Wall clock time and date at job start Tue Mar 31 2020 23:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48507 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47004 * 299.99624 * 3 2 1 6 6 H 1.48500 * 109.47416 * 59.99761 * 3 2 1 7 7 C 1.38812 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99633 * 158.24813 * 7 2 1 9 9 N 1.36931 * 120.00108 * 338.24299 * 7 2 1 10 10 C 1.46497 * 120.00179 * 144.19669 * 9 7 2 11 11 C 1.53001 * 109.47365 * 270.00445 * 10 9 7 12 12 C 1.52998 * 109.47351 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47001 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99830 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99837 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99686 * 180.02562 * 14 13 12 17 17 H 1.09002 * 115.55821 * 34.32985 * 16 14 13 18 18 C 1.53002 * 117.49565 * 179.97438 * 16 14 13 19 19 C 1.52991 * 60.00140 * 107.48863 * 18 16 14 20 20 F 1.39902 * 117.50028 * 252.50855 * 19 18 16 21 21 F 1.39903 * 117.50235 * 107.49309 * 19 18 16 22 22 C 1.46502 * 120.00105 * 324.20349 * 9 7 2 23 23 C 1.50710 * 109.46542 * 263.95394 * 22 9 7 24 24 C 1.38663 * 120.42048 * 84.54603 * 23 22 9 25 25 C 1.38628 * 118.42338 * 179.72051 * 24 23 22 26 26 C 1.38227 * 119.15812 * 0.02562 * 25 24 23 27 27 N 1.31855 * 120.76340 * 359.97438 * 26 25 24 28 28 C 1.31879 * 121.72582 * 0.02562 * 27 26 25 29 29 H 0.97002 * 120.00422 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46974 * 30.00174 * 10 9 7 31 31 H 1.08996 * 109.47377 * 149.99934 * 10 9 7 32 32 H 1.08998 * 109.46854 * 299.99803 * 11 10 9 33 33 H 1.08996 * 109.47290 * 59.99436 * 11 10 9 34 34 H 1.08998 * 109.47093 * 299.99794 * 12 11 10 35 35 H 1.08996 * 109.47272 * 59.99562 * 12 11 10 36 36 H 0.97005 * 120.00607 * 359.97438 * 13 12 11 37 37 H 1.09000 * 117.50043 * 214.97732 * 18 16 14 38 38 H 1.09005 * 117.50024 * 359.97438 * 18 16 14 39 39 H 1.08998 * 109.47855 * 143.95502 * 22 9 7 40 40 H 1.08998 * 109.47439 * 23.94882 * 22 9 7 41 41 H 1.08010 * 120.79111 * 359.69821 * 24 23 22 42 42 H 1.08003 * 120.41932 * 180.02562 * 25 24 23 43 43 H 1.08008 * 119.61616 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.61226 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0326 -1.2354 -0.3461 9 7 1.3989 -2.3456 0.4406 10 6 1.6929 -3.6280 -0.2037 11 6 0.7150 -3.8548 -1.3583 12 6 1.0225 -5.1938 -2.0316 13 7 0.0858 -5.4111 -3.1368 14 6 0.1673 -6.5337 -3.8784 15 8 1.0164 -7.3635 -3.6310 16 6 -0.7960 -6.7570 -5.0156 17 1 -1.1027 -5.8608 -5.5549 18 6 -0.6516 -8.0504 -5.8200 19 6 -1.8281 -7.8753 -4.8578 20 9 -1.8056 -8.6122 -3.6689 21 9 -3.0942 -7.6694 -5.4163 22 6 0.4505 -2.2865 1.5557 23 6 1.1624 -2.6292 2.8391 24 6 1.8528 -1.6530 3.5412 25 6 2.4878 -2.0126 4.7199 26 6 2.4125 -3.3232 5.1527 27 7 1.7467 -4.2253 4.4589 28 6 1.1308 -3.9191 3.3337 29 1 -0.4851 0.8400 -0.0004 30 1 2.7127 -3.6159 -0.5884 31 1 1.5887 -4.4326 0.5241 32 1 -0.3048 -3.8668 -0.9737 33 1 0.8192 -3.0501 -2.0861 34 1 2.0423 -5.1813 -2.4164 35 1 0.9186 -5.9987 -1.3041 36 1 -0.5936 -4.7476 -3.3345 37 1 -0.8639 -8.0052 -6.8881 38 1 0.1404 -8.7396 -5.5269 39 1 -0.3555 -3.0004 1.3855 40 1 0.0361 -1.2810 1.6274 41 1 1.8952 -0.6365 3.1783 42 1 3.0343 -1.2780 5.2928 43 1 2.9049 -3.6115 6.0698 44 1 0.5949 -4.6852 2.7931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230751855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:08 Heat of formation + Delta-G solvation = -53.294990 kcal Electronic energy + Delta-G solvation = -28498.599591 eV Core-core repulsion = 24088.291245 eV Total energy + Delta-G solvation = -4410.308345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.99328 -47.66217 -39.91748 -39.52046 -36.64972 -35.87917 -34.94431 -32.26643 -32.07805 -31.24126 -29.77240 -26.33474 -25.87201 -24.17126 -22.89667 -22.88203 -22.36061 -21.41347 -20.60383 -19.88819 -18.46869 -17.50977 -17.05059 -16.54002 -16.42040 -16.25060 -15.82986 -15.64275 -15.20480 -14.86257 -14.44973 -14.33721 -14.30781 -14.00305 -13.96051 -13.80505 -13.59378 -13.43813 -12.96534 -12.92619 -12.61752 -12.40129 -12.10615 -11.85403 -11.54696 -11.29126 -11.17611 -11.05909 -10.86713 -10.57054 -10.54153 -10.31991 -10.24228 -10.01704 -9.92458 -9.16744 -9.04832 -8.92967 -8.67374 -8.36758 -6.83572 -6.01757 -3.53735 1.68624 1.90641 1.94528 2.64069 2.94218 3.14666 3.21663 3.32618 3.35158 3.83110 4.12349 4.24053 4.28466 4.41249 4.62272 4.93847 5.05494 5.12575 5.17102 5.22678 5.35905 5.42914 5.47486 5.60793 5.64124 5.73545 5.76875 5.88479 6.05650 6.07790 6.15269 6.34748 6.39185 6.52128 6.53299 6.72819 6.77752 6.95767 7.10952 7.29595 7.42049 7.42911 7.64690 8.06946 8.30306 8.48596 8.96724 9.58980 10.16526 11.00346 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.002574 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.172668 B =10877.023632 C =12547.918283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.014 3.986 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.258 4.258 8 H 0.063 0.937 9 N -0.573 5.573 10 C 0.152 3.848 11 C -0.145 4.145 12 C 0.118 3.882 13 N -0.714 5.714 14 C 0.539 3.461 15 O -0.531 6.531 16 C -0.194 4.194 17 H 0.150 0.850 18 C -0.141 4.141 19 C 0.221 3.779 20 F -0.150 7.150 21 F -0.155 7.155 22 C 0.180 3.820 23 C -0.122 4.122 24 C -0.060 4.060 25 C -0.178 4.178 26 C 0.069 3.931 27 N -0.493 5.493 28 C 0.086 3.914 29 H 0.256 0.744 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.404 0.596 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 -9.249 -6.140 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.186 4.186 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.388 4.388 8 H 0.081 0.919 9 N -0.291 5.291 10 C 0.025 3.975 11 C -0.186 4.186 12 C -0.005 4.005 13 N -0.364 5.364 14 C 0.323 3.677 15 O -0.408 6.408 16 C -0.216 4.216 17 H 0.168 0.832 18 C -0.179 4.179 19 C 0.183 3.817 20 F -0.130 7.130 21 F -0.136 7.136 22 C 0.053 3.947 23 C -0.127 4.127 24 C -0.086 4.086 25 C -0.198 4.198 26 C -0.089 4.089 27 N -0.202 5.202 28 C -0.071 4.071 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.239 0.761 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.055 0.945 40 H 0.125 0.875 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.090 -10.555 -5.639 12.148 hybrid contribution -0.106 2.252 -0.341 2.280 sum -2.196 -8.303 -5.980 10.465 Atomic orbital electron populations 1.69996 1.05503 1.25961 1.50965 1.25117 0.94985 0.98687 0.99838 0.86407 0.79981 0.83965 0.77589 1.19962 1.21477 1.21252 1.19115 0.94456 0.85644 1.39581 0.91939 1.43746 1.51064 1.03064 1.31205 1.20805 0.96117 0.88564 0.91999 1.22443 1.01912 0.93990 1.00234 1.21587 0.92483 0.98989 0.87445 1.46054 1.36036 1.21211 1.33107 1.19150 0.84187 0.82217 0.82177 1.90724 1.36458 1.44167 1.69480 1.23778 0.99253 0.97411 1.01153 0.83207 1.24292 0.97283 0.97447 0.98883 1.19661 0.78908 0.97923 0.85158 1.93092 1.96445 1.77310 1.46197 1.93062 1.41389 1.94966 1.84165 1.19949 0.89780 1.03561 0.81380 1.22265 0.98324 0.93755 0.98334 1.21527 0.93939 1.00366 0.92814 1.22074 1.01790 0.97774 0.98175 1.22451 0.97570 0.89740 0.99114 1.67545 1.08174 1.37121 1.07369 1.22593 0.97097 0.95153 0.92302 0.93348 0.93470 0.94303 0.91983 0.90845 0.91534 0.91730 0.76142 0.85031 0.84607 0.94502 0.87534 0.85173 0.85895 0.83992 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.66 11.46 55.49 0.64 -22.03 16 2 C 0.01 0.36 4.90 -17.43 -0.09 0.27 16 3 Si 0.89 19.74 29.61 -169.99 -5.03 14.70 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.30 9.47 -15.06 -0.14 -6.44 16 8 H 0.06 1.57 7.92 -52.49 -0.42 1.15 16 9 N -0.57 -12.50 2.43 -174.61 -0.42 -12.92 16 10 C 0.15 2.82 5.68 -4.04 -0.02 2.80 16 11 C -0.15 -2.38 5.65 -26.73 -0.15 -2.53 16 12 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 13 N -0.71 -8.92 5.56 -60.30 -0.33 -9.26 16 14 C 0.54 6.99 7.25 -10.98 -0.08 6.91 16 15 O -0.53 -8.73 16.26 5.56 0.09 -8.64 16 16 C -0.19 -1.78 6.17 -91.77 -0.57 -2.35 16 17 H 0.15 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.14 -1.09 10.01 -26.73 -0.27 -1.35 16 19 C 0.22 2.24 5.20 -26.74 -0.14 2.10 16 20 F -0.15 -1.94 17.13 2.25 0.04 -1.90 16 21 F -0.16 -1.59 17.60 2.25 0.04 -1.55 16 22 C 0.18 3.77 5.38 -5.19 -0.03 3.74 16 23 C -0.12 -2.34 5.47 -104.48 -0.57 -2.91 16 24 C -0.06 -1.11 9.88 -39.28 -0.39 -1.49 16 25 C -0.18 -2.83 10.11 -39.44 -0.40 -3.23 16 26 C 0.07 1.09 11.18 -17.55 -0.20 0.89 16 27 N -0.49 -8.82 10.36 -13.25 -0.14 -8.95 16 28 C 0.09 1.55 10.81 -17.55 -0.19 1.36 16 29 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 30 H 0.05 0.88 8.04 -51.93 -0.42 0.47 16 31 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 37 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.14 1.15 7.67 -51.93 -0.40 0.75 16 39 H 0.04 0.73 8.03 -51.93 -0.42 0.32 16 40 H 0.11 2.54 5.47 -51.93 -0.28 2.25 16 41 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 42 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 44 H 0.14 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -29.36 387.60 -8.59 -37.95 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.06 Total: 7.32 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -3.25 Total: -0.57 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.26 Total: -53.16 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.36 -8.59 -37.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.344 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds