Wall clock time and date at job start Tue Mar 31 2020 22:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08993 * 112.96042 * 72.85831 * 4 3 2 6 6 C 1.53938 * 113.75639 * 204.50624 * 4 3 2 7 7 C 1.53932 * 86.34323 * 138.03736 * 6 4 3 8 8 N 1.47960 * 113.75771 * 301.06174 * 4 3 2 9 9 C 1.46901 * 110.99711 * 108.10558 * 8 4 3 10 10 C 1.50697 * 109.47321 * 170.00171 * 9 8 4 11 11 C 1.39678 * 127.05062 * 94.99638 * 10 9 8 12 12 N 1.31378 * 105.89988 * 179.97438 * 11 10 9 13 13 N 1.28605 * 108.71826 * 359.97438 * 12 11 10 14 14 C 1.46498 * 124.62047 * 180.02562 * 13 12 11 15 15 N 1.28599 * 110.76293 * 359.75286 * 13 12 11 16 16 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 17 17 O 1.21279 * 120.00410 * 179.97438 * 16 2 1 18 18 C 1.50703 * 119.99541 * 359.97438 * 16 2 1 19 19 S 1.81004 * 109.46790 * 180.02562 * 18 16 2 20 20 C 1.76197 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00243 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00041 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99629 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99851 * 24 22 20 26 26 H 1.48504 * 109.47049 * 209.99718 * 24 22 20 27 27 H 1.48500 * 109.47362 * 330.00074 * 24 22 20 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09000 * 113.73352 * 252.39461 * 6 4 3 34 34 H 1.09001 * 113.73365 * 23.56856 * 6 4 3 35 35 H 1.09002 * 113.75955 * 90.59045 * 7 6 4 36 36 H 1.08995 * 113.76221 * 221.85632 * 7 6 4 37 37 H 1.09004 * 109.46500 * 289.99863 * 9 8 4 38 38 H 1.08995 * 109.47239 * 49.99638 * 9 8 4 39 39 H 1.07998 * 127.05079 * 359.97438 * 11 10 9 40 40 H 1.09002 * 109.47282 * 89.97244 * 14 13 12 41 41 H 1.09000 * 109.47280 * 209.98169 * 14 13 12 42 42 H 1.09006 * 109.46840 * 329.97769 * 14 13 12 43 43 H 1.08996 * 109.47057 * 299.99739 * 18 16 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 18 16 2 45 45 H 0.97006 * 120.00094 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 3.2145 1.1120 1.9419 6 6 2.6542 3.2283 1.5999 7 6 1.7733 3.1154 2.8571 8 7 1.2180 1.8919 2.2374 9 6 1.0690 0.8198 3.2306 10 6 -0.0525 1.1637 4.1766 11 6 -1.3851 0.7550 4.0860 12 7 -1.9965 1.2896 5.1187 13 7 -1.1417 1.9688 5.7983 14 6 -1.4523 2.7102 7.0230 15 7 0.0241 1.9040 5.2594 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0020 22 6 1.9282 -6.5081 -0.0020 23 7 1.0915 -7.5241 -0.0021 24 14 3.7708 -6.8154 -0.0015 25 1 4.2585 -6.8978 1.3987 26 1 4.0598 -8.0924 -0.7023 27 1 4.4588 -5.7004 -0.7004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 3.6846 3.5145 1.8105 34 1 2.2054 3.8159 0.7989 35 1 2.3356 2.9279 3.7719 36 1 1.0501 3.9242 2.9608 37 1 0.8412 -0.1171 2.7224 38 1 1.9974 0.7126 3.7915 39 1 -1.8230 0.1281 3.3234 40 1 -1.3124 2.0600 7.8867 41 1 -0.7888 3.5710 7.1049 42 1 -2.4871 3.0510 6.9888 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 1.4316 -8.4326 -0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:18 Heat of formation + Delta-G solvation = 95.634289 kcal Electronic energy + Delta-G solvation = -27308.893719 eV Core-core repulsion = 23491.176569 eV Total energy + Delta-G solvation = -3817.717150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.53080 -41.39964 -40.19647 -36.39350 -35.19621 -34.65574 -33.67043 -32.13693 -31.35920 -29.21195 -28.27234 -27.83676 -27.20618 -25.53492 -24.38481 -23.22196 -21.81900 -20.89284 -20.37430 -19.47244 -18.22928 -18.04145 -17.82205 -17.31379 -17.12686 -17.02781 -16.69558 -16.05097 -15.90759 -15.64392 -15.36607 -14.91807 -14.64073 -14.49684 -14.24264 -13.94524 -13.87144 -13.61574 -13.49395 -13.33683 -13.17319 -13.01014 -12.79958 -12.68061 -12.62917 -12.47686 -12.39078 -11.89428 -11.83703 -11.82681 -11.66032 -11.27478 -11.15906 -10.84457 -10.49309 -10.18582 -9.95709 -9.44649 -8.97278 -8.50163 -6.20154 0.77978 1.01081 1.31624 1.36968 1.47756 1.50049 1.56948 1.61036 2.16933 2.26156 2.71771 2.88253 2.93455 3.15742 3.50804 3.67077 3.74195 3.86990 4.14089 4.19384 4.21588 4.23879 4.28506 4.38104 4.39868 4.42770 4.51264 4.52504 4.54243 4.56492 4.71488 4.77688 4.80722 4.93210 4.98526 5.01958 5.08542 5.20105 5.28518 5.33902 5.63000 5.72508 5.75936 5.98221 6.13271 6.36860 6.95437 7.18356 7.30996 8.62302 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.002984 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.675972 B = 9379.875143 C =10795.103295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.598 5.598 3 C 0.139 3.861 4 C 0.016 3.984 5 H 0.062 0.938 6 C -0.121 4.121 7 C 0.011 3.989 8 N -0.459 5.459 9 C 0.119 3.881 10 C 0.003 3.997 11 C -0.017 4.017 12 N -0.309 5.309 13 N -0.161 5.161 14 C 0.097 3.903 15 N -0.298 5.298 16 C 0.531 3.469 17 O -0.563 6.563 18 C -0.105 4.105 19 S -0.178 6.178 20 C -0.525 4.525 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.918 5.918 24 Si 0.913 3.087 25 H -0.264 1.264 26 H -0.260 1.260 27 H -0.236 1.236 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.214 0.786 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 28.059 8.804 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C 0.016 3.984 4 C -0.095 4.095 5 H 0.081 0.919 6 C -0.159 4.159 7 C -0.117 4.117 8 N -0.183 5.183 9 C -0.011 4.011 10 C -0.159 4.159 11 C -0.199 4.199 12 N -0.151 5.151 13 N -0.063 5.063 14 C -0.042 4.042 15 N -0.142 5.142 16 C 0.318 3.682 17 O -0.442 6.442 18 C -0.256 4.256 19 S 0.048 5.952 20 C -0.673 4.673 21 H 0.080 0.920 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.184 1.184 27 H -0.160 1.160 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.231 0.769 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.713 28.601 9.684 30.424 hybrid contribution -0.165 -1.683 -0.017 1.691 sum -3.878 26.919 9.667 28.864 Atomic orbital electron populations 1.22084 0.77169 1.04684 1.02891 1.47705 1.08308 1.04499 1.72584 1.21493 0.97777 0.84312 0.94786 1.23854 0.91611 0.98116 0.95902 0.91947 1.23342 1.00969 0.93430 0.98208 1.23736 0.97356 0.93980 0.96664 1.68545 1.31872 1.02665 1.15218 1.20681 0.92845 0.96736 0.90844 1.22944 0.96814 1.00695 0.95446 1.24983 0.92160 1.04076 0.98702 1.74044 1.23407 1.10451 1.07149 1.48388 1.01394 1.34811 1.21695 1.22520 1.05569 0.96673 0.79391 1.73930 1.09030 1.20740 1.10541 1.19985 0.87241 0.85324 0.75671 1.90671 1.15246 1.87431 1.50860 1.23282 1.01679 0.93809 1.06832 1.84696 1.13918 0.99011 1.97544 1.22451 0.94394 0.92469 1.57939 0.91953 1.25548 1.02626 0.94814 0.92996 1.70017 1.36736 0.99512 1.49359 0.85886 0.80399 0.80077 0.80136 1.18830 1.18423 1.15985 0.91470 0.88067 0.91185 0.90733 0.87138 0.89802 0.87205 0.91828 0.89646 0.89093 0.93832 0.76908 0.88135 0.86469 0.86331 0.87270 0.87350 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 9.83 127.77 1.26 2.55 16 2 N -0.60 -14.25 2.82 -846.74 -2.39 -16.64 16 3 C 0.14 2.72 5.54 86.38 0.48 3.20 16 4 C 0.02 0.29 3.57 45.02 0.16 0.45 16 5 H 0.06 1.50 7.80 -2.39 -0.02 1.48 16 6 C -0.12 -1.57 7.84 31.24 0.25 -1.33 16 7 C 0.01 0.18 7.43 86.40 0.64 0.82 16 8 N -0.46 -8.30 4.97 -888.39 -4.42 -12.72 16 9 C 0.12 2.58 5.41 85.56 0.46 3.04 16 10 C 0.00 0.07 6.40 42.97 0.27 0.35 16 11 C -0.02 -0.37 12.16 85.11 1.03 0.66 16 12 N -0.31 -6.95 12.05 -56.87 -0.69 -7.64 16 13 N -0.16 -3.18 4.35 -206.55 -0.90 -4.08 16 14 C 0.10 0.86 11.57 127.77 1.48 2.33 16 15 N -0.30 -6.75 12.00 -47.25 -0.57 -7.31 16 16 C 0.53 18.09 7.69 87.66 0.67 18.77 16 17 O -0.56 -23.59 15.44 -3.02 -0.05 -23.64 16 18 C -0.11 -3.97 4.71 71.24 0.34 -3.63 16 19 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 20 C -0.52 -30.57 10.04 67.95 0.68 -29.88 16 21 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 22 C 0.05 2.67 5.50 84.86 0.47 3.14 16 23 N -0.92 -56.16 13.97 21.65 0.30 -55.86 16 24 Si 0.91 45.26 27.74 68.60 1.90 47.17 16 25 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.49 7.25 -2.39 -0.02 1.47 16 30 H 0.07 1.27 6.44 -2.38 -0.02 1.26 16 31 H 0.07 1.72 7.42 -2.39 -0.02 1.70 16 32 H 0.11 1.54 7.84 -2.38 -0.02 1.53 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.09 7.94 -2.39 -0.02 1.07 16 35 H 0.06 1.13 7.78 -2.39 -0.02 1.12 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 2.09 7.93 -2.38 -0.02 2.07 16 38 H 0.04 1.05 7.69 -2.39 -0.02 1.03 16 39 H 0.21 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.11 3.81 7.40 -2.40 -0.02 3.79 16 44 H 0.11 3.83 8.11 -2.40 -0.02 3.81 16 45 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -78.49 387.38 1.29 -77.20 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.95 Total: 13.12 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 8.19 Total: 0.47 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -8.66 Total: -104.25 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -78.49 1.29 -77.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.832 kcal (2) G-P(sol) polarization free energy of solvation -78.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds