Wall clock time and date at job start Tue Mar 31 2020 22:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08993 * 112.96042 * 72.85831 * 4 3 2 6 6 C 1.53938 * 113.75639 * 204.50624 * 4 3 2 7 7 C 1.53932 * 86.34323 * 138.03736 * 6 4 3 8 8 N 1.47960 * 113.75771 * 301.06174 * 4 3 2 9 9 C 1.46901 * 110.99711 * 108.10558 * 8 4 3 10 10 C 1.50697 * 109.47321 * 170.00171 * 9 8 4 11 11 N 1.30837 * 125.96250 * 90.02014 * 10 9 8 12 12 C 1.33248 * 109.82759 * 180.02562 * 11 10 9 13 13 N 1.30712 * 108.94345 * 0.02562 * 12 11 10 14 14 N 1.34429 * 125.95841 * 269.71606 * 10 9 8 15 15 C 1.46494 * 126.82641 * 359.97438 * 14 10 9 16 16 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 17 17 O 1.21279 * 120.00410 * 179.97438 * 16 2 1 18 18 C 1.50703 * 119.99541 * 359.97438 * 16 2 1 19 19 S 1.81004 * 109.46790 * 180.02562 * 18 16 2 20 20 C 1.76197 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00243 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00041 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99629 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99851 * 24 22 20 26 26 H 1.48504 * 109.47049 * 209.99718 * 24 22 20 27 27 H 1.48500 * 109.47362 * 330.00074 * 24 22 20 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09000 * 113.73352 * 252.39461 * 6 4 3 34 34 H 1.09001 * 113.73365 * 23.56856 * 6 4 3 35 35 H 1.09002 * 113.75955 * 90.59045 * 7 6 4 36 36 H 1.08995 * 113.76221 * 221.85632 * 7 6 4 37 37 H 1.09004 * 109.46500 * 289.99863 * 9 8 4 38 38 H 1.08995 * 109.47239 * 49.99638 * 9 8 4 39 39 H 1.07993 * 125.52430 * 179.97438 * 12 11 10 40 40 H 1.08997 * 109.47163 * 89.99730 * 15 14 10 41 41 H 1.08998 * 109.47391 * 210.00289 * 15 14 10 42 42 H 1.09004 * 109.46840 * 330.00164 * 15 14 10 43 43 H 1.08996 * 109.47057 * 299.99739 * 18 16 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 18 16 2 45 45 H 0.97006 * 120.00094 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 3.2145 1.1120 1.9419 6 6 2.6542 3.2283 1.5999 7 6 1.7733 3.1154 2.8571 8 7 1.2180 1.8919 2.2374 9 6 1.0690 0.8198 3.2306 10 6 -0.0525 1.1637 4.1766 11 7 -1.3122 0.8450 4.0231 12 6 -2.0243 1.3103 5.0487 13 7 -1.2242 1.9347 5.8723 14 7 0.0676 1.8465 5.3284 15 6 1.3004 2.3935 5.9003 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0020 22 6 1.9282 -6.5081 -0.0020 23 7 1.0915 -7.5241 -0.0021 24 14 3.7708 -6.8154 -0.0015 25 1 4.2585 -6.8978 1.3987 26 1 4.0598 -8.0924 -0.7023 27 1 4.4588 -5.7004 -0.7004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 3.6846 3.5145 1.8105 34 1 2.2054 3.8159 0.7989 35 1 2.3356 2.9279 3.7719 36 1 1.0501 3.9242 2.9608 37 1 0.8412 -0.1171 2.7224 38 1 1.9974 0.7126 3.7915 39 1 -3.0899 1.1915 5.1779 40 1 1.4500 3.4100 5.5363 41 1 1.2228 2.4046 6.9875 42 1 2.1456 1.7729 5.6027 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 1.4316 -8.4326 -0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:50 Heat of formation + Delta-G solvation = 80.946825 kcal Electronic energy + Delta-G solvation = -27625.104623 eV Core-core repulsion = 23806.750577 eV Total energy + Delta-G solvation = -3818.354046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.19712 -41.42072 -40.24427 -36.42896 -35.14517 -34.66927 -33.81601 -31.83008 -30.70326 -29.26543 -28.20654 -27.85440 -27.24762 -25.83815 -24.44041 -23.03153 -21.44486 -20.86382 -20.44055 -19.49731 -18.17104 -18.05955 -17.51781 -17.23987 -17.15920 -16.99577 -16.34262 -16.15464 -15.92717 -15.68234 -15.36649 -14.92126 -14.63086 -14.43527 -14.30523 -14.18039 -14.08888 -13.72905 -13.51068 -13.35921 -13.30516 -13.12728 -13.01203 -12.71552 -12.56949 -12.50624 -12.38907 -11.96503 -11.88080 -11.75716 -11.16767 -11.06586 -10.88619 -10.77201 -10.59471 -10.52760 -10.05743 -9.48774 -8.98918 -8.50970 -6.21831 0.49920 0.99470 1.31301 1.31691 1.46717 1.55843 1.56916 1.86834 2.13939 2.25478 2.69063 2.81084 2.87167 3.02613 3.49258 3.54340 3.61558 3.71546 3.84793 4.02221 4.15702 4.19410 4.20537 4.25210 4.31516 4.35278 4.40377 4.48726 4.50495 4.54817 4.63417 4.70263 4.75128 4.90652 5.00947 5.06152 5.21300 5.22159 5.26773 5.42101 5.58481 5.71114 5.73556 5.90004 6.11912 6.31585 6.93852 7.06808 7.14202 8.61758 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.003090 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.786710 B = 9057.869677 C =10147.499262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.598 5.598 3 C 0.135 3.865 4 C 0.017 3.983 5 H 0.075 0.925 6 C -0.117 4.117 7 C -0.007 4.007 8 N -0.465 5.465 9 C 0.105 3.895 10 C 0.285 3.715 11 N -0.559 5.559 12 C 0.192 3.808 13 N -0.344 5.344 14 N -0.376 5.376 15 C 0.080 3.920 16 C 0.533 3.467 17 O -0.558 6.558 18 C -0.108 4.108 19 S -0.170 6.170 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.045 3.955 23 N -0.918 5.918 24 Si 0.916 3.084 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.242 0.758 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 28.402 8.174 29.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.331 5.331 3 C 0.013 3.987 4 C -0.093 4.093 5 H 0.093 0.907 6 C -0.155 4.155 7 C -0.135 4.135 8 N -0.189 5.189 9 C -0.025 4.025 10 C 0.008 3.992 11 N -0.288 5.288 12 C -0.110 4.110 13 N -0.172 5.172 14 N -0.168 5.168 15 C -0.061 4.061 16 C 0.320 3.680 17 O -0.437 6.437 18 C -0.258 4.258 19 S 0.057 5.943 20 C -0.678 4.678 21 H 0.076 0.924 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.738 3.262 25 H -0.186 1.186 26 H -0.183 1.183 27 H -0.158 1.158 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.258 0.742 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.831 28.434 8.302 29.678 hybrid contribution -0.555 -1.240 0.626 1.496 sum 1.276 27.194 8.929 28.651 Atomic orbital electron populations 1.21965 0.77445 1.04281 1.02479 1.47702 1.08037 1.04710 1.72604 1.21555 0.97831 0.84095 0.95252 1.23939 0.91050 0.98682 0.95639 0.90702 1.23297 1.01367 0.92885 0.97960 1.24137 0.97750 0.93725 0.97864 1.68618 1.32951 1.02343 1.15030 1.21038 0.91869 0.97960 0.91664 1.24154 0.94550 0.92557 0.87921 1.70477 1.02492 1.28068 1.27742 1.26540 1.02317 0.94126 0.88039 1.77974 0.88933 1.26488 1.23854 1.50466 1.08015 1.41443 1.16837 1.22442 0.80857 1.00986 1.01771 1.19898 0.87227 0.85168 0.75698 1.90663 1.14871 1.87378 1.50804 1.23286 1.01808 0.94273 1.06479 1.84553 1.13551 0.98656 1.97539 1.22470 0.94332 0.92691 1.58269 0.92366 1.25592 1.02920 0.94679 0.92835 1.70026 1.36888 0.99545 1.49186 0.85847 0.80006 0.80153 0.80237 1.18647 1.18347 1.15831 0.91551 0.88534 0.91995 0.90259 0.87473 0.88737 0.87661 0.89693 0.89372 0.89178 0.90607 0.74229 0.87984 0.88040 0.87546 0.87896 0.87672 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.67 9.83 127.77 1.26 2.92 16 2 N -0.60 -14.54 2.82 -846.74 -2.39 -16.93 16 3 C 0.14 2.49 5.54 86.38 0.48 2.97 16 4 C 0.02 0.26 3.57 45.02 0.16 0.42 16 5 H 0.07 1.39 7.80 -2.39 -0.02 1.37 16 6 C -0.12 -0.99 7.84 31.24 0.25 -0.75 16 7 C -0.01 -0.06 6.77 86.40 0.58 0.52 16 8 N -0.47 -7.23 4.97 -888.39 -4.42 -11.65 16 9 C 0.11 2.02 5.15 85.56 0.44 2.46 16 10 C 0.29 6.24 7.03 138.22 0.97 7.21 16 11 N -0.56 -14.47 11.19 -191.78 -2.15 -16.62 16 12 C 0.19 4.29 13.03 180.76 2.36 6.65 16 13 N -0.34 -7.86 12.70 -61.25 -0.78 -8.64 16 14 N -0.38 -7.14 4.04 -359.88 -1.45 -8.60 16 15 C 0.08 0.74 9.61 127.77 1.23 1.96 16 16 C 0.53 18.23 7.69 87.66 0.67 18.90 16 17 O -0.56 -22.71 15.44 -3.02 -0.05 -22.76 16 18 C -0.11 -4.20 4.71 71.24 0.34 -3.87 16 19 S -0.17 -8.62 18.55 -56.49 -1.05 -9.66 16 20 C -0.53 -31.33 10.04 67.95 0.68 -30.65 16 21 H 0.06 3.67 8.03 -2.91 -0.02 3.64 16 22 C 0.04 2.67 5.50 84.86 0.47 3.13 16 23 N -0.92 -56.61 13.97 21.65 0.30 -56.31 16 24 Si 0.92 45.11 27.74 68.60 1.90 47.02 16 25 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.23 -11.45 6.74 99.48 0.67 -10.78 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.84 7.25 -2.39 -0.02 1.82 16 30 H 0.06 1.44 6.44 -2.38 -0.02 1.42 16 31 H 0.08 1.68 7.42 -2.39 -0.02 1.67 16 32 H 0.11 1.45 7.84 -2.38 -0.02 1.44 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.10 0.75 7.94 -2.39 -0.02 0.73 16 35 H 0.09 0.57 5.35 -2.39 -0.01 0.56 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 2.20 7.93 -2.38 -0.02 2.19 16 38 H 0.08 1.20 6.67 -2.39 -0.02 1.18 16 39 H 0.24 3.58 8.06 -2.91 -0.02 3.55 16 40 H 0.10 0.54 7.22 -2.39 -0.02 0.52 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.62 6.81 -2.38 -0.02 0.60 16 43 H 0.10 3.86 7.40 -2.40 -0.02 3.85 16 44 H 0.11 3.91 8.11 -2.40 -0.02 3.89 16 45 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -80.09 379.81 0.77 -79.32 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.96 Total: 12.95 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 9.88 Total: 11.88 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -10.88 Total: -118.74 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.02 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.05 Total: -9.66 kcal Total: -80.09 0.77 -79.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.269 kcal (2) G-P(sol) polarization free energy of solvation -80.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds