Wall clock time and date at job start Tue Mar 31 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 N 1.40443 * 126.82460 * 2 1 4 4 C 1.30711 * 106.79559 * 180.25947 * 3 2 1 5 5 N 1.33245 * 108.94768 * 359.75389 * 4 3 2 6 6 C 1.30834 * 109.82335 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.95925 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47140 * 90.02216 * 7 6 5 9 9 C 1.46845 * 110.99951 * 294.21023 * 8 7 6 10 10 C 1.53037 * 109.52225 * 174.15937 * 9 8 7 11 11 C 1.53120 * 109.27746 * 59.17801 * 10 9 8 12 12 N 1.46499 * 109.52168 * 182.43853 * 11 10 9 13 13 C 1.34775 * 120.00366 * 274.68293 * 12 11 10 14 14 O 1.21281 * 119.99647 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00337 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47454 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00280 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99601 * 0.02562 * 17 16 15 19 19 C 1.38793 * 120.00305 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99651 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47054 * 60.00903 * 21 19 17 23 23 H 1.48508 * 109.47010 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47717 * 300.00605 * 21 19 17 25 25 C 1.53114 * 109.16254 * 302.34805 * 11 10 9 26 26 C 1.46845 * 110.99877 * 169.99756 * 8 7 6 27 27 H 1.08998 * 109.47117 * 270.16570 * 1 2 3 28 28 H 1.08997 * 109.47733 * 30.16795 * 1 2 3 29 29 H 1.08998 * 109.47252 * 150.16845 * 1 2 3 30 30 H 1.08004 * 125.53199 * 179.71494 * 4 3 2 31 31 H 1.09004 * 109.47103 * 330.02317 * 7 6 5 32 32 H 1.09000 * 109.47247 * 210.02195 * 7 6 5 33 33 H 1.08998 * 109.46500 * 294.17496 * 9 8 7 34 34 H 1.08995 * 109.46400 * 54.14290 * 9 8 7 35 35 H 1.09001 * 109.50550 * 299.23861 * 10 9 8 36 36 H 1.09002 * 109.53767 * 179.14167 * 10 9 8 37 37 H 1.09000 * 109.57245 * 62.28514 * 11 10 9 38 38 H 0.97004 * 120.00053 * 94.68459 * 12 11 10 39 39 H 1.08999 * 109.47518 * 300.00532 * 15 13 12 40 40 H 1.09008 * 109.46796 * 60.00371 * 15 13 12 41 41 H 0.96998 * 119.99938 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.50286 * 297.71173 * 25 11 10 43 43 H 1.08997 * 109.53662 * 177.61701 * 25 11 10 44 44 H 1.08995 * 109.46773 * 305.85989 * 26 8 7 45 45 H 1.09005 * 109.46091 * 65.83934 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5347 0.6765 -0.0057 5 7 3.5096 -0.6557 -0.0038 6 6 2.2706 -1.0761 0.0036 7 6 1.8246 -2.5155 0.0075 8 7 1.6870 -2.9819 1.3937 9 6 2.9899 -3.0125 2.0704 10 6 2.7912 -3.3612 3.5472 11 6 2.1060 -4.7262 3.6565 12 7 1.8604 -5.0392 5.0665 13 6 2.8271 -5.6170 5.8068 14 8 3.9005 -5.8775 5.3058 15 6 2.5748 -5.9384 7.2573 16 16 4.0523 -6.7011 7.9723 17 6 3.4928 -6.9648 9.6221 18 1 2.4935 -6.6704 9.9069 19 6 4.3359 -7.5517 10.5555 20 7 5.5537 -7.9109 10.2082 21 14 3.7429 -7.8305 12.3047 22 1 2.5527 -8.7184 12.2883 23 1 4.8247 -8.4668 13.0986 24 1 3.3802 -6.5277 12.9181 25 6 0.7740 -4.6818 2.9027 26 6 1.0312 -4.2947 1.4446 27 1 -0.3633 0.0030 1.0276 28 1 -0.3634 0.8884 -0.5164 29 1 -0.3634 -0.8915 -0.5112 30 1 4.4254 1.2873 -0.0116 31 1 2.5645 -3.1265 -0.5097 32 1 0.8642 -2.5997 -0.5012 33 1 3.6249 -3.7646 1.6020 34 1 3.4647 -2.0348 1.9888 35 1 2.1676 -2.6022 4.0196 36 1 3.7594 -3.3990 4.0463 37 1 2.7464 -5.4923 3.2196 38 1 1.0021 -4.8305 5.4673 39 1 2.3423 -5.0208 7.7977 40 1 1.7349 -6.6289 7.3356 41 1 6.1431 -8.3207 10.8605 42 1 0.1187 -3.9435 3.3649 43 1 0.3007 -5.6629 2.9408 44 1 0.0833 -4.2483 0.9085 45 1 1.6754 -5.0408 0.9793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226152763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:36 Heat of formation + Delta-G solvation = 58.833102 kcal Electronic energy + Delta-G solvation = -26411.961008 eV Core-core repulsion = 22592.648039 eV Total energy + Delta-G solvation = -3819.312969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45298 -39.92592 -38.50151 -35.33037 -34.38822 -32.71078 -32.41959 -31.26193 -30.96388 -29.05219 -27.83152 -26.50403 -25.46294 -23.55060 -23.18399 -22.29825 -20.64884 -20.32899 -20.06903 -17.83420 -17.36622 -17.02691 -16.29443 -16.19280 -15.52357 -15.44222 -15.27360 -14.87790 -14.84802 -14.79653 -14.11849 -13.87949 -13.71113 -13.63314 -13.45969 -13.30582 -13.02929 -12.72519 -12.60793 -12.37691 -12.04505 -11.92747 -11.58484 -11.45380 -11.04267 -11.03623 -10.94129 -10.79200 -10.70078 -10.33308 -10.05156 -9.93518 -9.81363 -9.36694 -9.05573 -8.86693 -8.82235 -8.22968 -6.49040 -6.20726 -3.91307 1.21828 1.95206 2.56566 3.03782 3.11001 3.23920 3.27951 3.31448 3.41909 3.71124 3.79736 4.09112 4.21323 4.27337 4.45999 4.58485 4.69483 4.70242 4.80376 4.90023 4.98942 5.04192 5.11696 5.11865 5.14224 5.17059 5.29026 5.36053 5.42419 5.61765 5.66809 5.69711 5.83742 5.90516 5.92723 6.02142 6.11099 6.14765 6.19506 6.37321 6.52241 6.64147 6.68507 7.59924 7.73911 7.77245 8.35749 8.63866 9.24351 10.86626 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025220 B = 0.001862 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.952649 B =15031.829425 C =15330.951340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.369 5.369 3 N -0.323 5.323 4 C 0.200 3.800 5 N -0.540 5.540 6 C 0.288 3.712 7 C 0.131 3.869 8 N -0.536 5.536 9 C 0.057 3.943 10 C -0.126 4.126 11 C 0.146 3.854 12 N -0.735 5.735 13 C 0.532 3.468 14 O -0.517 6.517 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.122 4.122 26 C 0.062 3.938 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.217 0.783 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.760 13.422 -23.518 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.160 5.160 3 N -0.151 5.151 4 C -0.102 4.102 5 N -0.268 5.268 6 C 0.011 3.989 7 C 0.000 4.000 8 N -0.262 5.262 9 C -0.071 4.071 10 C -0.165 4.165 11 C 0.040 3.960 12 N -0.388 5.388 13 C 0.319 3.681 14 O -0.391 6.391 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.160 4.160 26 C -0.066 4.066 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.234 0.766 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.080 13.783 -24.049 30.649 hybrid contribution -1.671 -0.288 1.560 2.304 sum -14.751 13.495 -22.488 30.090 Atomic orbital electron populations 1.21938 0.73690 1.04459 1.04274 1.50181 1.08039 1.03867 1.53915 1.78063 1.02203 1.08179 1.26653 1.25966 0.95787 0.90382 0.98114 1.70509 1.19552 1.11636 1.25091 1.24049 0.86187 0.92278 0.96395 1.20478 1.01862 0.86076 0.91542 1.61947 1.23656 1.27627 1.12989 1.22160 0.88535 1.02371 0.94005 1.21989 1.02107 0.96976 0.95398 1.20921 0.96359 0.96967 0.81704 1.46058 1.17409 1.64477 1.10874 1.20314 0.83745 0.76083 0.87997 1.90700 1.24246 1.51403 1.72750 1.23536 1.07566 1.04867 0.94462 1.85395 1.12267 1.77097 1.08579 1.22826 1.02678 1.47154 0.95768 0.91003 1.24993 0.94583 0.94784 0.99252 1.70010 1.06303 1.38745 1.35221 0.86224 0.78374 0.78590 0.82305 1.19951 1.20815 1.19950 1.21845 0.97271 1.02259 0.94641 1.22035 0.99020 0.88495 0.97074 0.89765 0.89166 0.89104 0.76625 0.90613 0.88505 0.93829 0.89621 0.91239 0.90397 0.89637 0.76901 0.89285 0.89291 0.92134 0.90498 0.90440 0.90059 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 11.33 59.84 0.68 1.11 16 2 N -0.37 -3.21 4.04 -65.11 -0.26 -3.48 16 3 N -0.32 -3.44 12.70 29.29 0.37 -3.07 16 4 C 0.20 1.99 13.03 -91.81 -1.20 0.79 16 5 N -0.54 -5.92 10.29 -11.97 -0.12 -6.04 16 6 C 0.29 2.62 6.61 -155.69 -1.03 1.59 16 7 C 0.13 0.84 5.29 -4.97 -0.03 0.82 16 8 N -0.54 -4.08 4.65 -236.12 -1.10 -5.18 16 9 C 0.06 0.59 5.31 -3.83 -0.02 0.56 16 10 C -0.13 -1.47 5.67 -26.65 -0.15 -1.62 16 11 C 0.15 1.65 2.52 -67.81 -0.17 1.48 16 12 N -0.73 -9.53 5.08 -53.69 -0.27 -9.80 16 13 C 0.53 9.80 7.82 -10.99 -0.09 9.71 16 14 O -0.52 -11.61 15.52 5.56 0.09 -11.53 16 15 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 C -0.12 -0.91 5.57 -26.65 -0.15 -1.06 16 26 C 0.06 0.38 5.46 -3.84 -0.02 0.36 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.16 7.10 -51.93 -0.37 -0.21 16 30 H 0.22 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.08 0.50 8.12 -51.93 -0.42 0.07 16 32 H 0.10 0.34 6.96 -51.93 -0.36 -0.02 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 1.01 6.43 -51.93 -0.33 0.67 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 38 H 0.40 4.01 8.61 -40.82 -0.35 3.65 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 40 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.33 8.01 -51.93 -0.42 -0.09 16 45 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -37.42 385.11 -10.59 -48.01 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.84 Total: 0.33 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.75 Total: -2.11 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.65 Total: -53.08 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.42 -10.59 -48.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.841 kcal (2) G-P(sol) polarization free energy of solvation -37.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds