Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08993 * 112.96042 * 72.85831 * 4 3 2 6 6 C 1.53938 * 113.75639 * 204.50624 * 4 3 2 7 7 C 1.53932 * 86.34323 * 138.03736 * 6 4 3 8 8 N 1.47960 * 113.75771 * 301.06174 * 4 3 2 9 9 C 1.46901 * 110.99711 * 108.10558 * 8 4 3 10 10 C 1.50697 * 109.47321 * 170.00171 * 9 8 4 11 11 C 1.39678 * 127.05062 * 94.99638 * 10 9 8 12 12 N 1.31378 * 105.89988 * 179.97438 * 11 10 9 13 13 N 1.28605 * 108.71826 * 359.97438 * 12 11 10 14 14 C 1.46498 * 124.62047 * 180.02562 * 13 12 11 15 15 N 1.28599 * 110.76293 * 359.75286 * 13 12 11 16 16 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 17 17 O 1.21279 * 120.00410 * 179.97438 * 16 2 1 18 18 C 1.50703 * 119.99541 * 359.97438 * 16 2 1 19 19 S 1.81004 * 109.46790 * 180.02562 * 18 16 2 20 20 C 1.76197 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00243 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00041 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99629 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99851 * 24 22 20 26 26 H 1.48504 * 109.47049 * 209.99718 * 24 22 20 27 27 H 1.48500 * 109.47362 * 330.00074 * 24 22 20 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09000 * 113.73352 * 252.39461 * 6 4 3 34 34 H 1.09001 * 113.73365 * 23.56856 * 6 4 3 35 35 H 1.09002 * 113.75955 * 90.59045 * 7 6 4 36 36 H 1.08995 * 113.76221 * 221.85632 * 7 6 4 37 37 H 1.09004 * 109.46500 * 289.99863 * 9 8 4 38 38 H 1.08995 * 109.47239 * 49.99638 * 9 8 4 39 39 H 1.07998 * 127.05079 * 359.97438 * 11 10 9 40 40 H 1.09002 * 109.47282 * 89.97244 * 14 13 12 41 41 H 1.09000 * 109.47280 * 209.98169 * 14 13 12 42 42 H 1.09006 * 109.46840 * 329.97769 * 14 13 12 43 43 H 1.08996 * 109.47057 * 299.99739 * 18 16 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 18 16 2 45 45 H 0.97006 * 120.00094 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 3.2145 1.1120 1.9419 6 6 2.6542 3.2283 1.5999 7 6 1.7733 3.1154 2.8571 8 7 1.2180 1.8919 2.2374 9 6 1.0690 0.8198 3.2306 10 6 -0.0525 1.1637 4.1766 11 6 -1.3851 0.7550 4.0860 12 7 -1.9965 1.2896 5.1187 13 7 -1.1417 1.9688 5.7983 14 6 -1.4523 2.7102 7.0230 15 7 0.0241 1.9040 5.2594 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0020 22 6 1.9282 -6.5081 -0.0020 23 7 1.0915 -7.5241 -0.0021 24 14 3.7708 -6.8154 -0.0015 25 1 4.2585 -6.8978 1.3987 26 1 4.0598 -8.0924 -0.7023 27 1 4.4588 -5.7004 -0.7004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 3.6846 3.5145 1.8105 34 1 2.2054 3.8159 0.7989 35 1 2.3356 2.9279 3.7719 36 1 1.0501 3.9242 2.9608 37 1 0.8412 -0.1171 2.7224 38 1 1.9974 0.7126 3.7915 39 1 -1.8230 0.1281 3.3234 40 1 -1.3124 2.0600 7.8867 41 1 -0.7888 3.5710 7.1049 42 1 -2.4871 3.0510 6.9888 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 1.4316 -8.4326 -0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = 121.917632 kcal Electronic energy + Delta-G solvation = -27307.753987 eV Core-core repulsion = 23491.176569 eV Total energy + Delta-G solvation = -3816.577418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.71879 -40.47611 -39.00855 -35.20581 -34.45112 -32.85369 -32.42050 -31.21974 -30.25619 -28.10378 -27.62830 -26.24975 -25.58390 -24.76648 -23.45858 -22.43675 -20.99103 -19.94161 -19.12603 -17.61991 -17.49458 -17.11664 -16.64583 -16.34612 -16.04177 -15.67653 -15.14985 -14.94145 -14.75867 -14.67065 -13.93223 -13.69724 -13.46306 -13.35326 -13.24846 -13.11870 -12.91404 -12.76352 -12.33327 -12.06472 -11.95244 -11.88096 -11.68764 -11.63570 -11.23591 -11.06981 -10.99474 -10.97838 -10.88052 -10.54747 -10.41828 -9.83901 -9.46845 -9.36940 -9.08547 -8.98608 -8.46714 -8.40771 -6.89648 -6.27209 -3.98501 1.60428 2.09838 2.22946 2.76341 2.98792 3.23501 3.34310 3.51807 3.60321 3.75558 3.90950 4.27793 4.34629 4.51996 4.56732 4.63355 4.68543 4.73462 4.88688 4.97008 5.01760 5.07818 5.11952 5.18913 5.21393 5.31760 5.34811 5.38870 5.48777 5.55315 5.57757 5.64509 5.73351 5.81741 5.84512 5.89478 5.95945 6.03258 6.05826 6.16755 6.48019 6.64314 6.81308 7.54562 7.95932 8.13674 8.43596 8.50209 9.19238 10.82076 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.002984 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.675972 B = 9379.875143 C =10795.103295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.140 3.860 4 C 0.018 3.982 5 H 0.086 0.914 6 C -0.139 4.139 7 C 0.009 3.991 8 N -0.465 5.465 9 C 0.112 3.888 10 C 0.015 3.985 11 C -0.007 4.007 12 N -0.293 5.293 13 N -0.163 5.163 14 C 0.110 3.890 15 N -0.286 5.286 16 C 0.529 3.471 17 O -0.522 6.522 18 C -0.120 4.120 19 S -0.145 6.145 20 C -0.519 4.519 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.198 0.802 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 25.704 8.750 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.349 5.349 3 C 0.016 3.984 4 C -0.092 4.092 5 H 0.104 0.896 6 C -0.177 4.177 7 C -0.120 4.120 8 N -0.188 5.188 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.190 4.190 12 N -0.134 5.134 13 N -0.063 5.063 14 C -0.030 4.030 15 N -0.129 5.129 16 C 0.316 3.684 17 O -0.397 6.397 18 C -0.270 4.270 19 S 0.081 5.919 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.214 0.786 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.424 26.207 9.627 28.128 hybrid contribution -0.089 -1.121 -0.076 1.127 sum -3.513 25.086 9.551 27.072 Atomic orbital electron populations 1.21865 0.79237 1.03807 1.01595 1.47717 1.07088 1.05202 1.74914 1.21296 0.97994 0.84997 0.94096 1.23955 0.91986 0.96587 0.96679 0.89564 1.23375 1.00383 0.95440 0.98515 1.23767 0.97183 0.94583 0.96446 1.68543 1.32131 1.02703 1.15442 1.20823 0.93512 0.96644 0.90841 1.22894 0.96570 1.00192 0.95164 1.24646 0.92213 1.03837 0.98280 1.74067 1.22792 1.09816 1.06677 1.47858 1.02000 1.35349 1.21113 1.22071 1.04025 0.96163 0.80735 1.73966 1.08266 1.20368 1.10293 1.20331 0.87918 0.84762 0.75359 1.90684 1.13734 1.86912 1.48326 1.23303 1.02988 0.95235 1.05512 1.84777 1.12088 0.97626 1.97408 1.22310 0.94873 0.90882 1.58605 0.89405 1.24710 0.98474 0.94899 0.93233 1.69939 1.34775 0.98869 1.48196 0.86743 0.85465 0.79808 0.79888 1.19272 1.19999 1.15888 0.93074 0.89791 0.91122 0.89418 0.90171 0.90794 0.89015 0.91028 0.89997 0.88250 0.92476 0.78561 0.89420 0.88141 0.88036 0.88691 0.88580 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.83 59.85 0.59 1.38 16 2 N -0.61 -7.86 2.82 -181.57 -0.51 -8.38 16 3 C 0.14 1.52 5.54 -4.04 -0.02 1.49 16 4 C 0.02 0.18 3.57 -66.66 -0.24 -0.05 16 5 H 0.09 1.04 7.80 -51.93 -0.40 0.63 16 6 C -0.14 -1.08 7.84 -25.80 -0.20 -1.28 16 7 C 0.01 0.08 7.43 -2.77 -0.02 0.06 16 8 N -0.46 -4.58 4.97 -232.15 -1.15 -5.74 16 9 C 0.11 1.24 5.41 -4.98 -0.03 1.21 16 10 C 0.01 0.17 6.40 -82.25 -0.53 -0.35 16 11 C -0.01 -0.08 12.16 -17.21 -0.21 -0.29 16 12 N -0.29 -3.46 12.05 30.67 0.37 -3.09 16 13 N -0.16 -1.71 4.35 -16.64 -0.07 -1.79 16 14 C 0.11 0.58 11.57 59.85 0.69 1.28 16 15 N -0.29 -3.36 12.00 33.71 0.40 -2.96 16 16 C 0.53 9.22 7.69 -10.98 -0.08 9.13 16 17 O -0.52 -10.92 15.44 5.56 0.09 -10.83 16 18 C -0.12 -2.30 4.71 36.01 0.17 -2.13 16 19 S -0.15 -3.67 18.55 -107.50 -1.99 -5.66 16 20 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 21 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 24 Si 0.86 21.82 27.74 -169.99 -4.71 17.11 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.23 -5.97 6.74 56.52 0.38 -5.59 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.75 7.25 -51.93 -0.38 0.38 16 30 H 0.07 0.72 6.44 -51.93 -0.33 0.38 16 31 H 0.09 1.07 7.42 -51.93 -0.39 0.68 16 32 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.07 0.67 7.78 -51.93 -0.40 0.27 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 39 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 44 H 0.10 1.75 8.11 -51.92 -0.42 1.33 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -35.95 387.38 -7.52 -43.47 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.88 Total: -0.70 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.33 Total: -1.44 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.19 Total: -47.79 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.95 -7.52 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.388 kcal (2) G-P(sol) polarization free energy of solvation -35.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds