Wall clock time and date at job start Tue Mar 31 2020 22:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28599 * 124.62027 * 2 1 4 4 C 1.31381 * 108.72200 * 179.97438 * 3 2 1 5 5 C 1.39678 * 105.89572 * 0.02562 * 4 3 2 6 6 C 1.50697 * 127.04674 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47368 * 94.99715 * 6 5 4 8 8 C 1.46906 * 111.00211 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.49463 * 35.06152 * 8 7 6 10 10 C 1.53038 * 109.52465 * 155.13998 * 8 7 6 11 11 C 1.53041 * 109.53768 * 181.33192 * 10 8 7 12 12 C 1.53187 * 109.31211 * 298.63806 * 11 10 8 13 13 N 1.46924 * 108.77642 * 54.63373 * 12 11 10 14 14 C 1.34787 * 120.63033 * 126.66473 * 13 12 11 15 15 O 1.21276 * 119.99928 * 179.72235 * 14 13 12 16 16 C 1.50703 * 119.99759 * 359.72119 * 14 13 12 17 17 S 1.80999 * 109.46877 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99936 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99895 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47117 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47759 * 119.99851 * 22 20 18 25 25 H 1.48506 * 109.47059 * 240.00031 * 22 20 18 26 26 C 1.46926 * 118.73991 * 306.38981 * 13 12 11 27 27 N 1.28596 * 124.61987 * 180.24695 * 2 1 3 28 28 H 1.09000 * 109.47074 * 90.02242 * 1 2 3 29 29 H 1.08996 * 109.47205 * 210.02498 * 1 2 3 30 30 H 1.09001 * 109.47345 * 330.02586 * 1 2 3 31 31 H 1.07995 * 127.05279 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47563 * 334.98973 * 6 5 4 33 33 H 1.09006 * 109.46983 * 214.99312 * 6 5 4 34 34 H 1.00901 * 110.99700 * 303.94993 * 7 6 5 35 35 H 1.09003 * 109.46482 * 301.35524 * 10 8 7 36 36 H 1.09007 * 109.46056 * 61.33023 * 10 8 7 37 37 H 1.08999 * 109.49559 * 58.59056 * 11 10 8 38 38 H 1.09004 * 109.49619 * 178.65630 * 11 10 8 39 39 H 1.09003 * 109.59079 * 294.84522 * 12 11 10 40 40 H 1.09002 * 109.58636 * 174.41916 * 12 11 10 41 41 H 1.08998 * 109.47136 * 299.99814 * 16 14 13 42 42 H 1.09001 * 109.47288 * 59.99840 * 16 14 13 43 43 H 0.97005 * 119.99936 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.58798 * 173.39259 * 26 13 12 45 45 H 1.08996 * 109.58371 * 293.82241 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4592 0.6984 0.0006 5 6 3.4591 -0.6984 0.0003 6 6 4.6618 -1.6063 0.0002 7 7 4.9800 -1.9979 1.3798 8 6 6.1496 -2.8859 1.4187 9 1 6.8557 -2.5917 0.6422 10 6 6.8245 -2.7831 2.7883 11 6 8.0621 -3.6829 2.8179 12 6 7.6362 -5.1377 2.5967 13 7 6.8604 -5.2192 1.3516 14 6 7.2017 -6.0955 0.3860 15 8 6.5503 -6.1566 -0.6351 16 6 8.3927 -6.9992 0.5753 17 16 8.5902 -8.0508 -0.8846 18 6 10.0116 -8.9753 -0.4057 19 1 10.4764 -8.7937 0.5521 20 6 10.5333 -9.9377 -1.2590 21 7 9.9659 -10.1601 -2.4257 22 14 12.0399 -10.9184 -0.7511 23 1 12.4837 -10.4812 0.5970 24 1 11.7013 -12.3638 -0.7166 25 1 13.1329 -10.6893 -1.7300 26 6 5.7020 -4.3316 1.1816 27 7 2.1956 -1.0583 -0.0046 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.3211 1.3491 0.0011 32 1 5.5130 -1.0820 -0.4341 33 1 4.4446 -2.4971 -0.5893 34 1 5.1222 -1.1864 1.9623 35 1 7.1220 -1.7503 2.9701 36 1 6.1259 -3.1013 3.5623 37 1 8.7502 -3.3812 2.0282 38 1 8.5557 -3.5910 3.7854 39 1 7.0208 -5.4695 3.4330 40 1 8.5209 -5.7695 2.5180 41 1 9.2895 -6.3948 0.7112 42 1 8.2387 -7.6238 1.4553 43 1 10.3303 -10.8329 -3.0219 44 1 5.3105 -4.4316 0.1692 45 1 4.9290 -4.5977 1.9025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207410563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:27 Heat of formation + Delta-G solvation = 51.356037 kcal Electronic energy + Delta-G solvation = -26280.090756 eV Core-core repulsion = 22460.453557 eV Total energy + Delta-G solvation = -3819.637199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.51930 -41.20327 -38.93903 -36.79343 -34.72820 -34.57826 -33.65483 -33.10384 -31.81220 -30.30805 -28.48280 -27.68056 -26.32534 -26.00876 -23.45167 -23.08517 -22.05619 -21.70009 -20.33126 -19.47082 -18.22605 -18.15466 -17.79186 -17.12952 -16.87730 -16.77881 -16.49696 -15.98722 -15.76580 -15.62821 -15.47101 -15.01122 -14.57510 -14.46895 -14.30715 -14.09591 -14.02035 -13.73212 -13.60467 -13.42279 -13.29210 -13.14412 -12.90967 -12.65071 -12.58071 -12.12401 -11.91606 -11.89280 -11.78902 -11.68258 -11.47773 -11.26564 -11.15315 -10.87326 -10.24633 -10.18698 -9.77238 -9.40874 -8.66895 -8.33955 -6.12418 0.80403 1.25706 1.36752 1.42266 1.47042 1.50998 1.57854 1.58385 2.09589 2.27913 3.00250 3.07282 3.25517 3.27252 3.63440 3.78102 3.91048 3.93514 4.06367 4.15936 4.17087 4.26804 4.29257 4.31514 4.33564 4.45148 4.46597 4.56328 4.57996 4.65667 4.70846 4.83907 4.90314 5.00019 5.10394 5.12750 5.15438 5.21610 5.36856 5.42808 5.52553 5.75727 5.94835 6.20789 6.31698 6.44172 7.07228 7.15381 7.34087 8.75560 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.001983 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.945420 B =14115.924605 C =14978.093220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.163 5.163 3 N -0.310 5.310 4 C -0.020 4.020 5 C -0.004 4.004 6 C 0.151 3.849 7 N -0.677 5.677 8 C 0.087 3.913 9 H 0.044 0.956 10 C -0.112 4.112 11 C -0.126 4.126 12 C 0.095 3.905 13 N -0.605 5.605 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.121 4.121 17 S -0.155 6.155 18 C -0.543 4.543 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.124 3.876 27 N -0.299 5.299 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.226 0.774 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.358 0.642 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.058 0.942 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 24.551 14.755 30.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.065 5.065 3 N -0.151 5.151 4 C -0.202 4.202 5 C -0.167 4.167 6 C 0.020 3.980 7 N -0.311 5.311 8 C -0.024 4.024 9 H 0.062 0.938 10 C -0.150 4.150 11 C -0.165 4.165 12 C -0.027 4.027 13 N -0.340 5.340 14 C 0.319 3.681 15 O -0.448 6.448 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.691 4.691 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.178 1.178 24 H -0.200 1.200 25 H -0.200 1.200 26 C 0.001 3.999 27 N -0.143 5.143 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.242 0.758 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.179 0.821 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.190 23.894 13.120 30.731 hybrid contribution 2.748 -0.216 0.486 2.799 sum -11.441 23.678 13.606 29.609 Atomic orbital electron populations 1.22513 0.68208 1.07271 1.06275 1.48413 1.10135 0.98799 1.49112 1.74011 1.04588 1.16673 1.19866 1.25152 0.95064 0.94514 1.05492 1.23156 0.92391 0.94372 1.06750 1.20077 0.90942 0.96028 0.90927 1.60132 1.39193 1.22205 1.09584 1.21700 0.90259 0.91459 0.98966 0.93797 1.21676 0.96890 1.01340 0.95064 1.21893 0.97735 0.92875 1.03987 1.22123 0.96376 0.99205 0.85000 1.48088 1.30891 1.36936 1.18059 1.20182 0.84791 0.80428 0.82709 1.90673 1.54687 1.69723 1.29692 1.23357 0.99387 1.00552 1.03928 1.85635 1.39722 1.44652 1.22805 1.23228 1.14610 1.24319 1.06953 0.89766 1.26155 1.01274 0.97527 0.94331 1.70201 1.41631 1.33196 1.09838 0.84886 0.76603 0.77427 0.78904 1.17821 1.20018 1.19955 1.21501 0.87163 0.89185 1.02031 1.74047 1.04685 1.16498 1.19036 0.88019 0.86959 0.86087 0.75761 0.90677 0.91445 0.82143 0.89284 0.90112 0.92056 0.87371 0.89305 0.89246 0.87278 0.87448 0.92033 0.92370 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 11.57 127.77 1.48 2.33 16 2 N -0.16 -3.09 4.35 -206.56 -0.90 -3.99 16 3 N -0.31 -6.04 12.05 -56.87 -0.69 -6.73 16 4 C -0.02 -0.33 12.16 85.11 1.03 0.70 16 5 C 0.00 -0.08 6.87 42.97 0.30 0.22 16 6 C 0.15 2.77 6.07 85.56 0.52 3.29 16 7 N -0.68 -11.11 6.30 -495.18 -3.12 -14.23 16 8 C 0.09 1.55 2.64 44.99 0.12 1.67 16 9 H 0.04 0.89 7.80 -2.39 -0.02 0.87 16 10 C -0.11 -1.33 5.17 30.62 0.16 -1.17 16 11 C -0.13 -1.64 6.08 30.67 0.19 -1.46 16 12 C 0.09 1.77 6.34 86.36 0.55 2.32 16 13 N -0.61 -16.95 2.97 -818.91 -2.43 -19.39 16 14 C 0.53 20.84 7.72 87.66 0.68 21.51 16 15 O -0.57 -27.85 15.28 -3.02 -0.05 -27.90 16 16 C -0.12 -4.93 4.50 71.24 0.32 -4.61 16 17 S -0.16 -8.78 20.57 -56.49 -1.16 -9.95 16 18 C -0.54 -31.14 9.50 67.95 0.65 -30.50 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 22 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C 0.12 3.20 5.90 86.36 0.51 3.71 16 27 N -0.30 -6.97 12.05 -47.25 -0.57 -7.54 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.08 1.08 8.06 -2.39 -0.02 1.06 16 33 H 0.07 1.60 7.56 -2.38 -0.02 1.59 16 34 H 0.36 4.32 8.33 -89.69 -0.75 3.57 16 35 H 0.09 0.70 8.10 -2.39 -0.02 0.68 16 36 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 1.71 5.94 -2.39 -0.01 1.70 16 41 H 0.11 3.97 7.70 -2.40 -0.02 3.95 16 42 H 0.11 3.95 7.94 -2.39 -0.02 3.94 16 43 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 44 H 0.06 1.90 6.48 -2.39 -0.02 1.89 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -85.02 384.87 0.61 -84.41 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.26 Total: 16.69 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 6.96 Total: -0.84 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -7.42 Total: -108.06 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -85.02 0.61 -84.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.764 kcal (2) G-P(sol) polarization free energy of solvation -85.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds