Wall clock time and date at job start Tue Mar 31 2020 23:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99650 * 2 1 4 4 H 1.48500 * 109.46964 * 239.99698 * 3 2 1 5 5 H 1.48497 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47057 * 120.00318 * 3 2 1 7 7 C 1.38813 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 202.94762 * 7 2 1 9 9 N 1.36936 * 119.99810 * 22.94391 * 7 2 1 10 10 C 1.46502 * 119.99681 * 214.00360 * 9 7 2 11 11 C 1.53001 * 109.47095 * 275.64272 * 10 9 7 12 12 C 1.52998 * 109.47339 * 180.02562 * 11 10 9 13 13 N 1.46505 * 109.47029 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99732 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99923 * 179.97438 * 14 13 12 17 17 H 1.09005 * 115.55173 * 325.67258 * 16 14 13 18 18 C 1.53004 * 117.50027 * 180.02562 * 16 14 13 19 19 C 1.53003 * 117.49886 * 111.37899 * 16 14 13 20 20 F 1.39899 * 117.49689 * 214.98122 * 19 16 14 21 21 F 1.39901 * 117.49571 * 0.02562 * 19 16 14 22 22 C 1.46493 * 120.00274 * 34.00306 * 9 7 2 23 23 C 1.50699 * 109.47444 * 90.00127 * 22 9 7 24 24 C 1.38679 * 120.41442 * 270.02400 * 23 22 9 25 25 C 1.38631 * 118.41540 * 179.97438 * 24 23 22 26 26 C 1.38220 * 119.16369 * 359.97438 * 25 24 23 27 27 N 1.31856 * 120.76594 * 359.72797 * 26 25 24 28 28 C 1.31886 * 121.72047 * 0.56743 * 27 26 25 29 29 H 0.96999 * 120.00526 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 35.64201 * 10 9 7 31 31 H 1.08998 * 109.47535 * 155.64634 * 10 9 7 32 32 H 1.09001 * 109.46957 * 300.00177 * 11 10 9 33 33 H 1.09008 * 109.47362 * 59.99772 * 11 10 9 34 34 H 1.09001 * 109.47161 * 299.99955 * 12 11 10 35 35 H 1.08995 * 109.47161 * 59.99834 * 12 11 10 36 36 H 0.96993 * 119.99978 * 359.97438 * 13 12 11 37 37 H 1.09002 * 117.49510 * 359.97438 * 18 16 14 38 38 H 1.08996 * 117.49951 * 145.02324 * 18 16 14 39 39 H 1.09000 * 109.46922 * 329.99431 * 22 9 7 40 40 H 1.09005 * 109.47340 * 210.00051 * 22 9 7 41 41 H 1.07991 * 120.79177 * 359.97438 * 24 23 22 42 42 H 1.07997 * 120.41538 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.61805 * 179.97438 * 26 25 24 44 44 H 1.08004 * 119.61213 * 179.70832 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0262 -1.2392 0.3641 9 7 1.4069 -2.3409 -0.4634 10 6 1.7194 -3.6354 0.1472 11 6 2.9874 -4.2071 -0.4903 12 6 3.3135 -5.5594 0.1469 13 7 4.5280 -6.1064 -0.4631 14 6 5.0087 -7.2979 -0.0560 15 8 4.4361 -7.9170 0.8158 16 6 6.2576 -7.8609 -0.6838 17 1 6.3932 -7.6382 -1.7422 18 6 6.7523 -9.2178 -0.1787 19 6 7.5123 -7.9410 0.1881 20 9 8.7462 -7.7225 -0.4340 21 9 7.4121 -7.4863 1.5074 22 6 0.4488 -2.2648 -1.5689 23 6 1.1787 -2.4217 -2.8780 24 6 1.6762 -1.3105 -3.5420 25 6 2.3414 -1.5026 -4.7430 26 6 2.4861 -2.7862 -5.2350 27 7 2.0050 -3.8203 -4.5733 28 6 1.3621 -3.6746 -3.4311 29 1 -0.4851 0.8400 -0.0004 30 1 1.8786 -3.5035 1.2174 31 1 0.8896 -4.3234 -0.0146 32 1 2.8282 -4.3391 -1.5605 33 1 3.8174 -3.5192 -0.3285 34 1 3.4725 -5.4278 1.2172 35 1 2.4835 -6.2470 -0.0152 36 1 4.9861 -5.6112 -1.1600 37 1 6.1746 -9.7030 0.6081 38 1 7.2139 -9.8872 -0.9045 39 1 -0.0549 -1.2984 -1.5473 40 1 -0.2885 -3.0611 -1.4664 41 1 1.5484 -0.3191 -3.1333 42 1 2.7421 -0.6601 -5.2870 43 1 3.0026 -2.9443 -6.1701 44 1 0.9780 -4.5450 -2.9200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230751856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:12 Heat of formation + Delta-G solvation = -51.291470 kcal Electronic energy + Delta-G solvation = -29045.547903 eV Core-core repulsion = 24635.326436 eV Total energy + Delta-G solvation = -4410.221466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.01222 -47.68277 -39.95763 -39.55568 -36.68274 -35.89864 -34.98170 -32.33043 -32.06309 -31.20548 -29.85744 -26.36448 -25.86491 -24.19090 -22.92026 -22.90288 -22.42759 -21.26139 -20.66467 -20.07905 -18.50516 -17.53705 -17.00484 -16.54163 -16.53444 -16.29384 -15.83196 -15.61492 -15.33627 -14.91779 -14.49175 -14.33590 -14.20809 -14.11829 -13.92535 -13.81870 -13.50694 -13.42580 -13.11844 -12.89345 -12.63015 -12.42551 -12.11315 -11.89996 -11.57342 -11.45925 -11.25745 -10.92302 -10.87393 -10.61945 -10.58998 -10.35093 -10.16886 -10.05474 -10.03295 -9.18717 -9.09658 -8.95126 -8.67132 -8.33163 -6.83010 -5.98172 -3.51837 1.66824 1.89160 1.91619 2.61686 2.90192 3.11907 3.24909 3.32324 3.34247 3.80797 4.09301 4.21792 4.28312 4.40178 4.58508 4.90793 5.02739 5.10099 5.15406 5.20382 5.33820 5.38855 5.41220 5.59271 5.62117 5.68356 5.78054 5.80457 6.01140 6.05337 6.10969 6.33387 6.34237 6.46691 6.50382 6.68425 6.72145 6.89687 7.08361 7.28712 7.36444 7.47883 7.65301 8.02748 8.30337 8.45762 8.97899 9.60964 10.16070 11.02128 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.002898 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.361855 B = 9658.427495 C =10666.924247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.013 3.987 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.259 4.259 8 H 0.062 0.938 9 N -0.572 5.572 10 C 0.152 3.848 11 C -0.153 4.153 12 C 0.120 3.880 13 N -0.715 5.715 14 C 0.540 3.460 15 O -0.530 6.530 16 C -0.194 4.194 17 H 0.150 0.850 18 C -0.140 4.140 19 C 0.221 3.779 20 F -0.155 7.155 21 F -0.150 7.150 22 C 0.170 3.830 23 C -0.116 4.116 24 C -0.061 4.061 25 C -0.177 4.177 26 C 0.067 3.933 27 N -0.494 5.494 28 C 0.087 3.913 29 H 0.258 0.742 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.403 0.597 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.039 0.961 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -12.229 -6.011 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.187 4.187 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.080 0.920 9 N -0.289 5.289 10 C 0.024 3.976 11 C -0.194 4.194 12 C -0.003 4.003 13 N -0.365 5.365 14 C 0.324 3.676 15 O -0.407 6.407 16 C -0.216 4.216 17 H 0.167 0.833 18 C -0.178 4.178 19 C 0.183 3.817 20 F -0.136 7.136 21 F -0.130 7.130 22 C 0.044 3.956 23 C -0.121 4.121 24 C -0.088 4.088 25 C -0.197 4.197 26 C -0.090 4.090 27 N -0.203 5.203 28 C -0.071 4.071 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.237 0.763 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.129 0.871 40 H 0.057 0.943 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.159 0.841 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.973 -13.307 -5.610 17.002 hybrid contribution 1.005 2.297 -0.159 2.512 sum 9.978 -11.010 -5.769 15.939 Atomic orbital electron populations 1.69955 1.05522 1.26180 1.50697 1.25056 0.94931 0.98643 1.00090 0.86530 0.79399 0.83380 0.78565 1.20788 1.21426 1.20539 1.18986 0.95138 0.86012 1.38654 0.91983 1.43706 1.50283 1.02092 1.32852 1.20764 0.92949 0.87637 0.96217 1.22557 1.02218 0.93692 1.00925 1.21516 0.85368 0.95569 0.97854 1.46020 1.29015 1.20189 1.41252 1.19134 0.84373 0.81566 0.82555 1.90729 1.59660 1.59456 1.30809 1.23774 0.93330 1.02490 1.02048 0.83253 1.24304 0.98893 0.90392 1.04231 1.19674 0.80154 1.03687 0.78167 1.93061 1.43602 1.95642 1.81275 1.93094 1.95864 1.90055 1.33999 1.20121 0.90224 1.04194 0.81085 1.22239 0.98477 0.93083 0.98255 1.21539 0.94338 0.99877 0.92996 1.22067 1.01482 0.98396 0.97782 1.22414 0.98787 0.88601 0.99233 1.67545 1.09615 1.34715 1.08378 1.22519 0.96194 0.96573 0.91790 0.93185 0.92988 0.93981 0.91701 0.91643 0.91380 0.91446 0.76312 0.84574 0.85000 0.87127 0.94299 0.85306 0.86004 0.84095 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.14 11.31 55.49 0.63 -22.52 16 2 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 3 Si 0.89 20.01 29.61 -169.99 -5.03 14.98 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.36 9.48 -15.06 -0.14 -6.51 16 8 H 0.06 1.55 7.93 -52.49 -0.42 1.14 16 9 N -0.57 -12.51 2.44 -174.61 -0.43 -12.94 16 10 C 0.15 2.79 5.72 -4.04 -0.02 2.77 16 11 C -0.15 -2.40 5.62 -26.73 -0.15 -2.55 16 12 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 13 N -0.71 -8.81 5.56 -60.29 -0.33 -9.15 16 14 C 0.54 6.93 7.25 -10.99 -0.08 6.85 16 15 O -0.53 -8.61 16.26 5.55 0.09 -8.52 16 16 C -0.19 -1.78 6.17 -91.77 -0.57 -2.34 16 17 H 0.15 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.14 -1.07 10.02 -26.70 -0.27 -1.34 16 19 C 0.22 2.23 5.20 -26.70 -0.14 2.10 16 20 F -0.16 -1.59 17.60 2.25 0.04 -1.55 16 21 F -0.15 -1.95 17.13 2.25 0.04 -1.91 16 22 C 0.17 3.56 5.48 -5.20 -0.03 3.53 16 23 C -0.12 -2.16 5.46 -104.48 -0.57 -2.73 16 24 C -0.06 -1.12 9.86 -39.27 -0.39 -1.50 16 25 C -0.18 -2.77 10.11 -39.44 -0.40 -3.17 16 26 C 0.07 1.02 11.18 -17.55 -0.20 0.83 16 27 N -0.49 -8.35 10.36 -13.26 -0.14 -8.49 16 28 C 0.09 1.49 9.05 -17.55 -0.16 1.33 16 29 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 31 H 0.04 0.72 7.83 -51.93 -0.41 0.31 16 32 H 0.06 1.04 6.14 -51.93 -0.32 0.72 16 33 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.40 4.20 8.47 -40.82 -0.35 3.86 16 37 H 0.14 1.14 7.67 -51.93 -0.40 0.74 16 38 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 2.65 5.27 -51.93 -0.27 2.37 16 40 H 0.04 0.76 7.81 -51.93 -0.41 0.36 16 41 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 42 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.14 2.23 8.02 -52.48 -0.42 1.81 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -29.38 383.24 -8.50 -37.88 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.92 Total: 7.28 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.22 Total: -0.84 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.27 Total: -53.09 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.08 Total: -3.46 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.38 -8.50 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.409 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds