Wall clock time and date at job start Tue Mar 31 2020 22:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 120.00193 * 2 1 4 4 C 1.52994 * 109.47078 * 270.00093 * 3 2 1 5 5 H 1.09007 * 112.79163 * 75.80651 * 4 3 2 6 6 C 1.53512 * 113.47769 * 206.61946 * 4 3 2 7 7 C 1.53508 * 83.57859 * 140.79009 * 6 4 3 8 8 N 1.47485 * 113.47561 * 304.99941 * 4 3 2 9 9 C 1.46899 * 110.99890 * 106.52964 * 8 4 3 10 10 C 1.50706 * 109.46789 * 187.49572 * 9 8 4 11 11 C 1.35352 * 126.74645 * 95.00080 * 10 9 8 12 12 N 1.35314 * 106.17167 * 180.02562 * 11 10 9 13 13 C 1.46504 * 125.86866 * 179.97438 * 12 11 10 14 14 N 1.28713 * 108.26631 * 0.02562 * 12 11 10 15 15 N 1.28642 * 110.17395 * 359.72098 * 14 12 11 16 16 C 1.34773 * 119.99726 * 179.97438 * 2 1 3 17 17 O 1.21281 * 119.99666 * 179.97438 * 16 2 1 18 18 C 1.50699 * 120.00376 * 359.97438 * 16 2 1 19 19 S 1.81000 * 109.47313 * 179.97438 * 18 16 2 20 20 C 1.76199 * 99.99794 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00229 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99707 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00121 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99748 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46798 * 90.00663 * 24 22 20 26 26 H 1.48503 * 109.47198 * 210.00303 * 24 22 20 27 27 H 1.48496 * 109.47201 * 330.00453 * 24 22 20 28 28 H 1.08997 * 109.47011 * 90.00026 * 1 2 3 29 29 H 1.08993 * 109.47504 * 210.00103 * 1 2 3 30 30 H 1.09001 * 109.47131 * 330.00380 * 1 2 3 31 31 H 1.08994 * 109.47134 * 149.99873 * 3 2 1 32 32 H 1.09000 * 109.46992 * 29.99588 * 3 2 1 33 33 H 1.08998 * 114.16786 * 27.13751 * 6 4 3 34 34 H 1.09008 * 114.34053 * 254.44778 * 6 4 3 35 35 H 1.09004 * 113.47728 * 219.21185 * 7 6 4 36 36 H 1.08999 * 113.53200 * 88.75186 * 7 6 4 37 37 H 1.08999 * 109.47030 * 67.49942 * 9 8 4 38 38 H 1.08998 * 109.47294 * 307.49922 * 9 8 4 39 39 H 1.08001 * 126.91713 * 359.96833 * 11 10 9 40 40 H 1.09005 * 109.46648 * 89.99916 * 13 12 11 41 41 H 1.08996 * 109.47189 * 209.99941 * 13 12 11 42 42 H 1.09003 * 109.46763 * 330.00305 * 13 12 11 43 43 H 1.08996 * 109.47065 * 300.00661 * 18 16 2 44 44 H 1.09010 * 109.46469 * 59.99767 * 18 16 2 45 45 H 0.96998 * 119.99746 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 1 1.5630 2.1183 -1.9227 6 6 3.6943 2.5992 -1.5995 7 6 3.8978 1.7907 -2.8884 8 7 3.1443 0.6924 -2.2550 9 6 2.2219 0.0665 -3.2117 10 6 2.9112 -1.0880 -3.8923 11 6 2.8520 -2.3918 -3.5336 12 7 3.6202 -3.0626 -4.4230 13 6 3.8585 -4.5081 -4.4330 14 7 4.1065 -2.2123 -5.2580 15 7 3.6982 -1.0264 -4.9721 16 6 2.1388 -1.1672 0.0005 17 8 3.3517 -1.1672 0.0001 18 6 1.3854 -2.4723 0.0017 19 16 2.5615 -3.8481 0.0014 20 6 1.4414 -5.2082 0.0021 21 1 0.3762 -5.0304 0.0021 22 6 1.9281 -6.5081 0.0015 23 7 3.2265 -6.7247 0.0010 24 14 0.7406 -7.9500 0.0016 25 1 0.4256 -8.3318 -1.3985 26 1 1.3621 -9.1031 0.7011 27 1 -0.5098 -7.5615 0.7020 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.1499 1.1384 0.5138 32 1 1.6085 2.0284 0.5138 33 1 4.4607 2.4330 -0.8425 34 1 3.4739 3.6540 -1.7644 35 1 4.9410 1.5441 -3.0861 36 1 3.3945 2.2193 -3.7550 37 1 1.9198 0.8007 -3.9586 38 1 1.3410 -0.2970 -2.6825 39 1 2.3030 -2.8121 -2.7040 40 1 3.0995 -4.9971 -5.0436 41 1 4.8454 -4.7107 -4.8489 42 1 3.8078 -4.8917 -3.4140 43 1 0.7590 -2.5294 0.8919 44 1 0.7583 -2.5305 -0.8881 45 1 3.5666 -7.6331 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:35 Heat of formation + Delta-G solvation = 114.598724 kcal Electronic energy + Delta-G solvation = -28603.258480 eV Core-core repulsion = 24786.363690 eV Total energy + Delta-G solvation = -3816.894790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79574 -40.41802 -38.74956 -35.09340 -34.38922 -32.53467 -32.39593 -30.34496 -29.20152 -27.93237 -27.48889 -26.17803 -25.55094 -24.62461 -23.16008 -21.59969 -20.73655 -19.70841 -19.10312 -17.69643 -16.92444 -16.50555 -16.31203 -16.01763 -15.74449 -15.60366 -14.89899 -14.73273 -14.51527 -14.13873 -13.91877 -13.33083 -13.24340 -12.94092 -12.92257 -12.81365 -12.70096 -12.58471 -12.32997 -12.00045 -11.86219 -11.57747 -11.45174 -11.15855 -11.15296 -11.10798 -10.99825 -10.84280 -10.57235 -10.38894 -9.88859 -9.63814 -9.17153 -9.16332 -8.88664 -8.69683 -8.30890 -8.25907 -6.60924 -6.32351 -4.03378 2.06347 2.78080 2.87695 2.96303 3.12657 3.20292 3.23098 3.26247 3.57945 4.11350 4.15794 4.45092 4.66093 4.82523 4.87300 4.92144 5.02644 5.13484 5.15010 5.16398 5.27995 5.33689 5.35617 5.40248 5.44179 5.47809 5.57054 5.61659 5.70494 5.71737 5.74892 5.84646 5.86687 5.90040 5.99184 6.08389 6.14104 6.19974 6.44975 6.51998 6.80096 7.02228 7.16448 7.49832 7.69359 8.25071 8.76670 8.90707 9.13580 10.74185 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.004664 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.018545 B = 6002.503072 C = 7801.777382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.624 5.624 3 C 0.137 3.863 4 C 0.009 3.991 5 H 0.074 0.926 6 C -0.137 4.137 7 C 0.003 3.997 8 N -0.435 5.435 9 C 0.115 3.885 10 C -0.025 4.025 11 C -0.004 4.004 12 N -0.287 5.287 13 C 0.079 3.921 14 N -0.103 5.103 15 N -0.271 5.271 16 C 0.531 3.469 17 O -0.488 6.488 18 C -0.154 4.154 19 S -0.055 6.055 20 C -0.537 4.537 21 H 0.071 0.929 22 C 0.077 3.923 23 N -0.867 5.867 24 Si 0.913 3.087 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.193 0.807 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 14.657 -3.886 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.361 5.361 3 C 0.014 3.986 4 C -0.102 4.102 5 H 0.092 0.908 6 C -0.175 4.175 7 C -0.126 4.126 8 N -0.157 5.157 9 C -0.015 4.015 10 C -0.164 4.164 11 C -0.156 4.156 12 N -0.079 5.079 13 C -0.062 4.062 14 N -0.083 5.083 15 N -0.139 5.139 16 C 0.318 3.682 17 O -0.360 6.360 18 C -0.304 4.304 19 S 0.172 5.828 20 C -0.686 4.686 21 H 0.089 0.911 22 C -0.132 4.132 23 N -0.502 5.502 24 Si 0.740 3.260 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.210 0.790 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.677 14.047 -4.830 15.093 hybrid contribution -3.525 -0.871 0.507 3.666 sum -6.203 13.176 -4.323 15.191 Atomic orbital electron populations 1.21745 0.80355 1.02955 1.01275 1.47743 1.06168 1.05814 1.76378 1.21359 0.98112 0.84646 0.94525 1.23840 0.96650 0.92976 0.96718 0.90781 1.23161 0.97755 0.97780 0.98801 1.23749 1.01355 0.91700 0.95789 1.69088 1.15607 1.17338 1.13708 1.20706 0.94190 0.93048 0.93562 1.21431 1.03847 0.94051 0.97022 1.23700 1.00901 0.92759 0.98268 1.47108 1.31208 1.10059 1.19560 1.22362 1.03929 0.73048 1.06854 1.78159 1.20311 0.93727 1.16068 1.74873 1.11752 1.13287 1.13969 1.20070 0.88038 0.84139 0.75991 1.90728 1.13240 1.86301 1.45697 1.23627 1.04481 0.97986 1.04347 1.85446 1.07908 0.93090 1.96404 1.22899 0.94420 0.92330 1.58906 0.91075 1.24943 0.95547 0.98232 0.94521 1.70013 1.11623 1.21674 1.46902 0.86252 0.80482 0.80946 0.78365 1.20311 1.20750 1.19693 0.93351 0.90891 0.91549 0.89313 0.90832 0.88679 0.90839 0.89888 0.91525 0.92785 0.89916 0.78976 0.89525 0.88578 0.86640 0.89532 0.89991 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.29 59.85 0.62 1.38 16 2 N -0.62 -8.16 2.61 -181.58 -0.47 -8.63 16 3 C 0.14 1.56 5.63 -4.04 -0.02 1.54 16 4 C 0.01 0.10 3.36 -71.43 -0.24 -0.14 16 5 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 6 C -0.14 -1.35 8.00 -26.20 -0.21 -1.56 16 7 C 0.00 0.04 7.69 -7.54 -0.06 -0.02 16 8 N -0.44 -6.24 4.92 -237.92 -1.17 -7.41 16 9 C 0.12 1.65 5.34 -4.97 -0.03 1.63 16 10 C -0.03 -0.44 6.81 -82.78 -0.56 -1.00 16 11 C 0.00 -0.06 11.55 -17.05 -0.20 -0.26 16 12 N -0.29 -5.02 3.74 -68.05 -0.25 -5.27 16 13 C 0.08 1.11 11.39 59.85 0.68 1.79 16 14 N -0.10 -1.94 13.17 60.35 0.79 -1.15 16 15 N -0.27 -5.13 12.41 33.29 0.41 -4.72 16 16 C 0.53 9.40 7.18 -10.99 -0.08 9.32 16 17 O -0.49 -10.59 14.87 5.56 0.08 -10.51 16 18 C -0.15 -2.88 4.61 36.01 0.17 -2.71 16 19 S -0.06 -1.37 20.16 -107.50 -2.17 -3.53 16 20 C -0.54 -14.02 9.50 30.94 0.29 -13.73 16 21 H 0.07 1.78 7.80 -52.49 -0.41 1.37 16 22 C 0.08 2.03 5.49 -17.43 -0.10 1.93 16 23 N -0.87 -24.13 13.22 55.49 0.73 -23.40 16 24 Si 0.91 20.05 29.55 -169.99 -5.02 15.03 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H 0.05 0.42 8.12 -51.93 -0.42 -0.01 16 29 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 30 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 31 H 0.09 1.22 7.15 -51.93 -0.37 0.84 16 32 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 33 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 34 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.75 7.44 -51.93 -0.39 0.36 16 37 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 38 H 0.08 1.13 7.88 -51.93 -0.41 0.72 16 39 H 0.19 3.60 7.54 -52.49 -0.40 3.21 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 43 H 0.09 1.54 7.40 -51.92 -0.38 1.16 16 44 H 0.08 1.41 8.11 -51.91 -0.42 0.99 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -33.90 388.70 -7.75 -41.65 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.81 Total: 3.93 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 0.26 Total: -1.84 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.04 Total: -50.58 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.17 Total: -3.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.90 -7.75 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.244 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds