Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 N 1.40443 * 126.82460 * 2 1 4 4 C 1.30711 * 106.79559 * 180.25947 * 3 2 1 5 5 N 1.33245 * 108.94768 * 359.75389 * 4 3 2 6 6 C 1.30834 * 109.82335 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.95925 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47140 * 90.02216 * 7 6 5 9 9 C 1.46845 * 110.99951 * 294.21023 * 8 7 6 10 10 C 1.53037 * 109.52225 * 174.15937 * 9 8 7 11 11 C 1.53120 * 109.27746 * 59.17801 * 10 9 8 12 12 N 1.46499 * 109.52168 * 182.43853 * 11 10 9 13 13 C 1.34775 * 120.00366 * 274.68293 * 12 11 10 14 14 O 1.21281 * 119.99647 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00337 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47454 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00280 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99601 * 0.02562 * 17 16 15 19 19 C 1.38793 * 120.00305 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99651 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47054 * 60.00903 * 21 19 17 23 23 H 1.48508 * 109.47010 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47717 * 300.00605 * 21 19 17 25 25 C 1.53114 * 109.16254 * 302.34805 * 11 10 9 26 26 C 1.46845 * 110.99877 * 169.99756 * 8 7 6 27 27 H 1.08998 * 109.47117 * 270.16570 * 1 2 3 28 28 H 1.08997 * 109.47733 * 30.16795 * 1 2 3 29 29 H 1.08998 * 109.47252 * 150.16845 * 1 2 3 30 30 H 1.08004 * 125.53199 * 179.71494 * 4 3 2 31 31 H 1.09004 * 109.47103 * 330.02317 * 7 6 5 32 32 H 1.09000 * 109.47247 * 210.02195 * 7 6 5 33 33 H 1.08998 * 109.46500 * 294.17496 * 9 8 7 34 34 H 1.08995 * 109.46400 * 54.14290 * 9 8 7 35 35 H 1.09001 * 109.50550 * 299.23861 * 10 9 8 36 36 H 1.09002 * 109.53767 * 179.14167 * 10 9 8 37 37 H 1.09000 * 109.57245 * 62.28514 * 11 10 9 38 38 H 0.97004 * 120.00053 * 94.68459 * 12 11 10 39 39 H 1.08999 * 109.47518 * 300.00532 * 15 13 12 40 40 H 1.09008 * 109.46796 * 60.00371 * 15 13 12 41 41 H 0.96998 * 119.99938 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.50286 * 297.71173 * 25 11 10 43 43 H 1.08997 * 109.53662 * 177.61701 * 25 11 10 44 44 H 1.08995 * 109.46773 * 305.85989 * 26 8 7 45 45 H 1.09005 * 109.46091 * 65.83934 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5347 0.6765 -0.0057 5 7 3.5096 -0.6557 -0.0038 6 6 2.2706 -1.0761 0.0036 7 6 1.8246 -2.5155 0.0075 8 7 1.6870 -2.9819 1.3937 9 6 2.9899 -3.0125 2.0704 10 6 2.7912 -3.3612 3.5472 11 6 2.1060 -4.7262 3.6565 12 7 1.8604 -5.0392 5.0665 13 6 2.8271 -5.6170 5.8068 14 8 3.9005 -5.8775 5.3058 15 6 2.5748 -5.9384 7.2573 16 16 4.0523 -6.7011 7.9723 17 6 3.4928 -6.9648 9.6221 18 1 2.4935 -6.6704 9.9069 19 6 4.3359 -7.5517 10.5555 20 7 5.5537 -7.9109 10.2082 21 14 3.7429 -7.8305 12.3047 22 1 2.5527 -8.7184 12.2883 23 1 4.8247 -8.4668 13.0986 24 1 3.3802 -6.5277 12.9181 25 6 0.7740 -4.6818 2.9027 26 6 1.0312 -4.2947 1.4446 27 1 -0.3633 0.0030 1.0276 28 1 -0.3634 0.8884 -0.5164 29 1 -0.3634 -0.8915 -0.5112 30 1 4.4254 1.2873 -0.0116 31 1 2.5645 -3.1265 -0.5097 32 1 0.8642 -2.5997 -0.5012 33 1 3.6249 -3.7646 1.6020 34 1 3.4647 -2.0348 1.9888 35 1 2.1676 -2.6022 4.0196 36 1 3.7594 -3.3990 4.0463 37 1 2.7464 -5.4923 3.2196 38 1 1.0021 -4.8305 5.4673 39 1 2.3423 -5.0208 7.7977 40 1 1.7349 -6.6289 7.3356 41 1 6.1431 -8.3207 10.8605 42 1 0.1187 -3.9435 3.3649 43 1 0.3007 -5.6629 2.9408 44 1 0.0833 -4.2483 0.9085 45 1 1.6754 -5.0408 0.9793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226152763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = 31.397380 kcal Electronic energy + Delta-G solvation = -26413.150710 eV Core-core repulsion = 22592.648039 eV Total energy + Delta-G solvation = -3820.502671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.10475 -41.03292 -39.55940 -36.34203 -34.98499 -34.58455 -33.65514 -32.15204 -31.75805 -30.38154 -28.40487 -27.69017 -27.12374 -24.29593 -24.03172 -22.96268 -21.64801 -21.27911 -20.95622 -19.77823 -17.95522 -17.89346 -17.73868 -17.11549 -16.87725 -16.48084 -16.25071 -16.05401 -15.89670 -15.76486 -15.48127 -14.81834 -14.71607 -14.67812 -14.33591 -14.12703 -13.95881 -13.77516 -13.58320 -13.35590 -13.16991 -12.90852 -12.85583 -12.67161 -12.62510 -12.34224 -12.19725 -11.85156 -11.74880 -11.55092 -11.12829 -11.04830 -10.89550 -10.73904 -10.55153 -10.27653 -10.06499 -9.46075 -8.66852 -8.34378 -6.12731 0.56989 1.27122 1.43979 1.44608 1.47066 1.56835 1.62780 1.87088 2.26252 2.30629 2.83249 2.99494 3.19655 3.32309 3.61170 3.70891 3.77603 3.87528 4.00028 4.07865 4.18430 4.26102 4.31099 4.35995 4.39450 4.47067 4.50980 4.54579 4.62754 4.68388 4.73730 4.73842 4.90574 4.94831 5.04288 5.15652 5.27851 5.31114 5.41458 5.44796 5.54657 5.82397 5.85216 6.02879 6.19630 6.54636 7.06562 7.10395 7.28022 8.74571 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025220 B = 0.001862 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.952649 B =15031.829425 C =15330.951340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.369 5.369 3 N -0.351 5.351 4 C 0.189 3.811 5 N -0.574 5.574 6 C 0.282 3.718 7 C 0.132 3.868 8 N -0.532 5.532 9 C 0.069 3.931 10 C -0.118 4.118 11 C 0.144 3.856 12 N -0.708 5.708 13 C 0.534 3.466 14 O -0.566 6.566 15 C -0.129 4.129 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.111 4.111 26 C 0.061 3.939 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.237 0.763 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.060 0.940 38 H 0.416 0.584 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.786 13.642 -23.944 33.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.160 5.160 3 N -0.180 5.180 4 C -0.113 4.113 5 N -0.303 5.303 6 C 0.005 3.995 7 C 0.003 3.997 8 N -0.258 5.258 9 C -0.060 4.060 10 C -0.158 4.158 11 C 0.040 3.960 12 N -0.361 5.361 13 C 0.319 3.681 14 O -0.444 6.444 15 C -0.280 4.280 16 S 0.073 5.927 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.150 4.150 26 C -0.066 4.066 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.253 0.747 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.139 0.861 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.191 14.030 -24.501 33.056 hybrid contribution -0.491 -0.284 1.578 1.677 sum -17.683 13.747 -22.923 32.048 Atomic orbital electron populations 1.22320 0.71313 1.06441 1.05141 1.50451 1.09326 1.03140 1.53051 1.77979 1.02741 1.09702 1.27558 1.26432 0.96489 0.90521 0.97860 1.70490 1.21227 1.12270 1.26309 1.24501 0.85900 0.93374 0.95683 1.20682 1.03923 0.84256 0.90868 1.61922 1.21553 1.28635 1.13721 1.21897 0.90064 1.00856 0.93197 1.21860 1.00162 0.97423 0.96318 1.21086 0.98698 0.95660 0.80602 1.45822 1.16838 1.62151 1.11320 1.20083 0.83965 0.76392 0.87621 1.90692 1.26448 1.53860 1.73410 1.23376 1.04029 1.05336 0.95288 1.85598 1.18296 1.78648 1.10128 1.23171 1.03201 1.47187 0.95865 0.89865 1.26153 0.94570 0.94184 1.04393 1.70184 1.07869 1.39775 1.36965 0.84993 0.78100 0.79029 0.75805 1.18513 1.20446 1.18706 1.21828 0.94534 1.03712 0.94886 1.22174 1.00569 0.87422 0.96435 0.89343 0.88601 0.85844 0.74747 0.90755 0.84430 0.94961 0.91430 0.90784 0.94253 0.92137 0.74638 0.87448 0.87055 0.92014 0.88995 0.88959 0.86131 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.33 127.77 1.45 1.96 16 2 N -0.37 -5.83 4.04 -359.90 -1.45 -7.28 16 3 N -0.35 -7.37 12.70 -61.24 -0.78 -8.14 16 4 C 0.19 3.82 13.03 180.76 2.36 6.18 16 5 N -0.57 -12.64 10.29 -191.77 -1.97 -14.61 16 6 C 0.28 4.76 6.61 138.22 0.91 5.67 16 7 C 0.13 1.34 5.29 85.56 0.45 1.79 16 8 N -0.53 -6.71 4.65 -900.93 -4.19 -10.90 16 9 C 0.07 1.40 5.31 86.33 0.46 1.85 16 10 C -0.12 -2.79 5.67 30.65 0.17 -2.61 16 11 C 0.14 3.11 2.52 45.07 0.11 3.23 16 12 N -0.71 -17.32 5.08 -442.17 -2.25 -19.57 16 13 C 0.53 19.65 7.82 87.66 0.69 20.34 16 14 O -0.57 -26.48 15.52 -3.03 -0.05 -26.53 16 15 C -0.13 -5.11 6.16 71.23 0.44 -4.67 16 16 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 17 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.67 5.49 84.86 0.47 1.14 16 20 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 21 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 25 C -0.11 -1.27 5.57 30.64 0.17 -1.09 16 26 C 0.06 0.52 5.46 86.33 0.47 0.99 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.12 -0.12 7.10 -2.39 -0.02 -0.14 16 30 H 0.24 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.07 0.82 8.12 -2.38 -0.02 0.80 16 32 H 0.14 0.26 6.96 -2.39 -0.02 0.25 16 33 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.64 6.43 -2.39 -0.02 1.63 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 38 H 0.42 7.11 8.61 -92.71 -0.80 6.32 16 39 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.12 0.22 8.01 -2.39 -0.02 0.20 16 45 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 Total: -1.00 -86.82 385.11 -0.54 -87.35 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.21 Total: 15.82 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 8.79 Total: 4.07 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -10.35 Total: -116.67 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.05 Total: -26.53 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -86.82 -0.54 -87.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.752 kcal (2) G-P(sol) polarization free energy of solvation -86.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds