Wall clock time and date at job start Tue Mar 31 2020 22:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08993 * 112.96042 * 72.85831 * 4 3 2 6 6 C 1.53938 * 113.75639 * 204.50624 * 4 3 2 7 7 C 1.53932 * 86.34323 * 138.03736 * 6 4 3 8 8 N 1.47960 * 113.75771 * 301.06174 * 4 3 2 9 9 C 1.46901 * 110.99711 * 108.10558 * 8 4 3 10 10 C 1.50697 * 109.47321 * 170.00171 * 9 8 4 11 11 N 1.30837 * 125.96250 * 90.02014 * 10 9 8 12 12 C 1.33248 * 109.82759 * 180.02562 * 11 10 9 13 13 N 1.30712 * 108.94345 * 0.02562 * 12 11 10 14 14 N 1.34429 * 125.95841 * 269.71606 * 10 9 8 15 15 C 1.46494 * 126.82641 * 359.97438 * 14 10 9 16 16 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 17 17 O 1.21279 * 120.00410 * 179.97438 * 16 2 1 18 18 C 1.50703 * 119.99541 * 359.97438 * 16 2 1 19 19 S 1.81004 * 109.46790 * 180.02562 * 18 16 2 20 20 C 1.76197 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00243 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00041 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99629 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99851 * 24 22 20 26 26 H 1.48504 * 109.47049 * 209.99718 * 24 22 20 27 27 H 1.48500 * 109.47362 * 330.00074 * 24 22 20 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09000 * 113.73352 * 252.39461 * 6 4 3 34 34 H 1.09001 * 113.73365 * 23.56856 * 6 4 3 35 35 H 1.09002 * 113.75955 * 90.59045 * 7 6 4 36 36 H 1.08995 * 113.76221 * 221.85632 * 7 6 4 37 37 H 1.09004 * 109.46500 * 289.99863 * 9 8 4 38 38 H 1.08995 * 109.47239 * 49.99638 * 9 8 4 39 39 H 1.07993 * 125.52430 * 179.97438 * 12 11 10 40 40 H 1.08997 * 109.47163 * 89.99730 * 15 14 10 41 41 H 1.08998 * 109.47391 * 210.00289 * 15 14 10 42 42 H 1.09004 * 109.46840 * 330.00164 * 15 14 10 43 43 H 1.08996 * 109.47057 * 299.99739 * 18 16 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 18 16 2 45 45 H 0.97006 * 120.00094 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 3.2145 1.1120 1.9419 6 6 2.6542 3.2283 1.5999 7 6 1.7733 3.1154 2.8571 8 7 1.2180 1.8919 2.2374 9 6 1.0690 0.8198 3.2306 10 6 -0.0525 1.1637 4.1766 11 7 -1.3122 0.8450 4.0231 12 6 -2.0243 1.3103 5.0487 13 7 -1.2242 1.9347 5.8723 14 7 0.0676 1.8465 5.3284 15 6 1.3004 2.3935 5.9003 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0020 22 6 1.9282 -6.5081 -0.0020 23 7 1.0915 -7.5241 -0.0021 24 14 3.7708 -6.8154 -0.0015 25 1 4.2585 -6.8978 1.3987 26 1 4.0598 -8.0924 -0.7023 27 1 4.4588 -5.7004 -0.7004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 3.6846 3.5145 1.8105 34 1 2.2054 3.8159 0.7989 35 1 2.3356 2.9279 3.7719 36 1 1.0501 3.9242 2.9608 37 1 0.8412 -0.1171 2.7224 38 1 1.9974 0.7126 3.7915 39 1 -3.0899 1.1915 5.1779 40 1 1.4500 3.4100 5.5363 41 1 1.2228 2.4046 6.9875 42 1 2.1456 1.7729 5.6027 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 1.4316 -8.4326 -0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:51 Heat of formation + Delta-G solvation = 106.108111 kcal Electronic energy + Delta-G solvation = -27624.013548 eV Core-core repulsion = 23806.750577 eV Total energy + Delta-G solvation = -3817.262971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.39700 -40.60336 -39.08258 -35.24321 -34.42828 -33.03816 -32.41835 -30.66223 -29.88082 -28.18852 -27.58150 -26.27230 -25.58685 -25.15369 -23.61194 -22.23784 -20.67273 -20.07564 -19.19292 -17.62563 -17.46337 -16.92272 -16.60107 -16.27055 -15.99926 -15.51051 -15.23744 -15.00794 -14.94512 -14.64814 -13.90324 -13.79167 -13.67167 -13.50629 -13.23266 -13.08582 -13.03850 -12.77423 -12.53182 -12.25202 -12.08179 -11.97896 -11.75633 -11.68535 -11.34773 -11.24194 -11.10046 -11.00122 -10.55530 -10.19785 -9.98050 -9.84734 -9.82542 -9.46931 -9.30845 -8.98768 -8.48169 -8.45588 -6.90003 -6.26807 -3.98353 1.30578 1.98703 2.68819 2.76211 2.95516 3.19912 3.33234 3.49557 3.51022 3.63963 3.75215 4.11126 4.14339 4.31116 4.34305 4.47920 4.60857 4.65517 4.68054 4.75128 4.89829 4.96247 4.99776 5.05557 5.12156 5.16363 5.18163 5.25901 5.36344 5.40779 5.50054 5.58830 5.67953 5.75049 5.84901 5.88240 5.99565 6.03196 6.08999 6.20684 6.44019 6.55406 6.65340 7.51672 7.89007 7.96357 8.44784 8.47009 9.19362 10.82528 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.003090 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.786710 B = 9057.869677 C =10147.499262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.139 3.861 4 C 0.019 3.981 5 H 0.089 0.911 6 C -0.134 4.134 7 C -0.009 4.009 8 N -0.457 5.457 9 C 0.099 3.901 10 C 0.291 3.709 11 N -0.524 5.524 12 C 0.201 3.799 13 N -0.324 5.324 14 N -0.380 5.380 15 C 0.092 3.908 16 C 0.529 3.471 17 O -0.523 6.523 18 C -0.120 4.120 19 S -0.146 6.146 20 C -0.519 4.519 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.218 0.782 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 25.855 7.880 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.349 5.349 3 C 0.015 3.985 4 C -0.091 4.091 5 H 0.107 0.893 6 C -0.172 4.172 7 C -0.138 4.138 8 N -0.181 5.181 9 C -0.031 4.031 10 C 0.014 3.986 11 N -0.251 5.251 12 C -0.102 4.102 13 N -0.152 5.152 14 N -0.171 5.171 15 C -0.051 4.051 16 C 0.317 3.683 17 O -0.398 6.398 18 C -0.271 4.271 19 S 0.080 5.920 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.723 25.836 7.997 27.055 hybrid contribution -0.075 -0.598 0.687 0.913 sum 0.648 25.239 8.684 26.699 Atomic orbital electron populations 1.21873 0.78783 1.04224 1.01507 1.47745 1.07275 1.05072 1.74855 1.21289 0.98186 0.85270 0.93726 1.24024 0.91333 0.96716 0.97002 0.89314 1.23342 1.00361 0.95428 0.98116 1.24063 0.97687 0.95125 0.96944 1.68622 1.32689 1.01941 1.14814 1.21128 0.91783 0.98567 0.91637 1.24021 0.94676 0.92496 0.87382 1.70514 1.01358 1.26815 1.26444 1.26005 1.01159 0.94518 0.88528 1.78039 0.88069 1.25859 1.23220 1.50237 1.07491 1.42075 1.17318 1.22052 0.82101 0.99688 1.01224 1.20350 0.87887 0.84801 0.75262 1.90677 1.13708 1.86960 1.48486 1.23310 1.02982 0.95132 1.05657 1.84721 1.12134 0.97676 1.97427 1.22318 0.94906 0.90865 1.58612 0.89372 1.24710 0.98452 0.94887 0.93251 1.69941 1.34759 0.98859 1.48162 0.86742 0.85491 0.79806 0.79844 1.19305 1.19982 1.15915 0.93116 0.89675 0.90927 0.89227 0.90030 0.90413 0.88634 0.91299 0.89401 0.86586 0.91921 0.76579 0.90022 0.88765 0.89221 0.88611 0.88518 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.83 59.85 0.59 1.47 16 2 N -0.61 -7.88 2.82 -181.57 -0.51 -8.40 16 3 C 0.14 1.42 5.54 -4.04 -0.02 1.40 16 4 C 0.02 0.17 3.57 -66.66 -0.24 -0.07 16 5 H 0.09 0.89 7.80 -51.93 -0.40 0.49 16 6 C -0.13 -0.80 7.84 -25.80 -0.20 -1.01 16 7 C -0.01 -0.06 6.77 -2.77 -0.02 -0.08 16 8 N -0.46 -4.03 4.97 -232.15 -1.15 -5.18 16 9 C 0.10 1.01 5.15 -4.98 -0.03 0.98 16 10 C 0.29 3.32 7.03 -155.69 -1.09 2.23 16 11 N -0.52 -6.86 11.19 -11.97 -0.13 -7.00 16 12 C 0.20 2.29 13.03 -91.81 -1.20 1.10 16 13 N -0.32 -3.85 12.70 29.29 0.37 -3.47 16 14 N -0.38 -3.88 4.04 -65.10 -0.26 -4.14 16 15 C 0.09 0.53 9.61 59.84 0.58 1.11 16 16 C 0.53 9.19 7.69 -10.98 -0.08 9.10 16 17 O -0.52 -10.71 15.44 5.56 0.09 -10.62 16 18 C -0.12 -2.34 4.71 36.01 0.17 -2.17 16 19 S -0.15 -3.68 18.55 -107.50 -1.99 -5.68 16 20 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 21 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.70 13.97 55.49 0.78 -25.93 16 24 Si 0.86 21.78 27.74 -169.99 -4.71 17.06 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.89 7.25 -51.93 -0.38 0.51 16 30 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 31 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 32 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.53 7.94 -51.93 -0.41 0.12 16 35 H 0.07 0.35 5.35 -51.93 -0.28 0.08 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.12 1.42 7.93 -51.93 -0.41 1.01 16 38 H 0.06 0.54 6.67 -51.93 -0.35 0.20 16 39 H 0.22 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.08 0.34 7.22 -51.93 -0.37 -0.03 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.38 6.81 -51.93 -0.35 0.03 16 43 H 0.10 1.77 7.40 -51.92 -0.38 1.39 16 44 H 0.10 1.80 8.11 -51.92 -0.42 1.38 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -36.39 379.81 -9.73 -46.12 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.58 Total: -0.55 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.33 Total: 2.06 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.92 Total: -54.12 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.39 -9.73 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.225 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds