Wall clock time and date at job start Tue Mar 31 2020 23:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 120.00246 * 2 1 4 4 H 1.48497 * 109.47055 * 90.00357 * 3 2 1 5 5 H 1.48501 * 109.46990 * 210.00103 * 3 2 1 6 6 H 1.48496 * 109.47308 * 330.00084 * 3 2 1 7 7 C 1.38951 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00325 * 0.02562 * 7 2 1 9 9 N 1.37106 * 119.99623 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99710 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99590 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46695 * 180.02562 * 12 10 9 14 14 C 1.46906 * 110.99797 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.49803 * 34.93106 * 14 13 12 16 16 C 1.53039 * 109.49824 * 154.99785 * 14 13 12 17 17 C 1.53044 * 109.53620 * 181.31389 * 16 14 13 18 18 C 1.53192 * 109.31567 * 298.63529 * 17 16 14 19 19 N 1.46927 * 108.77433 * 54.63319 * 18 17 16 20 20 C 1.34780 * 120.62690 * 126.41047 * 19 18 17 21 21 O 1.21739 * 119.99795 * 173.63808 * 20 19 18 22 22 C 1.46377 * 119.99928 * 353.64270 * 20 19 18 23 23 C 1.33971 * 119.23167 * 57.97091 * 22 20 19 24 24 O 1.35000 * 121.68645 * 180.34701 * 23 22 20 25 25 C 1.43247 * 116.76556 * 342.81520 * 24 23 22 26 26 C 1.53551 * 108.08843 * 45.48886 * 25 24 23 27 27 O 1.36214 * 119.22945 * 237.69343 * 22 20 19 28 28 C 1.46928 * 118.74299 * 306.39461 * 19 18 17 29 29 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00073 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.47160 * 299.99766 * 12 10 9 32 32 H 1.08993 * 109.47657 * 60.00008 * 12 10 9 33 33 H 1.00902 * 111.00274 * 56.04444 * 13 12 10 34 34 H 1.08996 * 109.45975 * 301.34030 * 16 14 13 35 35 H 1.09004 * 109.45900 * 61.30935 * 16 14 13 36 36 H 1.08996 * 109.49703 * 58.59171 * 17 16 14 37 37 H 1.09000 * 109.49373 * 178.68156 * 17 16 14 38 38 H 1.08991 * 109.58601 * 174.42547 * 18 17 16 39 39 H 1.09001 * 109.58446 * 294.71068 * 18 17 16 40 40 H 1.08004 * 119.16160 * 0.31994 * 23 22 20 41 41 H 1.08999 * 109.74065 * 165.13368 * 25 24 23 42 42 H 1.09002 * 109.73964 * 285.79704 * 25 24 23 43 43 H 1.09007 * 109.75158 * 61.47409 * 26 25 24 44 44 H 1.08996 * 109.75833 * 182.16842 * 26 25 24 45 45 H 1.08994 * 109.58387 * 293.81952 * 28 19 18 46 46 H 1.08996 * 109.58612 * 173.39460 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 1.4000 5 1 3.5457 1.4400 -0.7001 6 1 1.4457 2.6526 -0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 1.4687 -2.1386 -0.0014 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3707 -0.0011 11 8 3.4470 -3.4211 -0.0011 12 6 5.5606 -2.3708 -0.0011 13 7 6.0501 -3.7558 -0.0017 14 6 7.5187 -3.7950 -0.0023 15 1 7.9051 -2.9629 0.5861 16 6 7.9946 -5.1159 0.6068 17 6 9.5245 -5.1438 0.6366 18 6 10.0610 -5.0506 -0.7953 19 7 9.4916 -3.8578 -1.4369 20 6 10.2928 -2.9383 -2.0106 21 8 9.8075 -2.0153 -2.6388 22 6 11.7463 -3.0495 -1.8785 23 6 12.3594 -4.1601 -2.3093 24 8 13.6961 -4.3179 -2.2055 25 6 14.4696 -3.1341 -1.9768 26 6 13.7751 -2.3155 -0.8789 27 8 12.4447 -2.0190 -1.3254 28 6 8.0324 -3.6865 -1.4415 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3635 -0.0007 31 1 5.9239 -1.8569 -0.8911 32 1 5.9240 -1.8570 0.8888 33 1 5.6746 -4.2717 -0.7833 34 1 7.6098 -5.2068 1.6225 35 1 7.6281 -5.9467 0.0039 36 1 9.8925 -4.2990 1.2187 37 1 9.8625 -6.0747 1.0919 38 1 11.1477 -4.9705 -0.7738 39 1 9.7712 -5.9414 -1.3527 40 1 11.7691 -4.9495 -2.7507 41 1 15.4738 -3.4074 -1.6526 42 1 14.5257 -2.5480 -2.8941 43 1 13.7374 -2.8943 0.0440 44 1 14.3216 -1.3877 -0.7097 45 1 7.5751 -4.4648 -2.0524 46 1 7.7808 -2.7063 -1.8464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207141674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:48 Heat of formation + Delta-G solvation = -136.145925 kcal Electronic energy + Delta-G solvation = -29701.370733 eV Core-core repulsion = 25398.557217 eV Total energy + Delta-G solvation = -4302.813516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28721 -41.04934 -40.30541 -38.88937 -37.95055 -36.50693 -35.86650 -33.83342 -33.65152 -32.97975 -31.14402 -29.82899 -27.97545 -27.07275 -25.79545 -25.65752 -23.43974 -22.69435 -21.46496 -21.11212 -20.43818 -20.18986 -19.33901 -18.77591 -18.01683 -17.83111 -17.32599 -16.92501 -16.56486 -16.23298 -16.10078 -15.91729 -15.72198 -15.42657 -15.24645 -15.22284 -15.13392 -14.87571 -14.64208 -14.43222 -14.29332 -14.03455 -13.93142 -13.67105 -13.29090 -13.15287 -12.91172 -12.43939 -12.37717 -12.06945 -12.01787 -11.93790 -11.89347 -11.65400 -11.61121 -11.54115 -11.08391 -10.47540 -10.27180 -10.04449 -9.32660 -9.21380 -8.43524 -6.04003 0.48142 1.05054 1.29049 1.32647 1.41588 1.80825 1.91383 2.20247 2.29000 2.53715 2.69457 3.12346 3.32157 3.41541 3.47734 3.75205 3.86839 3.91174 3.98432 4.00605 4.04258 4.12368 4.22808 4.24099 4.30299 4.44442 4.47316 4.49841 4.63706 4.65509 4.70338 4.76191 4.83757 4.91844 5.08930 5.24710 5.30599 5.41027 5.51007 5.74613 5.87021 5.98180 6.14759 6.30754 6.32758 6.56613 6.85048 6.87143 7.36568 7.91734 8.73874 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.002297 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.274638 B =12189.398690 C =13213.665795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.237 1.237 6 H -0.273 1.273 7 C -0.328 4.328 8 H 0.059 0.941 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.610 6.610 12 C 0.058 3.942 13 N -0.666 5.666 14 C 0.082 3.918 15 H 0.077 0.923 16 C -0.104 4.104 17 C -0.124 4.124 18 C 0.089 3.911 19 N -0.588 5.588 20 C 0.575 3.425 21 O -0.575 6.575 22 C -0.089 4.089 23 C 0.020 3.980 24 O -0.305 6.305 25 C 0.010 3.990 26 C 0.013 3.987 27 O -0.324 6.324 28 C 0.086 3.914 29 H 0.280 0.720 30 H 0.388 0.612 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.349 0.651 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.200 0.800 41 H 0.157 0.843 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.143 0.857 45 H 0.085 0.915 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.324 -8.718 -0.996 38.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.212 4.212 3 Si 0.782 3.218 4 H -0.180 1.180 5 H -0.161 1.161 6 H -0.198 1.198 7 C -0.457 4.457 8 H 0.077 0.923 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.494 6.494 12 C -0.074 4.074 13 N -0.297 5.297 14 C -0.029 4.029 15 H 0.095 0.905 16 C -0.143 4.143 17 C -0.163 4.163 18 C -0.032 4.032 19 N -0.321 5.321 20 C 0.363 3.637 21 O -0.454 6.454 22 C -0.137 4.137 23 C -0.046 4.046 24 O -0.217 6.217 25 C -0.064 4.064 26 C -0.062 4.062 27 O -0.240 6.240 28 C -0.038 4.038 29 H 0.089 0.911 30 H 0.224 0.776 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.217 0.783 41 H 0.175 0.825 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.161 0.839 45 H 0.103 0.897 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 36.459 -8.892 -0.610 37.532 hybrid contribution -0.353 1.640 -0.997 1.951 sum 36.106 -7.252 -1.607 36.862 Atomic orbital electron populations 1.69792 1.07967 1.29229 1.50198 1.26067 0.96475 1.02538 0.96134 0.85406 0.79331 0.77092 0.79984 1.18006 1.16110 1.19821 1.19018 0.81336 0.95024 1.50300 0.92311 1.42067 1.05969 1.07590 1.67708 1.20830 0.90679 0.83376 0.81244 1.90538 1.71238 1.32568 1.55066 1.21688 0.89995 0.92197 1.03518 1.60322 1.06718 1.11544 1.51142 1.22010 0.86026 1.00600 0.94220 0.90462 1.21497 0.95458 0.95431 1.01877 1.21886 0.94482 1.04120 0.95793 1.22399 1.00257 0.86394 0.94131 1.48009 1.06143 1.23068 1.54904 1.17711 0.85751 0.81533 0.78730 1.90841 1.77003 1.35251 1.42350 1.20031 0.91209 0.92962 1.09509 1.23249 0.84290 0.97844 0.99209 1.86128 1.15185 1.34281 1.86110 1.23992 0.96761 0.86114 0.99555 1.24035 0.80536 1.04331 0.97290 1.86390 1.28861 1.33071 1.75668 1.22488 0.79467 1.02998 0.98889 0.91091 0.77633 0.91462 0.87049 0.83176 0.91132 0.90789 0.91995 0.87366 0.87811 0.88220 0.78341 0.82542 0.90363 0.89131 0.83941 0.89692 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.96 21.66 0.30 -56.68 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.96 40.38 27.74 68.60 1.90 42.29 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 5 H -0.24 -8.70 6.52 99.48 0.65 -8.05 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.33 -19.61 10.16 84.04 0.85 -18.76 16 8 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 9 N -0.59 -28.98 5.09 -306.98 -1.56 -30.54 16 10 C 0.45 20.97 7.82 87.66 0.69 21.66 16 11 O -0.61 -34.10 15.78 -3.06 -0.05 -34.15 16 12 C 0.06 1.91 5.97 85.56 0.51 2.42 16 13 N -0.67 -19.50 5.88 -495.16 -2.91 -22.41 16 14 C 0.08 1.78 2.62 44.99 0.12 1.90 16 15 H 0.08 1.77 7.80 -2.39 -0.02 1.75 16 16 C -0.10 -1.70 5.49 30.62 0.17 -1.53 16 17 C -0.12 -1.32 6.08 30.67 0.19 -1.13 16 18 C 0.09 0.93 5.58 86.36 0.48 1.41 16 19 N -0.59 -11.11 2.97 -823.93 -2.45 -13.56 16 20 C 0.57 14.33 7.27 86.36 0.63 14.96 16 21 O -0.57 -20.10 16.55 -4.44 -0.07 -20.17 16 22 C -0.09 -1.73 5.61 23.42 0.13 -1.60 16 23 C 0.02 0.26 8.38 66.85 0.56 0.82 16 24 O -0.30 -3.39 10.47 -69.22 -0.72 -4.11 16 25 C 0.01 0.07 7.29 72.17 0.53 0.59 16 26 C 0.01 0.11 7.32 72.17 0.53 0.64 16 27 O -0.32 -6.61 10.48 -80.26 -0.84 -7.45 16 28 C 0.09 1.87 5.67 86.36 0.49 2.36 16 29 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.39 16.11 5.76 -92.71 -0.53 15.58 16 31 H 0.07 1.98 7.57 -2.38 -0.02 1.96 16 32 H 0.11 3.18 8.06 -2.39 -0.02 3.16 16 33 H 0.35 10.65 8.11 -89.69 -0.73 9.93 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.10 0.85 4.81 -2.39 -0.01 0.84 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.20 1.63 7.39 -2.91 -0.02 1.60 16 41 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 1.67 8.04 -2.39 -0.02 1.65 16 46 H 0.07 1.87 6.53 -2.39 -0.02 1.86 16 Total: -1.00 -87.84 373.44 -0.36 -88.20 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.29 Total: 35.14 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 6.33 Total: 23.45 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -6.62 Total: -123.19 kcal Atomic # 8 Polarization: -64.20 SS G_CDS: -1.69 Total: -65.89 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.90 Total: 42.29 kcal Total: -87.84 -0.36 -88.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207141674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.947 kcal (2) G-P(sol) polarization free energy of solvation -87.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds