5606 -2.3708 -0.0011 13 7 6.0501 -3.7558 -0.0017 14 6 7.5187 -3.7950 -0.0023 15 1 7.9051 -2.9629 0.5861 16 6 7.9946 -5.1159 0.6068 17 6 9.5245 -5.1438 0.6366 18 6 10.0610 -5.0506 -0.7953 19 7 9.4916 -3.8578 -1.4369 20 6 10.2928 -2.9383 -2.0106 21 8 9.8075 -2.0153 -2.6388 22 6 11.7463 -3.0495 -1.8785 23 6 12.3594 -4.1601 -2.3093 24 8 13.6961 -4.3179 -2.2055 25 6 14.4696 -3.1341 -1.9768 26 6 13.7751 -2.3155 -0.8789 27 8 12.4447 -2.0190 -1.3254 28 6 8.0324 -3.6865 -1.4415 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3635 -0.0007 31 1 5.9239 -1.8569 -0.8911 32 1 5.9240 -1.8570 0.8888 33 1 5.6746 -4.2717 -0.7833 34 1 7.6098 -5.2068 1.6225 35 1 7.6281 -5.9467 0.0039 36 1 9.8925 -4.2990 1.2187 37 1 9.8625 -6.0747 1.0919 38 1 11.1477 -4.9705 -0.7738 39 1 9.7712 -5.9414 -1.3527 40 1 11.7691 -4.9495 -2.7507 41 1 15.4738 -3.4074 -1.6526 42 1 14.5257 -2.5480 -2.8941 43 1 13.7374 -2.8943 0.0440 44 1 14.3216 -1.3877 -0.7097 45 1 7.5751 -4.4648 -2.0524 46 1 7.7808 -2.7063 -1.8464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207141674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:49 Heat of formation + Delta-G solvation = -105.220857 kcal Electronic energy + Delta-G solvation = -29700.029722 eV Core-core repulsion = 25398.557217 eV Total energy + Delta-G solvation = -4301.472504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65974 -40.25054 -38.59785 -37.85528 -37.30030 -35.33150 -33.91488 -32.90669 -32.35338 -31.64138 -30.25499 -29.12911 -26.44813 -26.35877 -25.20570 -23.98379 -22.56229 -21.93485 -20.49483 -19.78722 -19.31911 -18.77800 -18.30588 -18.05889 -17.36995 -16.44850 -16.24242 -15.62963 -15.46161 -15.28534 -15.09944 -14.84646 -14.68686 -14.67732 -14.52207 -14.22298 -14.08618 -13.83308 -13.42418 -13.19530 -13.11167 -12.92187 -12.64939 -12.46094 -12.04963 -11.80182 -11.60053 -11.52939 -11.30740 -11.17269 -11.14646 -11.04186 -10.82735 -10.55958 -10.23776 -9.95087 -9.54935 -9.17011 -8.60465 -8.57476 -8.17724 -8.12889 -6.28914 -3.80215 1.13916 1.81171 2.53951 2.82398 3.06830 3.10585 3.16703 3.18424 3.75796 3.78466 4.00096 4.12580 4.13505 4.30688 4.41229 4.52073 4.57405 4.62534 4.65743 4.72242 4.80844 4.91649 4.96044 4.97834 5.16592 5.22426 5.32241 5.38220 5.43652 5.52449 5.57769 5.64115 5.73486 5.84963 5.93843 6.02994 6.06196 6.13801 6.26959 6.85507 6.95014 7.05530 7.51113 7.60271 7.73387 8.16497 8.61808 8.96998 9.44800 9.84537 10.84105 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.002297 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.274638 B =12189.398690 C =13213.665795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.451 3.549 11 O -0.565 6.565 12 C 0.044 3.956 13 N -0.655 5.655 14 C 0.075 3.925 15 H 0.082 0.918 16 C -0.108 4.108 17 C -0.133 4.133 18 C 0.092 3.908 19 N -0.596 5.596 20 C 0.579 3.421 21 O -0.516 6.516 22 C -0.059 4.059 23 C -0.010 4.010 24 O -0.301 6.301 25 C 0.014 3.986 26 C 0.019 3.981 27 O -0.290 6.290 28 C 0.083 3.917 29 H 0.273 0.727 30 H 0.371 0.629 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.352 0.648 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.180 0.820 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.075 0.925 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.029 -8.671 -1.406 34.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.202 1.202 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.236 3.764 11 O -0.447 6.447 12 C -0.089 4.089 13 N -0.286 5.286 14 C -0.036 4.036 15 H 0.100 0.900 16 C -0.146 4.146 17 C -0.171 4.171 18 C -0.030 4.030 19 N -0.331 5.331 20 C 0.365 3.635 21 O -0.391 6.391 22 C -0.108 4.108 23 C -0.076 4.076 24 O -0.214 6.214 25 C -0.062 4.062 26 C -0.057 4.057 27 O -0.204 6.204 28 C -0.041 4.041 29 H 0.084 0.916 30 H 0.204 0.796 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.173 0.827 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.197 0.803 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.140 0.860 45 H 0.093 0.907 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 32.107 -8.795 -1.049 33.306 hybrid contribution 0.943 1.801 -0.888 2.219 sum 33.050 -6.994 -1.937 33.837 Atomic orbital electron populations 1.69622 1.05636 1.27492 1.49364 1.25040 0.95506 0.97999 0.97625 0.86676 0.79847 0.84010 0.78925 1.19593 1.19429 1.20173 1.19428 0.79218 0.96622 1.48054 0.86259 1.42215 1.07561 1.06197 1.66967 1.19664 0.88097 0.84579 0.84044 1.90562 1.69413 1.30917 1.53842 1.21800 0.95172 0.90348 1.01537 1.60268 1.04468 1.12811 1.51069 1.21986 0.88389 0.99220 0.94015 0.90005 1.21512 0.93655 0.96856 1.02607 1.21917 0.96623 1.02910 0.95697 1.22108 0.99508 0.87196 0.94179 1.47928 1.06835 1.22562 1.55772 1.17254 0.84487 0.82172 0.79560 1.90885 1.75788 1.32856 1.39607 1.20329 0.92306 0.91683 1.06447 1.22978 0.83835 0.98732 1.02031 1.86120 1.15570 1.32976 1.86695 1.23714 0.95735 0.86943 0.99782 1.23710 0.82383 1.02808 0.96821 1.86467 1.26743 1.32092 1.75088 1.22649 0.78339 1.03997 0.99126 0.91624 0.79640 0.93457 0.89350 0.82741 0.90307 0.91396 0.91380 0.90135 0.89195 0.90542 0.80284 0.85997 0.90070 0.90189 0.85954 0.90714 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.96 55.50 0.77 -25.28 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.85 27.74 -169.99 -4.71 15.14 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.27 -5.61 6.52 56.52 0.37 -5.24 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.34 5.09 -10.96 -0.06 -14.40 16 10 C 0.45 10.34 7.82 -10.98 -0.09 10.25 16 11 O -0.57 -15.21 15.78 5.55 0.09 -15.12 16 12 C 0.04 0.74 5.97 -4.98 -0.03 0.71 16 13 N -0.65 -9.81 5.88 -107.86 -0.63 -10.45 16 14 C 0.08 0.87 2.62 -67.59 -0.18 0.69 16 15 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 16 C -0.11 -1.00 5.49 -26.69 -0.15 -1.15 16 17 C -0.13 -0.92 6.08 -26.61 -0.16 -1.08 16 18 C 0.09 0.63 5.58 -3.71 -0.02 0.61 16 19 N -0.60 -6.05 2.97 -174.42 -0.52 -6.57 16 20 C 0.58 7.32 7.27 -12.98 -0.09 7.23 16 21 O -0.52 -8.75 16.55 5.12 0.08 -8.67 16 22 C -0.06 -0.61 5.61 -37.81 -0.21 -0.82 16 23 C -0.01 -0.08 8.38 29.23 0.25 0.16 16 24 O -0.30 -2.15 10.47 -30.83 -0.32 -2.47 16 25 C 0.01 0.06 7.29 37.44 0.27 0.34 16 26 C 0.02 0.10 7.32 37.44 0.27 0.38 16 27 O -0.29 -3.07 10.48 -36.88 -0.39 -3.46 16 28 C 0.08 0.93 5.67 -3.71 -0.02 0.91 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.37 8.00 5.76 -40.82 -0.24 7.77 16 31 H 0.05 0.73 7.57 -51.93 -0.39 0.34 16 32 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 33 H 0.35 5.41 8.11 -39.29 -0.32 5.09 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.53 4.81 -51.93 -0.25 0.28 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.18 1.03 7.39 -52.48 -0.39 0.64 16 41 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 46 H 0.09 1.27 6.53 -51.93 -0.34 0.93 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -37.08 373.44 -6.99 -44.07 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.52 Total: 11.18 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -0.40 Total: 10.40 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.43 Total: -56.70 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.54 Total: -29.72 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.71 Total: 15.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.08 -6.99 -44.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207141674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.152 kcal (2) G-P(sol) polarization free energy of solvation -37.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds