Wall clock time and date at job start Tue Mar 31 2020 22:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47233 * 2 1 4 4 C 1.35705 * 117.00097 * 179.97438 * 3 2 1 5 5 C 1.38908 * 119.66743 * 179.97438 * 4 3 2 6 6 C 1.38379 * 119.12335 * 179.97438 * 5 4 3 7 7 C 1.50698 * 120.76747 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47419 * 104.99978 * 7 6 5 9 9 C 1.46958 * 110.99844 * 293.80540 * 8 7 6 10 10 C 1.53053 * 109.36219 * 176.80883 * 9 8 7 11 11 N 1.46954 * 109.36504 * 58.39998 * 10 9 8 12 12 C 1.46900 * 110.99941 * 176.81208 * 11 10 9 13 13 C 1.50689 * 109.47216 * 293.79826 * 12 11 10 14 14 H 1.08008 * 120.00071 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00317 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99491 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00208 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47224 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47295 * 120.00095 * 17 15 13 20 20 H 1.48500 * 109.47365 * 239.99791 * 17 15 13 21 21 C 1.46965 * 110.88136 * 300.68111 * 11 10 9 22 22 C 1.46954 * 110.99846 * 170.00212 * 8 7 6 23 23 C 1.38925 * 118.47240 * 0.02562 * 6 5 4 24 24 Cl 1.73606 * 120.36753 * 179.97438 * 23 6 5 25 25 C 1.38153 * 119.26725 * 359.97438 * 23 6 5 26 26 N 1.31974 * 120.81227 * 359.72868 * 25 23 6 27 27 H 1.08996 * 109.47090 * 300.00211 * 1 2 3 28 28 H 1.08999 * 109.47084 * 60.00039 * 1 2 3 29 29 H 1.09003 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47592 * 239.99860 * 2 1 3 31 31 H 1.09004 * 109.47070 * 120.00442 * 2 1 3 32 32 H 1.07998 * 120.44234 * 0.03050 * 5 4 3 33 33 H 1.08998 * 109.47266 * 225.00799 * 7 6 5 34 34 H 1.09008 * 109.46818 * 345.00494 * 7 6 5 35 35 H 1.08991 * 109.49029 * 296.77449 * 9 8 7 36 36 H 1.09003 * 109.48936 * 56.84364 * 9 8 7 37 37 H 1.09006 * 109.48569 * 298.43640 * 10 9 8 38 38 H 1.08993 * 109.50840 * 178.38049 * 10 9 8 39 39 H 1.08996 * 109.47133 * 53.80214 * 12 11 10 40 40 H 1.09009 * 109.46962 * 173.79938 * 12 11 10 41 41 H 0.97002 * 119.99667 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.48361 * 299.35256 * 21 11 10 43 43 H 1.08995 * 109.49091 * 179.28779 * 21 11 10 44 44 H 1.08992 * 109.49157 * 303.15889 * 22 8 7 45 45 H 1.08998 * 109.48578 * 63.22860 * 22 8 7 46 46 H 1.07997 * 119.59331 * 180.02562 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3517 1.5250 0.0005 5 6 3.8751 2.8117 0.0000 6 6 5.2487 2.9799 0.0011 7 6 5.8564 4.3589 0.0012 8 7 6.3808 4.6630 1.3393 9 6 5.2920 4.7640 2.3212 10 6 5.8838 5.0018 3.7125 11 7 6.6897 6.2305 3.6957 12 6 7.2141 6.5345 5.0338 13 6 6.0715 6.8718 5.9564 14 1 5.0570 6.8610 5.5860 15 6 6.3209 7.1941 7.2736 16 7 7.5563 7.2077 7.7245 17 14 4.9044 7.6116 8.4175 18 1 3.6235 7.5254 7.6711 19 1 4.8833 6.6514 9.5502 20 1 5.0802 8.9902 8.9405 21 6 7.7785 6.1295 2.7137 22 6 7.1867 5.8917 1.3224 23 6 6.0545 1.8483 0.0022 24 17 7.7838 2.0023 0.0029 25 6 5.4647 0.5991 0.0026 26 7 4.1511 0.4717 0.0074 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.2189 3.6694 -0.0003 33 1 6.6684 4.3982 -0.7249 34 1 5.0947 5.0917 -0.2656 35 1 4.6397 5.5961 2.0564 36 1 4.7175 3.8377 2.3238 37 1 6.5147 4.1569 3.9885 38 1 5.0773 5.1059 4.4382 39 1 7.7491 5.6669 5.4200 40 1 7.8949 7.3837 4.9730 41 1 7.7318 7.4349 8.6511 42 1 8.4308 5.2973 2.9786 43 1 8.3530 7.0557 2.7111 44 1 7.9935 5.7875 0.5970 45 1 6.5558 6.7365 1.0464 46 1 6.0861 -0.2842 0.0038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250317619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:38 Heat of formation + Delta-G solvation = 3.085240 kcal Electronic energy + Delta-G solvation = -27185.413132 eV Core-core repulsion = 23329.346297 eV Total energy + Delta-G solvation = -3856.066835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01759 -39.01729 -38.21684 -36.49121 -35.48552 -33.17303 -32.36568 -32.09906 -30.42168 -29.97118 -28.59461 -26.39159 -24.47438 -23.73139 -23.47074 -22.98163 -21.65168 -21.23045 -19.18128 -18.32817 -17.34155 -16.65027 -16.61439 -16.30872 -15.88590 -15.15980 -14.89441 -14.57439 -14.33781 -14.25658 -14.17211 -14.12549 -13.56694 -13.30342 -13.07102 -12.97811 -12.75344 -12.54624 -12.12145 -11.95751 -11.86469 -11.79419 -11.69662 -11.22310 -11.15869 -10.92167 -10.87123 -10.74889 -10.63265 -10.42180 -10.30852 -9.94031 -9.84957 -9.71198 -9.15454 -8.58359 -8.43429 -8.19312 -7.21632 -6.01887 -4.03108 0.77270 0.83554 2.02439 2.71990 3.31290 3.33972 3.38674 3.43389 3.94821 4.10125 4.32029 4.43184 4.59465 4.68345 4.69123 4.77498 4.95936 5.04366 5.07472 5.24572 5.32524 5.34102 5.34250 5.39953 5.46701 5.50577 5.55221 5.71039 5.74772 5.81945 5.84217 5.90065 6.00653 6.06058 6.19635 6.44389 6.59831 6.70119 6.92405 7.13518 7.15265 7.35423 7.38580 7.46109 7.81242 8.10180 8.21817 8.56478 9.04734 9.61146 11.09078 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.002969 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.848318 B = 9427.161137 C =11222.311116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.304 6.304 4 C 0.325 3.675 5 C -0.174 4.174 6 C 0.012 3.988 7 C 0.090 3.910 8 N -0.526 5.526 9 C 0.057 3.943 10 C 0.070 3.930 11 N -0.538 5.538 12 C 0.194 3.806 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.057 3.943 22 C 0.064 3.936 23 C -0.104 4.104 24 Cl -0.041 7.041 25 C 0.150 3.850 26 N -0.530 5.530 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.085 0.915 39 H -0.009 1.009 40 H 0.030 0.970 41 H 0.260 0.740 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -13.647 -20.584 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.211 6.211 4 C 0.146 3.854 5 C -0.195 4.195 6 C 0.004 3.996 7 C -0.038 4.038 8 N -0.251 5.251 9 C -0.071 4.071 10 C -0.059 4.059 11 N -0.264 5.264 12 C 0.069 3.931 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.072 4.072 22 C -0.063 4.063 23 C -0.134 4.134 24 Cl -0.012 7.012 25 C -0.007 4.007 26 N -0.254 5.254 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.009 0.991 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.274 -14.217 -20.400 25.908 hybrid contribution -0.094 0.766 0.807 1.117 sum -7.368 -13.451 -19.593 24.882 Atomic orbital electron populations 1.21828 0.92915 1.02940 1.03448 1.22634 0.94842 0.80869 1.02596 1.86254 1.16495 1.30857 1.87530 1.19759 0.84132 0.89709 0.91775 1.20974 0.94391 0.96229 1.07949 1.19929 0.91569 0.95602 0.92509 1.21038 0.99035 0.90578 0.93125 1.62164 1.22798 1.36156 1.04013 1.22291 0.92192 0.99795 0.92791 1.21953 0.98276 0.91303 0.94370 1.62293 1.21542 1.32917 1.09612 1.19695 0.95468 0.95457 0.82509 1.21190 0.93570 1.45816 0.93880 0.91906 1.24992 0.95697 0.95752 0.98212 1.69971 1.18703 1.49334 1.15799 0.86461 0.82499 0.77937 0.80640 1.19676 1.21115 1.21031 1.22053 0.93752 1.00065 0.91311 1.22154 0.96478 0.89584 0.98127 1.21657 0.87110 0.94951 1.09724 1.98382 1.07869 1.98139 1.96801 1.22344 0.89212 0.95845 0.93254 1.67440 1.05469 1.32837 1.19646 0.91475 0.91650 0.90255 0.91603 0.91432 0.83448 0.88893 0.93106 0.94143 0.91490 0.95344 0.89635 0.99080 0.95232 0.92998 0.95041 0.90960 0.91019 0.94126 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.07 0.57 6.03 37.16 0.22 0.79 16 3 O -0.30 -3.41 10.12 -18.82 -0.19 -3.60 16 4 C 0.32 3.84 7.49 -17.13 -0.13 3.71 16 5 C -0.17 -1.95 9.09 -39.28 -0.36 -2.31 16 6 C 0.01 0.14 4.45 -104.32 -0.46 -0.32 16 7 C 0.09 1.02 4.50 -4.98 -0.02 0.99 16 8 N -0.53 -7.43 4.69 -235.91 -1.11 -8.54 16 9 C 0.06 0.90 5.43 -3.76 -0.02 0.88 16 10 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 11 N -0.54 -11.67 4.70 -235.91 -1.11 -12.78 16 12 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 13 C -0.51 -14.25 8.47 -34.45 -0.29 -14.54 16 14 H 0.06 1.75 7.13 -52.48 -0.37 1.38 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.06 1.03 5.61 -3.76 -0.02 1.01 16 22 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 23 C -0.10 -1.18 6.34 -39.36 -0.25 -1.43 16 24 Cl -0.04 -0.46 27.80 -51.86 -1.44 -1.90 16 25 C 0.15 1.59 10.98 -17.52 -0.19 1.40 16 26 N -0.53 -6.18 9.21 -13.30 -0.12 -6.30 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.15 1.47 8.05 -52.49 -0.42 1.04 16 33 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 34 H 0.05 0.53 7.99 -51.92 -0.41 0.12 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.01 6.73 -51.93 -0.35 0.66 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.83 6.79 -51.93 -0.35 1.47 16 39 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.83 8.03 -51.92 -0.42 0.41 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 44 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -30.94 386.64 -11.07 -42.01 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.34 Total: -3.69 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.30 Total: -1.61 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -1.60 Total: -53.76 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.19 Total: -3.60 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.44 Total: -1.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.94 -11.07 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250317619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.096 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds