Wall clock time and date at job start Tue Mar 31 2020 22:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.53000 * 109.46986 * 269.99545 * 3 2 1 5 5 H 1.08998 * 112.96045 * 72.86102 * 4 3 2 6 6 C 1.53933 * 113.76081 * 204.50909 * 4 3 2 7 7 C 1.53931 * 86.34402 * 138.03607 * 6 4 3 8 8 N 1.47958 * 86.18186 * 336.28086 * 7 6 4 9 9 C 1.46901 * 111.00302 * 137.58290 * 8 7 6 10 10 C 1.52997 * 109.47144 * 70.63828 * 9 8 7 11 11 N 1.46500 * 109.46606 * 179.97438 * 10 9 8 12 12 C 1.34430 * 126.81845 * 124.71624 * 11 10 9 13 13 N 1.30834 * 108.07782 * 179.88984 * 12 11 10 14 14 C 1.33247 * 109.82614 * 0.37915 * 13 12 11 15 15 N 1.30712 * 108.94542 * 359.76198 * 14 13 12 16 16 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 17 17 O 1.21279 * 120.00166 * 180.02562 * 16 2 1 18 18 C 1.50706 * 119.99762 * 0.02562 * 16 2 1 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 2 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47083 * 60.00261 * 24 22 20 26 26 H 1.48506 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47209 * 299.99712 * 24 22 20 28 28 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 29 29 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 30 30 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 31 31 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 32 32 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 33 33 H 1.09002 * 113.73743 * 252.39863 * 6 4 3 34 34 H 1.08998 * 113.73379 * 23.67862 * 6 4 3 35 35 H 1.09000 * 113.75744 * 90.59639 * 7 6 4 36 36 H 1.09003 * 113.76591 * 221.95961 * 7 6 4 37 37 H 1.09005 * 109.46747 * 190.64037 * 9 8 7 38 38 H 1.09001 * 109.46589 * 310.63552 * 9 8 7 39 39 H 1.09001 * 109.47208 * 300.00177 * 10 9 8 40 40 H 1.08998 * 109.46879 * 60.00454 * 10 9 8 41 41 H 1.08003 * 125.96677 * 0.02841 * 12 11 10 42 42 H 1.07996 * 125.52750 * 179.80060 * 14 13 12 43 43 H 1.09000 * 109.47318 * 299.99141 * 18 16 2 44 44 H 1.09000 * 109.47161 * 59.99772 * 18 16 2 45 45 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5535 2.0710 -1.9420 6 6 3.6664 2.6438 -1.5999 7 6 4.0091 1.8243 -2.8571 8 7 3.2271 0.7317 -2.2374 9 6 2.3732 0.0666 -3.2306 10 6 3.2450 -0.7450 -4.1909 11 7 2.3933 -1.4088 -5.1810 12 6 2.4907 -1.3168 -6.5186 13 7 1.5509 -2.0586 -7.0461 14 6 0.8316 -2.6305 -6.0812 15 7 1.3091 -2.2629 -4.9213 16 6 2.1389 -1.1672 0.0005 17 8 3.3517 -1.1673 0.0010 18 6 1.3853 -2.4723 0.0005 19 16 2.5615 -3.8481 0.0005 20 6 1.4413 -5.2082 0.0013 21 1 0.3761 -5.0304 0.0020 22 6 1.9281 -6.5081 0.0020 23 7 3.2264 -6.7248 0.0027 24 14 0.7405 -7.9500 0.0036 25 1 -0.1150 -7.8880 -1.2086 26 1 1.5067 -9.2222 0.0048 27 1 -0.1140 -7.8863 1.2164 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.3991 3.6793 -1.8106 34 1 4.4005 2.5476 -0.8000 35 1 3.5657 2.2175 -3.7719 36 1 5.0710 1.6008 -2.9598 37 1 1.6756 -0.5991 -2.7223 38 1 1.8161 0.8170 -3.7915 39 1 3.9426 -0.0793 -4.6991 40 1 3.8020 -1.4954 -3.6299 41 1 3.2193 -0.7342 -7.0629 42 1 -0.0092 -3.2911 -6.2329 43 1 0.7584 -2.5299 0.8903 44 1 0.7589 -2.5302 -0.8897 45 1 3.5666 -7.6331 0.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230818637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:39 Heat of formation + Delta-G solvation = 107.151969 kcal Electronic energy + Delta-G solvation = -27891.235272 eV Core-core repulsion = 24074.017566 eV Total energy + Delta-G solvation = -3817.217705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99931 -40.49206 -38.78634 -35.22741 -34.72640 -32.35594 -31.31460 -31.11466 -30.11603 -28.00027 -26.97765 -26.23997 -25.40153 -23.50491 -23.13397 -21.92803 -21.14464 -19.85198 -19.09492 -17.58382 -17.42337 -16.55977 -16.29528 -16.02806 -15.82543 -15.40258 -14.93735 -14.74110 -14.67759 -14.33135 -14.26784 -13.83415 -13.79474 -13.14881 -12.98061 -12.80612 -12.57027 -12.40063 -12.33863 -12.12945 -11.96186 -11.70815 -11.53772 -11.27139 -11.06658 -10.98671 -10.96712 -10.78040 -10.70618 -9.97387 -9.75042 -9.73711 -9.64960 -9.13984 -8.98972 -8.97413 -8.31079 -8.13509 -6.39871 -6.14626 -3.83166 1.68860 2.28357 3.01068 3.02344 3.27123 3.28209 3.30477 3.33291 3.62302 3.81468 4.25410 4.27835 4.29468 4.34453 4.54944 4.72528 4.88321 4.91008 4.96934 5.01613 5.09249 5.16869 5.19835 5.20563 5.25097 5.34823 5.42486 5.48872 5.56485 5.65424 5.66296 5.72784 5.75327 5.89807 5.99048 6.02909 6.20761 6.25527 6.26665 6.48139 6.77479 6.79532 6.90318 7.65877 7.69488 8.11319 8.42105 8.78246 9.30932 10.92800 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008475 B = 0.004409 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.234701 B = 6349.637298 C = 8613.370899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.625 5.625 3 C 0.138 3.862 4 C 0.017 3.983 5 H 0.075 0.925 6 C -0.134 4.134 7 C -0.008 4.008 8 N -0.444 5.444 9 C 0.021 3.979 10 C 0.134 3.866 11 N -0.373 5.373 12 C 0.245 3.755 13 N -0.551 5.551 14 C 0.191 3.809 15 N -0.298 5.298 16 C 0.534 3.466 17 O -0.493 6.493 18 C -0.149 4.149 19 S -0.057 6.057 20 C -0.532 4.532 21 H 0.070 0.930 22 C 0.075 3.925 23 N -0.869 5.869 24 Si 0.915 3.085 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.215 0.785 42 H 0.215 0.785 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 21.489 -7.742 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.362 5.362 3 C 0.014 3.986 4 C -0.094 4.094 5 H 0.093 0.907 6 C -0.172 4.172 7 C -0.137 4.137 8 N -0.167 5.167 9 C -0.109 4.109 10 C 0.011 3.989 11 N -0.164 5.164 12 C -0.052 4.052 13 N -0.278 5.278 14 C -0.112 4.112 15 N -0.125 5.125 16 C 0.322 3.678 17 O -0.365 6.365 18 C -0.300 4.300 19 S 0.169 5.831 20 C -0.680 4.680 21 H 0.088 0.912 22 C -0.134 4.134 23 N -0.505 5.505 24 Si 0.741 3.259 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.231 0.769 42 H 0.232 0.768 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.129 20.525 -7.007 21.717 hybrid contribution -2.690 -0.273 -0.648 2.780 sum -3.819 20.252 -7.655 21.984 Atomic orbital electron populations 1.21720 0.80289 1.02695 1.01514 1.47771 1.06236 1.05683 1.76538 1.21270 0.98292 0.85053 0.93964 1.23920 0.96063 0.92398 0.96975 0.90736 1.23321 0.97571 0.97610 0.98711 1.23942 1.01019 0.92440 0.96317 1.68680 1.15689 1.17697 1.14659 1.22769 0.96007 0.98148 0.93961 1.21715 0.90958 0.96921 0.89261 1.50540 1.24392 1.34953 1.06526 1.25985 0.98473 0.98288 0.82468 1.70508 1.08701 1.14683 1.33945 1.26034 1.00243 0.99715 0.85224 1.78248 1.00962 1.09800 1.23530 1.20158 0.88020 0.84165 0.75494 1.90696 1.13299 1.86382 1.46116 1.23549 1.04514 0.97694 1.04202 1.85297 1.07982 0.93152 1.96626 1.22818 0.94283 0.92353 1.58570 0.91207 1.24949 0.95570 0.98257 0.94652 1.70005 1.11712 1.21584 1.47179 0.86282 0.80322 0.80472 0.78783 1.19949 1.20858 1.19984 0.92882 0.91985 0.90909 0.90674 0.89120 0.91065 0.88563 0.91730 0.88975 0.89023 0.94564 0.88590 0.87484 0.76892 0.76821 0.89885 0.89699 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.24 59.85 0.61 1.49 16 2 N -0.63 -8.65 2.85 -181.57 -0.52 -9.16 16 3 C 0.14 1.55 5.56 -4.04 -0.02 1.53 16 4 C 0.02 0.17 3.57 -66.65 -0.24 -0.07 16 5 H 0.07 0.67 7.80 -51.93 -0.40 0.27 16 6 C -0.13 -1.05 7.84 -25.80 -0.20 -1.25 16 7 C -0.01 -0.07 7.10 -2.77 -0.02 -0.09 16 8 N -0.44 -5.32 5.03 -230.70 -1.16 -6.48 16 9 C 0.02 0.25 5.03 -3.82 -0.02 0.24 16 10 C 0.13 1.61 6.61 -4.04 -0.03 1.59 16 11 N -0.37 -5.03 3.69 -62.63 -0.23 -5.26 16 12 C 0.24 2.81 12.63 -90.65 -1.14 1.66 16 13 N -0.55 -7.64 11.19 -15.83 -0.18 -7.82 16 14 C 0.19 2.74 13.03 -91.81 -1.20 1.54 16 15 N -0.30 -4.89 12.57 29.29 0.37 -4.53 16 16 C 0.53 10.10 6.92 -10.98 -0.08 10.02 16 17 O -0.49 -10.95 14.87 5.56 0.08 -10.87 16 18 C -0.15 -3.14 4.71 36.01 0.17 -2.97 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.53 -15.54 9.50 30.94 0.29 -15.24 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.18 5.49 -17.43 -0.10 2.08 16 23 N -0.87 -26.75 13.22 55.49 0.73 -26.01 16 24 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 31 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.09 1.20 7.19 -51.93 -0.37 0.83 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 35 H 0.06 0.45 7.78 -51.93 -0.40 0.05 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.45 7.79 -51.93 -0.40 1.05 16 38 H 0.04 0.40 7.69 -51.93 -0.40 0.01 16 39 H 0.10 0.80 7.49 -51.93 -0.39 0.41 16 40 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.21 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.22 2.39 8.06 -52.49 -0.42 1.97 16 43 H 0.08 1.66 8.11 -51.92 -0.42 1.24 16 44 H 0.08 1.74 7.40 -51.92 -0.38 1.36 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -37.96 389.68 -11.07 -49.03 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.85 Total: 1.53 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.97 Total: 0.53 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.98 Total: -59.26 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.96 -11.07 -49.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230818637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.184 kcal (2) G-P(sol) polarization free energy of solvation -37.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds