Wall clock time and date at job start Tue Mar 31 2020 22:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28599 * 124.62027 * 2 1 4 4 C 1.31381 * 108.72200 * 179.97438 * 3 2 1 5 5 C 1.39678 * 105.89572 * 0.02562 * 4 3 2 6 6 C 1.50697 * 127.04674 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47368 * 94.99715 * 6 5 4 8 8 C 1.46906 * 111.00211 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.49463 * 35.06152 * 8 7 6 10 10 C 1.53038 * 109.52465 * 155.13998 * 8 7 6 11 11 C 1.53041 * 109.53768 * 181.33192 * 10 8 7 12 12 C 1.53187 * 109.31211 * 298.63806 * 11 10 8 13 13 N 1.46924 * 108.77642 * 54.63373 * 12 11 10 14 14 C 1.34787 * 120.63033 * 126.66473 * 13 12 11 15 15 O 1.21276 * 119.99928 * 179.72235 * 14 13 12 16 16 C 1.50703 * 119.99759 * 359.72119 * 14 13 12 17 17 S 1.80999 * 109.46877 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99936 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99895 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47117 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47759 * 119.99851 * 22 20 18 25 25 H 1.48506 * 109.47059 * 240.00031 * 22 20 18 26 26 C 1.46926 * 118.73991 * 306.38981 * 13 12 11 27 27 N 1.28596 * 124.61987 * 180.24695 * 2 1 3 28 28 H 1.09000 * 109.47074 * 90.02242 * 1 2 3 29 29 H 1.08996 * 109.47205 * 210.02498 * 1 2 3 30 30 H 1.09001 * 109.47345 * 330.02586 * 1 2 3 31 31 H 1.07995 * 127.05279 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47563 * 334.98973 * 6 5 4 33 33 H 1.09006 * 109.46983 * 214.99312 * 6 5 4 34 34 H 1.00901 * 110.99700 * 303.94993 * 7 6 5 35 35 H 1.09003 * 109.46482 * 301.35524 * 10 8 7 36 36 H 1.09007 * 109.46056 * 61.33023 * 10 8 7 37 37 H 1.08999 * 109.49559 * 58.59056 * 11 10 8 38 38 H 1.09004 * 109.49619 * 178.65630 * 11 10 8 39 39 H 1.09003 * 109.59079 * 294.84522 * 12 11 10 40 40 H 1.09002 * 109.58636 * 174.41916 * 12 11 10 41 41 H 1.08998 * 109.47136 * 299.99814 * 16 14 13 42 42 H 1.09001 * 109.47288 * 59.99840 * 16 14 13 43 43 H 0.97005 * 119.99936 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.58798 * 173.39259 * 26 13 12 45 45 H 1.08996 * 109.58371 * 293.82241 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4592 0.6984 0.0006 5 6 3.4591 -0.6984 0.0003 6 6 4.6618 -1.6063 0.0002 7 7 4.9800 -1.9979 1.3798 8 6 6.1496 -2.8859 1.4187 9 1 6.8557 -2.5917 0.6422 10 6 6.8245 -2.7831 2.7883 11 6 8.0621 -3.6829 2.8179 12 6 7.6362 -5.1377 2.5967 13 7 6.8604 -5.2192 1.3516 14 6 7.2017 -6.0955 0.3860 15 8 6.5503 -6.1566 -0.6351 16 6 8.3927 -6.9992 0.5753 17 16 8.5902 -8.0508 -0.8846 18 6 10.0116 -8.9753 -0.4057 19 1 10.4764 -8.7937 0.5521 20 6 10.5333 -9.9377 -1.2590 21 7 9.9659 -10.1601 -2.4257 22 14 12.0399 -10.9184 -0.7511 23 1 12.4837 -10.4812 0.5970 24 1 11.7013 -12.3638 -0.7166 25 1 13.1329 -10.6893 -1.7300 26 6 5.7020 -4.3316 1.1816 27 7 2.1956 -1.0583 -0.0046 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.3211 1.3491 0.0011 32 1 5.5130 -1.0820 -0.4341 33 1 4.4446 -2.4971 -0.5893 34 1 5.1222 -1.1864 1.9623 35 1 7.1220 -1.7503 2.9701 36 1 6.1259 -3.1013 3.5623 37 1 8.7502 -3.3812 2.0282 38 1 8.5557 -3.5910 3.7854 39 1 7.0208 -5.4695 3.4330 40 1 8.5209 -5.7695 2.5180 41 1 9.2895 -6.3948 0.7112 42 1 8.2387 -7.6238 1.4553 43 1 10.3303 -10.8329 -3.0219 44 1 5.3105 -4.4316 0.1692 45 1 4.9290 -4.5977 1.9025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207410563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:28 Heat of formation + Delta-G solvation = 79.543433 kcal Electronic energy + Delta-G solvation = -26278.868459 eV Core-core repulsion = 22460.453557 eV Total energy + Delta-G solvation = -3818.414901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.81481 -39.98548 -37.79961 -35.85765 -33.99757 -32.86412 -32.42123 -32.21762 -30.71073 -29.14315 -27.73458 -25.64177 -25.36039 -25.04733 -22.69851 -22.34596 -21.19944 -20.78649 -19.00182 -17.68000 -17.54827 -17.12023 -16.74063 -16.12312 -15.65007 -15.31449 -15.09996 -15.01032 -14.79580 -14.58953 -14.10219 -13.83532 -13.69746 -13.50022 -13.24936 -13.19788 -13.14127 -12.80968 -12.63895 -12.37407 -11.93362 -11.78250 -11.34937 -11.17110 -11.10402 -11.06397 -11.02892 -10.99172 -10.75785 -10.65262 -10.48969 -9.77945 -9.53055 -9.31744 -9.06468 -8.83351 -8.41333 -8.19918 -6.48455 -6.20619 -3.90907 1.53019 2.02029 2.08735 2.94697 3.09313 3.22111 3.26755 3.31672 3.59416 3.74211 3.99455 4.21184 4.45423 4.51216 4.60973 4.65521 4.68189 4.80779 4.86188 4.88164 4.98394 5.04351 5.13948 5.14566 5.18668 5.32181 5.42485 5.45698 5.58569 5.69244 5.71776 5.76549 5.79924 5.85155 5.87259 5.91353 6.02054 6.09833 6.13886 6.38543 6.52945 6.82255 7.05812 7.60165 7.62073 8.05398 8.36426 8.60719 9.24746 10.86820 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.001983 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.945420 B =14115.924605 C =14978.093220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.160 5.160 3 N -0.294 5.294 4 C -0.023 4.023 5 C 0.007 3.993 6 C 0.146 3.854 7 N -0.677 5.677 8 C 0.076 3.924 9 H 0.053 0.947 10 C -0.119 4.119 11 C -0.133 4.133 12 C 0.106 3.894 13 N -0.620 5.620 14 C 0.535 3.465 15 O -0.517 6.517 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.125 3.875 27 N -0.266 5.266 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.195 0.805 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.344 0.656 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.091 0.909 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.639 22.892 11.690 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.061 5.061 3 N -0.135 5.135 4 C -0.206 4.206 5 C -0.157 4.157 6 C 0.015 3.985 7 N -0.310 5.310 8 C -0.035 4.035 9 H 0.071 0.929 10 C -0.157 4.157 11 C -0.172 4.172 12 C -0.017 4.017 13 N -0.357 5.357 14 C 0.323 3.677 15 O -0.391 6.391 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.002 3.998 27 N -0.108 5.108 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.212 0.788 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.163 0.837 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.493 22.183 9.990 28.843 hybrid contribution 3.293 0.203 1.372 3.574 sum -12.200 22.385 11.362 27.911 Atomic orbital electron populations 1.22123 0.70251 1.05848 1.04962 1.47966 1.08934 0.99407 1.49804 1.74028 1.03926 1.16261 1.19242 1.24655 0.94510 0.94747 1.06647 1.23010 0.92629 0.93588 1.06430 1.20164 0.90417 0.97022 0.90880 1.60272 1.39569 1.21563 1.09548 1.21872 0.90275 0.93759 0.97556 0.92897 1.21689 0.97316 0.99877 0.96788 1.21905 0.97576 0.95001 1.02678 1.21730 0.96506 0.96961 0.86511 1.48087 1.30820 1.38660 1.18097 1.20327 0.85299 0.79749 0.82333 1.90690 1.53144 1.67938 1.27317 1.23551 0.97800 1.01286 1.07414 1.85419 1.38808 1.42147 1.17146 1.22901 1.14728 1.24148 1.06455 0.90896 1.24995 0.97705 0.96397 0.94537 1.70032 1.39601 1.32266 1.08356 0.86121 0.81355 0.79427 0.78606 1.19617 1.20578 1.20595 1.21418 0.87551 0.87119 1.03723 1.74094 1.03675 1.15185 1.17895 0.89273 0.87810 0.88015 0.78787 0.92520 0.88756 0.83743 0.91803 0.90798 0.91232 0.90372 0.91414 0.89146 0.89302 0.89277 0.92257 0.89099 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.52 11.57 59.85 0.69 1.22 16 2 N -0.16 -1.57 4.35 -16.64 -0.07 -1.64 16 3 N -0.29 -3.01 12.05 30.67 0.37 -2.64 16 4 C -0.02 -0.20 12.16 -17.21 -0.21 -0.41 16 5 C 0.01 0.07 6.87 -82.25 -0.56 -0.49 16 6 C 0.15 1.35 6.07 -4.98 -0.03 1.32 16 7 N -0.68 -6.02 6.30 -107.87 -0.68 -6.70 16 8 C 0.08 0.74 2.64 -67.59 -0.18 0.56 16 9 H 0.05 0.56 7.80 -51.93 -0.41 0.16 16 10 C -0.12 -0.92 5.17 -26.69 -0.14 -1.06 16 11 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 12 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 13 N -0.62 -8.90 2.97 -172.77 -0.51 -9.41 16 14 C 0.53 10.31 7.72 -10.98 -0.08 10.22 16 15 O -0.52 -11.99 15.28 5.56 0.08 -11.90 16 16 C -0.15 -3.06 4.50 36.01 0.16 -2.89 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.13 1.62 5.90 -3.71 -0.02 1.60 16 27 N -0.27 -3.09 12.05 33.71 0.41 -2.68 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 33 H 0.09 1.04 7.56 -51.93 -0.39 0.65 16 34 H 0.34 2.53 8.33 -39.29 -0.33 2.20 16 35 H 0.06 0.41 8.10 -51.93 -0.42 -0.02 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.00 5.94 -51.93 -0.31 0.69 16 41 H 0.09 1.66 7.70 -51.92 -0.40 1.27 16 42 H 0.09 1.69 7.94 -51.92 -0.41 1.27 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.09 1.39 6.48 -51.93 -0.34 1.06 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -37.21 384.87 -8.24 -45.44 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.77 Total: -0.21 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.36 Total: -3.03 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.24 Total: -48.56 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.21 -8.24 -45.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.987 kcal (2) G-P(sol) polarization free energy of solvation -37.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds