Wall clock time and date at job start Tue Mar 31 2020 23:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99650 * 2 1 4 4 H 1.48500 * 109.46964 * 239.99698 * 3 2 1 5 5 H 1.48497 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47057 * 120.00318 * 3 2 1 7 7 C 1.38813 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 202.94762 * 7 2 1 9 9 N 1.36936 * 119.99810 * 22.94391 * 7 2 1 10 10 C 1.46502 * 119.99681 * 214.00360 * 9 7 2 11 11 C 1.53001 * 109.47095 * 275.64272 * 10 9 7 12 12 C 1.52998 * 109.47339 * 180.02562 * 11 10 9 13 13 N 1.46505 * 109.47029 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99732 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99923 * 179.97438 * 14 13 12 17 17 H 1.09005 * 115.55173 * 325.67258 * 16 14 13 18 18 C 1.53004 * 117.50027 * 180.02562 * 16 14 13 19 19 C 1.53003 * 117.49886 * 111.37899 * 16 14 13 20 20 F 1.39899 * 117.49689 * 214.98122 * 19 16 14 21 21 F 1.39901 * 117.49571 * 0.02562 * 19 16 14 22 22 C 1.46493 * 120.00274 * 34.00306 * 9 7 2 23 23 C 1.50699 * 109.47444 * 90.00127 * 22 9 7 24 24 C 1.38679 * 120.41442 * 270.02400 * 23 22 9 25 25 C 1.38631 * 118.41540 * 179.97438 * 24 23 22 26 26 C 1.38220 * 119.16369 * 359.97438 * 25 24 23 27 27 N 1.31856 * 120.76594 * 359.72797 * 26 25 24 28 28 C 1.31886 * 121.72047 * 0.56743 * 27 26 25 29 29 H 0.96999 * 120.00526 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 35.64201 * 10 9 7 31 31 H 1.08998 * 109.47535 * 155.64634 * 10 9 7 32 32 H 1.09001 * 109.46957 * 300.00177 * 11 10 9 33 33 H 1.09008 * 109.47362 * 59.99772 * 11 10 9 34 34 H 1.09001 * 109.47161 * 299.99955 * 12 11 10 35 35 H 1.08995 * 109.47161 * 59.99834 * 12 11 10 36 36 H 0.96993 * 119.99978 * 359.97438 * 13 12 11 37 37 H 1.09002 * 117.49510 * 359.97438 * 18 16 14 38 38 H 1.08996 * 117.49951 * 145.02324 * 18 16 14 39 39 H 1.09000 * 109.46922 * 329.99431 * 22 9 7 40 40 H 1.09005 * 109.47340 * 210.00051 * 22 9 7 41 41 H 1.07991 * 120.79177 * 359.97438 * 24 23 22 42 42 H 1.07997 * 120.41538 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.61805 * 179.97438 * 26 25 24 44 44 H 1.08004 * 119.61213 * 179.70832 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0262 -1.2392 0.3641 9 7 1.4069 -2.3409 -0.4634 10 6 1.7194 -3.6354 0.1472 11 6 2.9874 -4.2071 -0.4903 12 6 3.3135 -5.5594 0.1469 13 7 4.5280 -6.1064 -0.4631 14 6 5.0087 -7.2979 -0.0560 15 8 4.4361 -7.9170 0.8158 16 6 6.2576 -7.8609 -0.6838 17 1 6.3932 -7.6382 -1.7422 18 6 6.7523 -9.2178 -0.1787 19 6 7.5123 -7.9410 0.1881 20 9 8.7462 -7.7225 -0.4340 21 9 7.4121 -7.4863 1.5074 22 6 0.4488 -2.2648 -1.5689 23 6 1.1787 -2.4217 -2.8780 24 6 1.6762 -1.3105 -3.5420 25 6 2.3414 -1.5026 -4.7430 26 6 2.4861 -2.7862 -5.2350 27 7 2.0050 -3.8203 -4.5733 28 6 1.3621 -3.6746 -3.4311 29 1 -0.4851 0.8400 -0.0004 30 1 1.8786 -3.5035 1.2174 31 1 0.8896 -4.3234 -0.0146 32 1 2.8282 -4.3391 -1.5605 33 1 3.8174 -3.5192 -0.3285 34 1 3.4725 -5.4278 1.2172 35 1 2.4835 -6.2470 -0.0152 36 1 4.9861 -5.6112 -1.1600 37 1 6.1746 -9.7030 0.6081 38 1 7.2139 -9.8872 -0.9045 39 1 -0.0549 -1.2984 -1.5473 40 1 -0.2885 -3.0611 -1.4664 41 1 1.5484 -0.3191 -3.1333 42 1 2.7421 -0.6601 -5.2870 43 1 3.0026 -2.9443 -6.1701 44 1 0.9780 -4.5450 -2.9200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230751856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:11 Heat of formation + Delta-G solvation = -68.067415 kcal Electronic energy + Delta-G solvation = -29046.275362 eV Core-core repulsion = 24635.326436 eV Total energy + Delta-G solvation = -4410.948926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.81673 -48.50765 -41.00517 -40.86990 -38.11772 -36.86318 -36.16885 -33.87844 -33.58644 -32.52667 -31.34359 -27.64732 -27.52780 -25.37894 -24.26360 -23.74946 -23.60685 -22.56494 -22.08137 -21.23456 -19.36424 -18.74369 -18.37461 -17.83202 -17.49153 -17.24564 -17.10370 -16.79319 -16.66117 -16.42011 -15.88728 -15.56296 -15.36631 -15.16017 -14.97379 -14.78400 -14.71783 -14.61159 -14.49182 -14.27764 -13.82841 -13.50349 -13.39095 -13.30082 -12.99727 -12.91626 -12.61362 -12.38086 -12.32000 -12.19183 -12.13063 -11.85526 -11.55115 -11.41787 -11.03351 -10.57838 -10.51333 -10.28083 -10.19316 -9.68782 -8.63834 -7.85944 -5.43170 0.37014 0.52269 1.01999 1.44023 1.47804 1.52818 1.86562 2.02025 2.29461 2.48925 3.01108 3.12396 3.23028 3.33099 3.47050 3.69497 3.70886 3.81156 4.09036 4.13134 4.18209 4.27166 4.31454 4.39371 4.45657 4.47443 4.60023 4.64032 4.72127 4.80060 4.81864 4.91719 4.98642 5.04724 5.27668 5.31742 5.35501 5.47081 5.57918 5.70629 5.79589 5.96791 6.38038 6.44028 7.04489 7.13289 7.15606 7.82203 8.32811 9.10334 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.002898 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.361855 B = 9658.427495 C =10666.924247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.026 4.026 3 Si 0.942 3.058 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.260 4.260 8 H 0.053 0.947 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.128 4.128 12 C 0.130 3.870 13 N -0.709 5.709 14 C 0.535 3.465 15 O -0.569 6.569 16 C -0.189 4.189 17 H 0.185 0.815 18 C -0.116 4.116 19 C 0.199 3.801 20 F -0.156 7.156 21 F -0.174 7.174 22 C 0.177 3.823 23 C -0.129 4.129 24 C -0.080 4.080 25 C -0.171 4.171 26 C 0.076 3.924 27 N -0.501 5.501 28 C 0.091 3.909 29 H 0.253 0.747 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.127 0.873 38 H 0.171 0.829 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.108 0.892 42 H 0.152 0.848 43 H 0.181 0.819 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 -13.689 -8.581 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.224 4.224 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.390 4.390 8 H 0.071 0.929 9 N -0.304 5.304 10 C 0.022 3.978 11 C -0.168 4.168 12 C 0.006 3.994 13 N -0.360 5.360 14 C 0.321 3.679 15 O -0.448 6.448 16 C -0.211 4.211 17 H 0.202 0.798 18 C -0.154 4.154 19 C 0.162 3.838 20 F -0.137 7.137 21 F -0.155 7.155 22 C 0.050 3.950 23 C -0.134 4.134 24 C -0.107 4.107 25 C -0.190 4.190 26 C -0.082 4.082 27 N -0.210 5.210 28 C -0.066 4.066 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.145 0.855 38 H 0.189 0.811 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.126 0.874 42 H 0.170 0.830 43 H 0.198 0.802 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.732 -14.778 -8.208 20.023 hybrid contribution 0.473 2.713 0.583 2.815 sum 11.205 -12.065 -7.625 18.145 Atomic orbital electron populations 1.70066 1.06535 1.26188 1.52581 1.25552 0.95401 1.00776 1.00655 0.85746 0.78231 0.80571 0.78404 1.20271 1.21893 1.20692 1.19089 0.94759 0.87184 1.37958 0.92900 1.43847 1.50233 1.02480 1.33837 1.20850 0.94747 0.86763 0.95453 1.22188 1.00003 0.93981 1.00673 1.21251 0.86400 0.94673 0.97055 1.45931 1.28459 1.20310 1.41314 1.19740 0.85151 0.81104 0.81945 1.90713 1.61145 1.60447 1.32534 1.23840 0.90625 1.03421 1.03193 0.79815 1.24488 0.96949 0.89753 1.04197 1.20016 0.80435 1.05995 0.77336 1.93055 1.43675 1.95832 1.81107 1.93040 1.95996 1.90556 1.35877 1.19888 0.90260 1.02587 0.82256 1.21941 0.99418 0.94185 0.97813 1.21549 0.95673 0.98914 0.94570 1.22347 1.00253 0.99911 0.96523 1.23074 0.97308 0.87839 0.99942 1.67646 1.09798 1.35402 1.08125 1.22575 0.95990 0.96081 0.91985 0.93741 0.94484 0.92615 0.91467 0.93128 0.92628 0.91146 0.74998 0.85461 0.81090 0.90266 0.93780 0.87379 0.83015 0.80158 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.43 11.31 21.65 0.24 -49.18 16 2 C -0.03 -1.34 4.95 84.86 0.42 -0.92 16 3 Si 0.94 41.96 29.61 68.60 2.03 43.99 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.26 -13.10 9.48 84.03 0.80 -12.30 16 8 H 0.05 2.72 7.93 -2.91 -0.02 2.69 16 9 N -0.58 -26.14 2.44 -706.35 -1.73 -27.87 16 10 C 0.15 5.52 5.72 86.38 0.49 6.02 16 11 C -0.13 -3.96 5.62 30.59 0.17 -3.79 16 12 C 0.13 3.57 5.67 86.38 0.49 4.06 16 13 N -0.71 -16.50 5.56 -463.05 -2.57 -19.07 16 14 C 0.53 13.00 7.25 87.66 0.64 13.63 16 15 O -0.57 -18.23 16.26 -3.05 -0.05 -18.28 16 16 C -0.19 -2.96 6.17 -11.54 -0.07 -3.03 16 17 H 0.18 1.55 8.14 -2.38 -0.02 1.53 16 18 C -0.12 -1.45 10.02 30.61 0.31 -1.14 16 19 C 0.20 3.69 5.20 30.61 0.16 3.85 16 20 F -0.16 -2.87 17.60 44.97 0.79 -2.08 16 21 F -0.17 -4.50 17.13 44.97 0.77 -3.73 16 22 C 0.18 7.54 5.48 85.63 0.47 8.01 16 23 C -0.13 -4.78 5.46 -19.77 -0.11 -4.89 16 24 C -0.08 -2.90 9.86 22.47 0.22 -2.68 16 25 C -0.17 -4.87 10.11 22.36 0.23 -4.64 16 26 C 0.08 2.01 11.18 84.68 0.95 2.96 16 27 N -0.50 -15.40 10.36 -195.85 -2.03 -17.43 16 28 C 0.09 2.95 9.05 84.67 0.77 3.72 16 29 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 30 H 0.04 1.47 8.09 -2.39 -0.02 1.45 16 31 H 0.06 1.90 7.83 -2.39 -0.02 1.88 16 32 H 0.07 2.06 6.14 -2.39 -0.01 2.05 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 7.77 8.47 -92.71 -0.79 6.99 16 37 H 0.13 1.90 7.67 -2.39 -0.02 1.88 16 38 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 3.95 5.27 -2.39 -0.01 3.94 16 40 H 0.04 1.77 7.81 -2.38 -0.02 1.75 16 41 H 0.11 4.32 8.06 -2.92 -0.02 4.30 16 42 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 43 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.15 4.54 8.02 -2.91 -0.02 4.52 16 Total: -1.00 -65.54 383.24 3.63 -61.91 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.25 Total: 22.88 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.93 Total: 8.87 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.08 Total: -113.55 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.05 Total: -18.28 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 1.56 Total: -5.82 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -65.54 3.63 -61.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.158 kcal (2) G-P(sol) polarization free energy of solvation -65.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds