Wall clock time and date at job start Tue Mar 31 2020 23:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48507 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47004 * 299.99624 * 3 2 1 6 6 H 1.48500 * 109.47416 * 59.99761 * 3 2 1 7 7 C 1.38812 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99633 * 158.24813 * 7 2 1 9 9 N 1.36931 * 120.00108 * 338.24299 * 7 2 1 10 10 C 1.46497 * 120.00179 * 144.19669 * 9 7 2 11 11 C 1.53001 * 109.47365 * 270.00445 * 10 9 7 12 12 C 1.52998 * 109.47351 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47001 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99830 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99837 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99686 * 180.02562 * 14 13 12 17 17 H 1.09002 * 115.55821 * 34.32985 * 16 14 13 18 18 C 1.53002 * 117.49565 * 179.97438 * 16 14 13 19 19 C 1.52991 * 60.00140 * 107.48863 * 18 16 14 20 20 F 1.39902 * 117.50028 * 252.50855 * 19 18 16 21 21 F 1.39903 * 117.50235 * 107.49309 * 19 18 16 22 22 C 1.46502 * 120.00105 * 324.20349 * 9 7 2 23 23 C 1.50710 * 109.46542 * 263.95394 * 22 9 7 24 24 C 1.38663 * 120.42048 * 84.54603 * 23 22 9 25 25 C 1.38628 * 118.42338 * 179.72051 * 24 23 22 26 26 C 1.38227 * 119.15812 * 0.02562 * 25 24 23 27 27 N 1.31855 * 120.76340 * 359.97438 * 26 25 24 28 28 C 1.31879 * 121.72582 * 0.02562 * 27 26 25 29 29 H 0.97002 * 120.00422 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46974 * 30.00174 * 10 9 7 31 31 H 1.08996 * 109.47377 * 149.99934 * 10 9 7 32 32 H 1.08998 * 109.46854 * 299.99803 * 11 10 9 33 33 H 1.08996 * 109.47290 * 59.99436 * 11 10 9 34 34 H 1.08998 * 109.47093 * 299.99794 * 12 11 10 35 35 H 1.08996 * 109.47272 * 59.99562 * 12 11 10 36 36 H 0.97005 * 120.00607 * 359.97438 * 13 12 11 37 37 H 1.09000 * 117.50043 * 214.97732 * 18 16 14 38 38 H 1.09005 * 117.50024 * 359.97438 * 18 16 14 39 39 H 1.08998 * 109.47855 * 143.95502 * 22 9 7 40 40 H 1.08998 * 109.47439 * 23.94882 * 22 9 7 41 41 H 1.08010 * 120.79111 * 359.69821 * 24 23 22 42 42 H 1.08003 * 120.41932 * 180.02562 * 25 24 23 43 43 H 1.08008 * 119.61616 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.61226 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0326 -1.2354 -0.3461 9 7 1.3989 -2.3456 0.4406 10 6 1.6929 -3.6280 -0.2037 11 6 0.7150 -3.8548 -1.3583 12 6 1.0225 -5.1938 -2.0316 13 7 0.0858 -5.4111 -3.1368 14 6 0.1673 -6.5337 -3.8784 15 8 1.0164 -7.3635 -3.6310 16 6 -0.7960 -6.7570 -5.0156 17 1 -1.1027 -5.8608 -5.5549 18 6 -0.6516 -8.0504 -5.8200 19 6 -1.8281 -7.8753 -4.8578 20 9 -1.8056 -8.6122 -3.6689 21 9 -3.0942 -7.6694 -5.4163 22 6 0.4505 -2.2865 1.5557 23 6 1.1624 -2.6292 2.8391 24 6 1.8528 -1.6530 3.5412 25 6 2.4878 -2.0126 4.7199 26 6 2.4125 -3.3232 5.1527 27 7 1.7467 -4.2253 4.4589 28 6 1.1308 -3.9191 3.3337 29 1 -0.4851 0.8400 -0.0004 30 1 2.7127 -3.6159 -0.5884 31 1 1.5887 -4.4326 0.5241 32 1 -0.3048 -3.8668 -0.9737 33 1 0.8192 -3.0501 -2.0861 34 1 2.0423 -5.1813 -2.4164 35 1 0.9186 -5.9987 -1.3041 36 1 -0.5936 -4.7476 -3.3345 37 1 -0.8639 -8.0052 -6.8881 38 1 0.1404 -8.7396 -5.5269 39 1 -0.3555 -3.0004 1.3855 40 1 0.0361 -1.2810 1.6274 41 1 1.8952 -0.6365 3.1783 42 1 3.0343 -1.2780 5.2928 43 1 2.9049 -3.6115 6.0698 44 1 0.5949 -4.6852 2.7931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230751855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:07 Heat of formation + Delta-G solvation = -69.688262 kcal Electronic energy + Delta-G solvation = -28499.310456 eV Core-core repulsion = 24088.291245 eV Total energy + Delta-G solvation = -4411.019211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.80565 -48.49359 -40.97620 -40.88788 -38.11270 -36.85279 -36.15074 -33.82683 -33.63119 -32.60029 -31.27201 -27.65711 -27.51224 -25.37751 -24.29183 -23.73347 -23.59686 -22.77208 -21.89824 -21.14291 -19.34180 -18.80388 -18.34597 -17.79672 -17.47932 -17.21419 -17.07421 -16.88940 -16.62913 -16.31646 -15.86412 -15.70142 -15.38777 -15.14935 -14.97275 -14.82541 -14.70607 -14.62975 -14.37505 -14.35616 -13.83180 -13.52371 -13.41322 -13.29072 -12.96070 -12.78999 -12.54246 -12.44807 -12.28537 -12.19638 -12.11119 -11.87817 -11.49007 -11.40652 -11.01585 -10.61296 -10.52164 -10.28904 -10.17379 -9.76273 -8.62951 -7.87913 -5.42803 0.34193 0.49806 1.03199 1.43178 1.50125 1.57335 1.88156 2.03695 2.30324 2.49676 2.99280 3.13129 3.24255 3.34862 3.48186 3.67566 3.71816 3.82677 4.10802 4.13540 4.18448 4.27523 4.29957 4.35877 4.46268 4.52605 4.60419 4.65401 4.70898 4.80684 4.83808 4.91342 4.97295 5.04524 5.31788 5.32429 5.33810 5.49348 5.58556 5.71878 5.73894 5.94716 6.40709 6.45137 7.05971 7.13118 7.13819 7.81041 8.34598 9.11123 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.002574 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.172668 B =10877.023632 C =12547.918283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.021 4.021 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.052 0.948 9 N -0.585 5.585 10 C 0.150 3.850 11 C -0.124 4.124 12 C 0.131 3.869 13 N -0.710 5.710 14 C 0.534 3.466 15 O -0.570 6.570 16 C -0.190 4.190 17 H 0.184 0.816 18 C -0.117 4.117 19 C 0.202 3.798 20 F -0.173 7.173 21 F -0.156 7.156 22 C 0.189 3.811 23 C -0.138 4.138 24 C -0.077 4.077 25 C -0.169 4.169 26 C 0.074 3.926 27 N -0.507 5.507 28 C 0.084 3.916 29 H 0.253 0.747 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.415 0.585 37 H 0.171 0.829 38 H 0.127 0.873 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.157 0.843 43 H 0.182 0.818 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 -9.793 -6.149 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.219 4.219 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.070 0.930 9 N -0.304 5.304 10 C 0.023 3.977 11 C -0.164 4.164 12 C 0.007 3.993 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.450 6.450 16 C -0.212 4.212 17 H 0.201 0.799 18 C -0.155 4.155 19 C 0.164 3.836 20 F -0.154 7.154 21 F -0.137 7.137 22 C 0.063 3.937 23 C -0.142 4.142 24 C -0.104 4.104 25 C -0.189 4.189 26 C -0.084 4.084 27 N -0.216 5.216 28 C -0.073 4.073 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.251 0.749 37 H 0.188 0.812 38 H 0.146 0.854 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.175 0.825 43 H 0.199 0.801 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.576 -11.103 -5.651 12.558 hybrid contribution -0.233 2.375 -0.243 2.399 sum -1.809 -8.728 -5.894 10.686 Atomic orbital electron populations 1.70091 1.06418 1.26055 1.52463 1.25575 0.95457 1.00673 1.00220 0.85621 0.79025 0.81213 0.77056 1.19775 1.21918 1.21359 1.19174 0.94070 0.86829 1.39121 0.93042 1.43870 1.50974 1.03370 1.32183 1.20871 0.96343 0.87614 0.92834 1.22107 1.00840 0.94476 0.98969 1.21286 0.92731 0.97407 0.87911 1.45979 1.35855 1.21710 1.32535 1.19750 0.84238 0.81367 0.82627 1.90706 1.38287 1.45285 1.70680 1.23841 0.97863 0.99313 1.00170 0.79875 1.24474 0.95000 0.95620 1.00381 1.19978 0.79438 0.98747 0.85392 1.93040 1.96566 1.77959 1.47799 1.93057 1.41582 1.95020 1.84013 1.19699 0.89884 1.01869 0.82289 1.22049 0.99292 0.94739 0.98133 1.21578 0.94946 0.99669 0.94250 1.22384 1.00773 0.98725 0.97012 1.23123 0.96210 0.89310 0.99733 1.67627 1.08695 1.37874 1.07359 1.22689 0.97238 0.94775 0.92620 0.93771 0.93905 0.93109 0.92550 0.92764 0.91922 0.91982 0.74863 0.81168 0.85449 0.94245 0.90478 0.86686 0.82549 0.80138 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.76 11.46 21.65 0.25 -47.51 16 2 C -0.02 -1.05 4.90 84.86 0.42 -0.63 16 3 Si 0.94 41.16 29.61 68.60 2.03 43.19 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.26 -13.02 9.47 84.03 0.80 -12.22 16 8 H 0.05 2.63 7.92 -2.91 -0.02 2.61 16 9 N -0.58 -26.04 2.43 -706.35 -1.71 -27.76 16 10 C 0.15 5.61 5.68 86.38 0.49 6.10 16 11 C -0.12 -4.08 5.65 30.59 0.17 -3.91 16 12 C 0.13 3.72 5.67 86.38 0.49 4.21 16 13 N -0.71 -17.28 5.56 -463.07 -2.57 -19.85 16 14 C 0.53 13.38 7.25 87.66 0.64 14.02 16 15 O -0.57 -18.59 16.26 -3.03 -0.05 -18.64 16 16 C -0.19 -3.10 6.17 -11.54 -0.07 -3.17 16 17 H 0.18 1.70 8.14 -2.39 -0.02 1.68 16 18 C -0.12 -1.52 10.01 30.59 0.31 -1.21 16 19 C 0.20 3.79 5.20 30.59 0.16 3.95 16 20 F -0.17 -4.46 17.13 44.97 0.77 -3.69 16 21 F -0.16 -2.93 17.60 44.97 0.79 -2.14 16 22 C 0.19 8.12 5.38 85.64 0.46 8.58 16 23 C -0.14 -5.28 5.47 -19.77 -0.11 -5.39 16 24 C -0.08 -2.84 9.88 22.46 0.22 -2.62 16 25 C -0.17 -4.97 10.11 22.36 0.23 -4.75 16 26 C 0.07 2.11 11.18 84.69 0.95 3.05 16 27 N -0.51 -17.07 10.36 -195.84 -2.03 -19.10 16 28 C 0.08 2.93 10.81 84.67 0.92 3.85 16 29 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 30 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 31 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.41 8.29 8.47 -92.70 -0.79 7.50 16 37 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.13 1.96 7.67 -2.38 -0.02 1.94 16 39 H 0.04 1.61 8.03 -2.39 -0.02 1.59 16 40 H 0.08 3.81 5.47 -2.39 -0.01 3.80 16 41 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 43 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.15 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -64.75 387.60 3.78 -60.97 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.24 Total: 24.66 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.06 Total: 9.86 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -6.07 Total: -114.22 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.64 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.56 Total: -5.83 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -64.75 3.78 -60.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.714 kcal (2) G-P(sol) polarization free energy of solvation -64.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds