Wall clock time and date at job start Tue Mar 31 2020 22:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.53000 * 109.46986 * 269.99545 * 3 2 1 5 5 H 1.08998 * 112.96045 * 72.86102 * 4 3 2 6 6 C 1.53933 * 113.76081 * 204.50909 * 4 3 2 7 7 C 1.53931 * 86.34402 * 138.03607 * 6 4 3 8 8 N 1.47958 * 86.18186 * 336.28086 * 7 6 4 9 9 C 1.46901 * 111.00302 * 137.58290 * 8 7 6 10 10 C 1.52997 * 109.47144 * 70.63828 * 9 8 7 11 11 N 1.46500 * 109.46606 * 179.97438 * 10 9 8 12 12 C 1.34430 * 126.81845 * 124.71624 * 11 10 9 13 13 N 1.30834 * 108.07782 * 179.88984 * 12 11 10 14 14 C 1.33247 * 109.82614 * 0.37915 * 13 12 11 15 15 N 1.30712 * 108.94542 * 359.76198 * 14 13 12 16 16 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 17 17 O 1.21279 * 120.00166 * 180.02562 * 16 2 1 18 18 C 1.50706 * 119.99762 * 0.02562 * 16 2 1 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 2 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47083 * 60.00261 * 24 22 20 26 26 H 1.48506 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47209 * 299.99712 * 24 22 20 28 28 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 29 29 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 30 30 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 31 31 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 32 32 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 33 33 H 1.09002 * 113.73743 * 252.39863 * 6 4 3 34 34 H 1.08998 * 113.73379 * 23.67862 * 6 4 3 35 35 H 1.09000 * 113.75744 * 90.59639 * 7 6 4 36 36 H 1.09003 * 113.76591 * 221.95961 * 7 6 4 37 37 H 1.09005 * 109.46747 * 190.64037 * 9 8 7 38 38 H 1.09001 * 109.46589 * 310.63552 * 9 8 7 39 39 H 1.09001 * 109.47208 * 300.00177 * 10 9 8 40 40 H 1.08998 * 109.46879 * 60.00454 * 10 9 8 41 41 H 1.08003 * 125.96677 * 0.02841 * 12 11 10 42 42 H 1.07996 * 125.52750 * 179.80060 * 14 13 12 43 43 H 1.09000 * 109.47318 * 299.99141 * 18 16 2 44 44 H 1.09000 * 109.47161 * 59.99772 * 18 16 2 45 45 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5535 2.0710 -1.9420 6 6 3.6664 2.6438 -1.5999 7 6 4.0091 1.8243 -2.8571 8 7 3.2271 0.7317 -2.2374 9 6 2.3732 0.0666 -3.2306 10 6 3.2450 -0.7450 -4.1909 11 7 2.3933 -1.4088 -5.1810 12 6 2.4907 -1.3168 -6.5186 13 7 1.5509 -2.0586 -7.0461 14 6 0.8316 -2.6305 -6.0812 15 7 1.3091 -2.2629 -4.9213 16 6 2.1389 -1.1672 0.0005 17 8 3.3517 -1.1673 0.0010 18 6 1.3853 -2.4723 0.0005 19 16 2.5615 -3.8481 0.0005 20 6 1.4413 -5.2082 0.0013 21 1 0.3761 -5.0304 0.0020 22 6 1.9281 -6.5081 0.0020 23 7 3.2264 -6.7248 0.0027 24 14 0.7405 -7.9500 0.0036 25 1 -0.1150 -7.8880 -1.2086 26 1 1.5067 -9.2222 0.0048 27 1 -0.1140 -7.8863 1.2164 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.3991 3.6793 -1.8106 34 1 4.4005 2.5476 -0.8000 35 1 3.5657 2.2175 -3.7719 36 1 5.0710 1.6008 -2.9598 37 1 1.6756 -0.5991 -2.7223 38 1 1.8161 0.8170 -3.7915 39 1 3.9426 -0.0793 -4.6991 40 1 3.8020 -1.4954 -3.6299 41 1 3.2193 -0.7342 -7.0629 42 1 -0.0092 -3.2911 -6.2329 43 1 0.7584 -2.5299 0.8903 44 1 0.7589 -2.5302 -0.8897 45 1 3.5666 -7.6331 0.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230818637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:39 Heat of formation + Delta-G solvation = 81.326194 kcal Electronic energy + Delta-G solvation = -27892.355162 eV Core-core repulsion = 24074.017566 eV Total energy + Delta-G solvation = -3818.337595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.01137 -41.40134 -40.05580 -36.44081 -35.74539 -34.59510 -32.33126 -32.16469 -31.35363 -29.20363 -27.84638 -27.68859 -27.21368 -24.41427 -24.08282 -22.89356 -22.14570 -20.76303 -20.38849 -19.49059 -18.38323 -17.91767 -17.30585 -17.06659 -16.99698 -16.89145 -16.40435 -16.05502 -15.80682 -15.71471 -15.24729 -15.15437 -14.75861 -14.52616 -14.27288 -14.13856 -13.80762 -13.42870 -13.33562 -13.22981 -13.16466 -13.11262 -12.89989 -12.70094 -12.54851 -12.40421 -12.13434 -11.83228 -11.72892 -11.59652 -11.14379 -11.01961 -10.83247 -10.69649 -10.64998 -10.26547 -9.84278 -9.36419 -8.64290 -8.35595 -6.11694 0.70585 1.25649 1.34334 1.40176 1.43922 1.55146 1.78745 1.98632 2.19210 2.28117 2.95283 2.98106 3.29986 3.39652 3.47921 3.60801 3.77373 3.81536 3.90135 4.00174 4.09100 4.18224 4.23422 4.25740 4.31602 4.35689 4.45182 4.46748 4.51992 4.65769 4.68685 4.76933 4.85738 4.88847 4.98129 5.00608 5.23370 5.31089 5.38844 5.41292 5.45735 5.73759 5.90984 6.11917 6.17715 6.41406 7.05510 7.09670 7.35922 8.73413 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008475 B = 0.004409 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.234701 B = 6349.637298 C = 8613.370899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.612 5.612 3 C 0.133 3.867 4 C 0.017 3.983 5 H 0.092 0.908 6 C -0.120 4.120 7 C -0.004 4.004 8 N -0.483 5.483 9 C 0.036 3.964 10 C 0.138 3.862 11 N -0.381 5.381 12 C 0.260 3.740 13 N -0.574 5.574 14 C 0.188 3.812 15 N -0.354 5.354 16 C 0.537 3.463 17 O -0.536 6.536 18 C -0.122 4.122 19 S -0.139 6.139 20 C -0.547 4.547 21 H 0.075 0.925 22 C 0.017 3.983 23 N -0.911 5.911 24 Si 0.993 3.007 25 H -0.265 1.265 26 H -0.276 1.276 27 H -0.260 1.260 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.140 0.860 40 H 0.063 0.937 41 H 0.265 0.735 42 H 0.234 0.766 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 23.970 -8.758 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.346 5.346 3 C 0.011 3.989 4 C -0.093 4.093 5 H 0.110 0.890 6 C -0.158 4.158 7 C -0.132 4.132 8 N -0.207 5.207 9 C -0.094 4.094 10 C 0.016 3.984 11 N -0.172 5.172 12 C -0.036 4.036 13 N -0.302 5.302 14 C -0.115 4.115 15 N -0.182 5.182 16 C 0.323 3.677 17 O -0.411 6.411 18 C -0.273 4.273 19 S 0.089 5.911 20 C -0.695 4.695 21 H 0.093 0.907 22 C -0.188 4.188 23 N -0.547 5.547 24 Si 0.815 3.185 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.185 1.185 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.158 0.842 40 H 0.082 0.918 41 H 0.281 0.719 42 H 0.250 0.750 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.745 23.062 -8.014 24.569 hybrid contribution -2.198 -0.899 -0.349 2.400 sum -4.943 22.164 -8.364 24.199 Atomic orbital electron populations 1.21966 0.78011 1.03816 1.02922 1.47697 1.07654 1.05002 1.74291 1.21557 0.97569 0.84229 0.95589 1.23980 0.97420 0.92343 0.95571 0.88980 1.23230 0.96005 0.98679 0.97903 1.24024 1.00616 0.91105 0.97498 1.68706 1.16703 1.19662 1.15625 1.22522 0.95435 0.97659 0.93737 1.21741 0.91092 0.96142 0.89421 1.50590 1.24060 1.34996 1.07538 1.26981 0.97971 0.96916 0.81731 1.70543 1.09728 1.15744 1.34176 1.26486 1.00553 0.99488 0.84953 1.78178 1.02993 1.11860 1.25169 1.19738 0.87346 0.84835 0.75785 1.90676 1.14837 1.86976 1.48645 1.23343 1.02739 0.96510 1.04726 1.85397 1.12148 0.96696 1.96887 1.23134 0.94465 0.93063 1.58795 0.90700 1.26060 0.97537 1.01471 0.93738 1.70168 1.14027 1.22415 1.48131 0.85088 0.77799 0.76178 0.79471 1.18964 1.20063 1.18470 0.91210 0.88450 0.92310 0.86775 0.91635 0.88093 0.89664 0.89348 0.89220 0.93281 0.92941 0.84247 0.91841 0.71910 0.75028 0.88725 0.89504 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 10.24 127.77 1.31 2.77 16 2 N -0.61 -16.42 2.85 -846.75 -2.41 -18.83 16 3 C 0.13 2.76 5.56 86.38 0.48 3.24 16 4 C 0.02 0.30 3.57 45.02 0.16 0.46 16 5 H 0.09 1.30 7.80 -2.39 -0.02 1.29 16 6 C -0.12 -1.54 7.84 31.24 0.24 -1.30 16 7 C 0.00 -0.06 7.10 86.40 0.61 0.55 16 8 N -0.48 -11.17 5.03 -883.81 -4.44 -15.61 16 9 C 0.04 0.88 5.03 86.30 0.43 1.31 16 10 C 0.14 3.33 6.61 86.38 0.57 3.90 16 11 N -0.38 -10.21 3.69 -352.06 -1.30 -11.51 16 12 C 0.26 5.49 12.63 180.36 2.28 7.77 16 13 N -0.57 -15.38 11.19 -204.00 -2.28 -17.66 16 14 C 0.19 5.45 13.03 180.76 2.36 7.81 16 15 N -0.35 -12.01 12.57 -61.24 -0.77 -12.78 16 16 C 0.54 20.91 6.92 87.66 0.61 21.51 16 17 O -0.54 -25.03 14.87 -3.03 -0.04 -25.08 16 18 C -0.12 -5.33 4.71 71.24 0.34 -5.00 16 19 S -0.14 -8.08 20.57 -56.49 -1.16 -9.24 16 20 C -0.55 -32.91 9.50 67.96 0.65 -32.26 16 21 H 0.07 4.26 7.80 -2.91 -0.02 4.24 16 22 C 0.02 0.99 5.49 84.86 0.47 1.46 16 23 N -0.91 -57.86 13.22 21.65 0.29 -57.58 16 24 Si 0.99 45.55 29.55 68.60 2.03 47.58 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.25 8.07 -2.38 -0.02 1.23 16 30 H 0.06 1.33 6.44 -2.39 -0.02 1.31 16 31 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 32 H 0.07 1.73 7.19 -2.39 -0.02 1.71 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.31 7.94 -2.39 -0.02 1.29 16 35 H 0.09 0.88 7.78 -2.39 -0.02 0.86 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.61 7.79 -2.38 -0.02 1.59 16 38 H 0.05 1.07 7.69 -2.39 -0.02 1.05 16 39 H 0.14 2.02 7.49 -2.39 -0.02 2.00 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.27 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.23 5.28 8.06 -2.91 -0.02 5.26 16 43 H 0.09 3.86 8.11 -2.39 -0.02 3.84 16 44 H 0.09 3.73 7.40 -2.40 -0.02 3.71 16 45 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -89.27 389.68 1.39 -87.89 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.98 Total: 20.61 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 10.50 Total: 12.22 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -10.92 Total: -133.97 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.04 Total: -25.08 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -89.27 1.39 -87.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230818637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.212 kcal (2) G-P(sol) polarization free energy of solvation -89.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds