Wall clock time and date at job start Tue Mar 31 2020 22:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 120.00193 * 2 1 4 4 C 1.52994 * 109.47078 * 270.00093 * 3 2 1 5 5 H 1.09007 * 112.79163 * 75.80651 * 4 3 2 6 6 C 1.53512 * 113.47769 * 206.61946 * 4 3 2 7 7 C 1.53508 * 83.57859 * 140.79009 * 6 4 3 8 8 N 1.47485 * 113.47561 * 304.99941 * 4 3 2 9 9 C 1.46899 * 110.99890 * 106.52964 * 8 4 3 10 10 C 1.50706 * 109.46789 * 187.49572 * 9 8 4 11 11 C 1.35352 * 126.74645 * 95.00080 * 10 9 8 12 12 N 1.35314 * 106.17167 * 180.02562 * 11 10 9 13 13 C 1.46504 * 125.86866 * 179.97438 * 12 11 10 14 14 N 1.28713 * 108.26631 * 0.02562 * 12 11 10 15 15 N 1.28642 * 110.17395 * 359.72098 * 14 12 11 16 16 C 1.34773 * 119.99726 * 179.97438 * 2 1 3 17 17 O 1.21281 * 119.99666 * 179.97438 * 16 2 1 18 18 C 1.50699 * 120.00376 * 359.97438 * 16 2 1 19 19 S 1.81000 * 109.47313 * 179.97438 * 18 16 2 20 20 C 1.76199 * 99.99794 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00229 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99707 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00121 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99748 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46798 * 90.00663 * 24 22 20 26 26 H 1.48503 * 109.47198 * 210.00303 * 24 22 20 27 27 H 1.48496 * 109.47201 * 330.00453 * 24 22 20 28 28 H 1.08997 * 109.47011 * 90.00026 * 1 2 3 29 29 H 1.08993 * 109.47504 * 210.00103 * 1 2 3 30 30 H 1.09001 * 109.47131 * 330.00380 * 1 2 3 31 31 H 1.08994 * 109.47134 * 149.99873 * 3 2 1 32 32 H 1.09000 * 109.46992 * 29.99588 * 3 2 1 33 33 H 1.08998 * 114.16786 * 27.13751 * 6 4 3 34 34 H 1.09008 * 114.34053 * 254.44778 * 6 4 3 35 35 H 1.09004 * 113.47728 * 219.21185 * 7 6 4 36 36 H 1.08999 * 113.53200 * 88.75186 * 7 6 4 37 37 H 1.08999 * 109.47030 * 67.49942 * 9 8 4 38 38 H 1.08998 * 109.47294 * 307.49922 * 9 8 4 39 39 H 1.08001 * 126.91713 * 359.96833 * 11 10 9 40 40 H 1.09005 * 109.46648 * 89.99916 * 13 12 11 41 41 H 1.08996 * 109.47189 * 209.99941 * 13 12 11 42 42 H 1.09003 * 109.46763 * 330.00305 * 13 12 11 43 43 H 1.08996 * 109.47065 * 300.00661 * 18 16 2 44 44 H 1.09010 * 109.46469 * 59.99767 * 18 16 2 45 45 H 0.96998 * 119.99746 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 1 1.5630 2.1183 -1.9227 6 6 3.6943 2.5992 -1.5995 7 6 3.8978 1.7907 -2.8884 8 7 3.1443 0.6924 -2.2550 9 6 2.2219 0.0665 -3.2117 10 6 2.9112 -1.0880 -3.8923 11 6 2.8520 -2.3918 -3.5336 12 7 3.6202 -3.0626 -4.4230 13 6 3.8585 -4.5081 -4.4330 14 7 4.1065 -2.2123 -5.2580 15 7 3.6982 -1.0264 -4.9721 16 6 2.1388 -1.1672 0.0005 17 8 3.3517 -1.1672 0.0001 18 6 1.3854 -2.4723 0.0017 19 16 2.5615 -3.8481 0.0014 20 6 1.4414 -5.2082 0.0021 21 1 0.3762 -5.0304 0.0021 22 6 1.9281 -6.5081 0.0015 23 7 3.2265 -6.7247 0.0010 24 14 0.7406 -7.9500 0.0016 25 1 0.4256 -8.3318 -1.3985 26 1 1.3621 -9.1031 0.7011 27 1 -0.5098 -7.5615 0.7020 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.1499 1.1384 0.5138 32 1 1.6085 2.0284 0.5138 33 1 4.4607 2.4330 -0.8425 34 1 3.4739 3.6540 -1.7644 35 1 4.9410 1.5441 -3.0861 36 1 3.3945 2.2193 -3.7550 37 1 1.9198 0.8007 -3.9586 38 1 1.3410 -0.2970 -2.6825 39 1 2.3030 -2.8121 -2.7040 40 1 3.0995 -4.9971 -5.0436 41 1 4.8454 -4.7107 -4.8489 42 1 3.8078 -4.8917 -3.4140 43 1 0.7590 -2.5294 0.8919 44 1 0.7583 -2.5305 -0.8881 45 1 3.5666 -7.6331 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:33 Heat of formation + Delta-G solvation = 90.650617 kcal Electronic energy + Delta-G solvation = -28604.296948 eV Core-core repulsion = 24786.363690 eV Total energy + Delta-G solvation = -3817.933258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.17771 -41.42318 -39.98442 -36.28229 -35.69080 -34.53625 -33.61032 -31.60210 -30.40950 -29.03717 -28.74122 -27.61139 -27.07232 -25.73322 -24.16594 -22.97736 -22.01688 -20.71971 -20.34091 -19.40465 -18.19373 -17.81030 -17.60592 -17.12523 -16.88888 -16.83454 -16.68677 -16.01985 -15.90457 -15.52711 -15.28140 -14.54146 -14.39032 -14.28741 -14.10859 -14.00263 -13.88454 -13.74159 -13.33404 -13.13639 -13.06214 -13.01522 -12.88921 -12.68315 -12.50406 -12.41589 -12.28865 -12.06576 -11.72302 -11.67762 -11.42968 -11.10536 -10.98135 -10.57794 -10.17323 -10.14364 -9.78684 -9.30701 -8.58492 -8.30215 -6.06005 0.65560 1.31474 1.41537 1.45094 1.49490 1.57419 1.60562 1.89835 2.26508 2.34028 3.03729 3.16607 3.35624 3.45822 3.57890 3.72697 3.89982 3.92363 4.03233 4.15822 4.25138 4.28045 4.31619 4.35505 4.41160 4.44640 4.52766 4.54015 4.56637 4.61244 4.68217 4.79957 4.83760 4.92968 5.01655 5.03839 5.06324 5.17054 5.32525 5.46949 5.49149 5.66992 5.83264 6.21671 6.24267 6.53637 7.12247 7.47437 7.49422 8.77427 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.004664 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.018545 B = 6002.503072 C = 7801.777382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.612 5.612 3 C 0.134 3.866 4 C 0.016 3.984 5 H 0.104 0.896 6 C -0.120 4.120 7 C 0.000 4.000 8 N -0.473 5.473 9 C 0.120 3.880 10 C -0.021 4.021 11 C -0.022 4.022 12 N -0.285 5.285 13 C 0.076 3.924 14 N -0.118 5.118 15 N -0.290 5.290 16 C 0.533 3.467 17 O -0.538 6.538 18 C -0.130 4.130 19 S -0.127 6.127 20 C -0.544 4.544 21 H 0.077 0.923 22 C 0.026 3.974 23 N -0.906 5.906 24 Si 0.983 3.017 25 H -0.266 1.266 26 H -0.283 1.283 27 H -0.264 1.264 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.184 0.816 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 16.445 -3.941 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.347 5.347 3 C 0.011 3.989 4 C -0.094 4.094 5 H 0.122 0.878 6 C -0.158 4.158 7 C -0.129 4.129 8 N -0.196 5.196 9 C -0.010 4.010 10 C -0.160 4.160 11 C -0.176 4.176 12 N -0.078 5.078 13 C -0.064 4.064 14 N -0.098 5.098 15 N -0.157 5.157 16 C 0.319 3.681 17 O -0.414 6.414 18 C -0.281 4.281 19 S 0.100 5.900 20 C -0.692 4.692 21 H 0.095 0.905 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.806 3.194 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.188 1.188 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.201 0.799 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.618 15.876 -4.891 17.536 hybrid contribution -2.640 -1.326 0.551 3.005 sum -8.258 14.550 -4.340 17.284 Atomic orbital electron populations 1.22053 0.77632 1.04563 1.02811 1.47706 1.07814 1.04895 1.74245 1.21567 0.97504 0.84512 0.95268 1.23919 0.97815 0.91873 0.95749 0.87841 1.23067 0.96794 0.99256 0.96645 1.23774 0.99756 0.91880 0.97516 1.69075 1.16853 1.19122 1.14541 1.20777 0.93973 0.92369 0.93927 1.22003 1.02892 0.94856 0.96270 1.23711 1.01836 0.93397 0.98617 1.47357 1.30503 1.10938 1.19028 1.22537 1.06008 0.71619 1.06192 1.78088 1.20868 0.94111 1.16708 1.74838 1.12552 1.13440 1.14897 1.19849 0.87332 0.85000 0.75921 1.90717 1.15218 1.86997 1.48478 1.23459 1.02899 0.96267 1.05524 1.85613 1.11537 0.96179 1.96659 1.23171 0.94630 0.92908 1.58478 0.90526 1.25866 0.97113 1.01041 0.93966 1.70162 1.13677 1.22233 1.48152 0.85170 0.78261 0.77125 0.78808 1.19156 1.20827 1.18774 0.91765 0.91373 0.87989 0.92252 0.86494 0.90066 0.87438 0.92735 0.90095 0.91171 0.89305 0.79889 0.86864 0.86788 0.88747 0.88453 0.88364 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 10.29 127.77 1.31 2.38 16 2 N -0.61 -14.49 2.61 -846.78 -2.21 -16.70 16 3 C 0.13 2.67 5.63 86.38 0.49 3.15 16 4 C 0.02 0.31 3.36 42.19 0.14 0.45 16 5 H 0.10 1.38 7.91 -2.38 -0.02 1.36 16 6 C -0.12 -2.07 8.00 30.94 0.25 -1.82 16 7 C 0.00 -0.01 7.69 83.58 0.64 0.64 16 8 N -0.47 -13.05 4.92 -906.64 -4.46 -17.51 16 9 C 0.12 3.27 5.34 85.56 0.46 3.73 16 10 C -0.02 -0.74 6.81 41.60 0.28 -0.46 16 11 C -0.02 -0.84 11.55 83.49 0.96 0.13 16 12 N -0.29 -10.22 3.74 -369.22 -1.38 -11.60 16 13 C 0.08 2.20 11.39 127.77 1.46 3.65 16 14 N -0.12 -4.54 13.17 37.02 0.49 -4.05 16 15 N -0.29 -11.10 12.41 -48.60 -0.60 -11.71 16 16 C 0.53 18.62 7.18 87.66 0.63 19.25 16 17 O -0.54 -24.02 14.87 -3.03 -0.05 -24.07 16 18 C -0.13 -4.84 4.61 71.24 0.33 -4.51 16 19 S -0.13 -6.48 20.16 -56.49 -1.14 -7.62 16 20 C -0.54 -28.69 9.50 67.96 0.65 -28.04 16 21 H 0.08 3.81 7.80 -2.91 -0.02 3.79 16 22 C 0.03 1.36 5.49 84.86 0.47 1.82 16 23 N -0.91 -51.75 13.22 21.65 0.29 -51.46 16 24 Si 0.98 41.02 29.55 68.60 2.03 43.05 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 28 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 29 H 0.07 1.12 6.44 -2.39 -0.02 1.10 16 30 H 0.10 0.87 7.89 -2.39 -0.02 0.85 16 31 H 0.06 1.57 7.15 -2.39 -0.02 1.55 16 32 H 0.12 1.34 7.89 -2.39 -0.02 1.32 16 33 H 0.08 1.65 7.94 -2.39 -0.02 1.63 16 34 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.65 7.44 -2.39 -0.02 1.63 16 37 H 0.07 1.65 7.35 -2.39 -0.02 1.64 16 38 H 0.09 2.24 7.88 -2.39 -0.02 2.23 16 39 H 0.18 7.15 7.54 -2.91 -0.02 7.12 16 40 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.10 3.38 7.40 -2.40 -0.02 3.36 16 44 H 0.10 3.29 8.11 -2.39 -0.02 3.27 16 45 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -77.50 388.70 2.02 -75.48 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.99 Total: 25.81 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 8.06 Total: 0.37 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -7.88 Total: -113.03 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.07 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -1.14 Total: -7.62 kcal Total: -77.50 2.02 -75.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.133 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds