Wall clock time and date at job start Tue Mar 31 2020 22:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47445 * 274.99293 * 3 2 1 5 5 H 1.48506 * 109.47043 * 34.98920 * 3 2 1 6 6 H 1.48496 * 109.47404 * 154.98330 * 3 2 1 7 7 C 1.37881 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 173.96633 * 7 2 1 9 9 C 1.50705 * 119.99392 * 354.23595 * 7 2 1 10 10 O 1.42894 * 110.88944 * 299.79209 * 9 7 2 11 11 C 1.55156 * 111.00010 * 175.90919 * 9 7 2 12 12 C 1.54367 * 102.92264 * 206.45343 * 11 9 7 13 13 N 1.47027 * 107.28564 * 22.14605 * 12 11 9 14 14 C 1.34777 * 125.64867 * 181.13053 * 13 12 11 15 15 O 1.21345 * 120.00010 * 179.97438 * 14 13 12 16 16 C 1.49454 * 119.99788 * 359.95106 * 14 13 12 17 17 O 1.21345 * 120.00202 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99788 * 179.97438 * 16 14 13 19 19 C 1.46504 * 119.99827 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46889 * 180.02562 * 19 18 16 21 21 N 1.46504 * 109.47200 * 180.02562 * 20 19 18 22 22 C 1.34770 * 120.00305 * 179.97438 * 21 20 19 23 23 O 1.21287 * 119.99891 * 0.02562 * 22 21 20 24 24 C 1.50694 * 120.00079 * 180.02562 * 22 21 20 25 25 C 1.53002 * 117.49665 * 248.74606 * 24 22 21 26 26 C 1.53003 * 117.49826 * 180.08867 * 24 22 21 27 27 C 1.47424 * 108.70432 * 1.08871 * 13 12 11 28 28 H 0.96998 * 120.00806 * 0.02562 * 1 2 3 29 29 H 0.96708 * 113.99643 * 59.30012 * 10 9 7 30 30 H 1.08998 * 110.72650 * 324.79454 * 11 9 7 31 31 H 1.09008 * 110.71305 * 88.06494 * 11 9 7 32 32 H 1.08996 * 109.85124 * 262.73967 * 12 11 9 33 33 H 1.09004 * 109.90132 * 141.58095 * 12 11 9 34 34 H 0.96999 * 119.99974 * 0.02562 * 18 16 14 35 35 H 1.08995 * 109.47043 * 300.00176 * 19 18 16 36 36 H 1.09002 * 109.47091 * 60.00607 * 19 18 16 37 37 H 1.09007 * 109.47014 * 300.00100 * 20 19 18 38 38 H 1.09000 * 109.47615 * 59.99853 * 20 19 18 39 39 H 0.96999 * 119.99889 * 359.97438 * 21 20 19 40 40 H 1.08998 * 115.55526 * 34.41533 * 24 22 21 41 41 H 1.08995 * 117.50308 * 0.02562 * 25 24 22 42 42 H 1.09004 * 117.49769 * 145.02512 * 25 24 22 43 43 H 1.09004 * 117.49795 * 214.97565 * 26 24 22 44 44 H 1.09002 * 117.50382 * 359.97230 * 26 24 22 45 45 H 1.09000 * 110.36750 * 217.03656 * 27 13 12 46 46 H 1.08997 * 110.36842 * 94.71102 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5032 2.6200 0.8029 6 1 3.5953 1.4122 0.5920 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1965 -0.0988 9 6 1.2568 -2.4959 0.1300 10 8 0.5317 -2.5459 1.3603 11 6 2.2200 -3.7056 0.0024 12 6 1.2979 -4.8274 -0.5212 13 7 0.1417 -4.1805 -1.1588 14 6 -0.9036 -4.8184 -1.7219 15 8 -1.8068 -4.1798 -2.2209 16 6 -0.9500 -6.3122 -1.7321 17 8 -0.0468 -6.9507 -1.2330 18 7 -1.9955 -6.9500 -2.2946 19 6 -2.0408 -8.4143 -2.3051 20 6 -3.3226 -8.8800 -2.9986 21 7 -3.3682 -10.3442 -3.0086 22 6 -4.4137 -10.9821 -3.5711 23 8 -5.3167 -10.3439 -4.0694 24 6 -4.4608 -12.4883 -3.5808 25 6 -4.3100 -13.1910 -4.9315 26 6 -5.6732 -13.1529 -4.2362 27 6 0.3146 -2.7186 -1.0794 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1179 -1.8369 1.4630 30 1 3.0135 -3.4930 -0.7140 31 1 2.6370 -3.9705 0.9741 32 1 0.9634 -5.4493 0.3090 33 1 1.8315 -5.4358 -1.2515 34 1 -2.7177 -6.4396 -2.6932 35 1 -1.1756 -8.8007 -2.8439 36 1 -2.0262 -8.7856 -1.2804 37 1 -4.1880 -8.4935 -2.4601 38 1 -3.3369 -8.5087 -4.0233 39 1 -2.6459 -10.8547 -2.6104 40 1 -4.0292 -12.9779 -2.7078 41 1 -4.1763 -12.5640 -5.8129 42 1 -3.7795 -14.1432 -4.9470 43 1 -6.0389 -14.0799 -3.7945 44 1 -6.4369 -12.5008 -4.6599 45 1 -0.6453 -2.2319 -0.9070 46 1 0.7739 -2.3407 -1.9928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261462354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:45 Heat of formation + Delta-G solvation = -123.042053 kcal Electronic energy + Delta-G solvation = -28792.277740 eV Core-core repulsion = 24490.032451 eV Total energy + Delta-G solvation = -4302.245289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52618 -40.24772 -38.58634 -37.22298 -36.95089 -35.98017 -34.57100 -33.95440 -32.27445 -30.26267 -29.79555 -27.93315 -26.14690 -25.13052 -23.69536 -22.92239 -22.69324 -21.73608 -20.50581 -19.87553 -19.53359 -18.00913 -17.37431 -17.19583 -16.74620 -16.39765 -16.13359 -15.72499 -15.46196 -15.22275 -15.12334 -14.67527 -14.55154 -14.37821 -14.12388 -13.80841 -13.09260 -13.03814 -13.00591 -12.84983 -12.32497 -12.26298 -12.19711 -12.03376 -11.72202 -11.57353 -11.17540 -11.12402 -11.06793 -11.02211 -10.80289 -10.59423 -10.51691 -10.32750 -10.24353 -9.59074 -9.40110 -9.37666 -9.21674 -8.75334 -8.44797 -7.93143 -6.32577 -4.42249 1.72148 2.06081 2.24142 2.90900 3.18064 3.26601 3.30171 3.36989 3.54062 3.86529 4.15285 4.23807 4.26285 4.33702 4.38583 4.61697 4.66147 4.66336 4.94376 5.00118 5.11220 5.25656 5.42940 5.44814 5.45481 5.48293 5.64451 5.75575 5.80730 5.87317 6.02652 6.06765 6.28084 6.49386 6.70616 6.76465 6.82454 6.98521 7.09412 7.18699 7.28102 7.69528 7.76601 7.78849 7.96354 8.00156 8.39621 8.61954 9.25281 9.31283 10.74010 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036417 B = 0.001741 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.696751 B =16078.409313 C =16498.830694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.248 3.752 10 O -0.581 6.581 11 C -0.121 4.121 12 C 0.111 3.889 13 N -0.574 5.574 14 C 0.508 3.492 15 O -0.536 6.536 16 C 0.514 3.486 17 O -0.515 6.515 18 N -0.707 5.707 19 C 0.110 3.890 20 C 0.107 3.893 21 N -0.723 5.723 22 C 0.544 3.456 23 O -0.537 6.537 24 C -0.196 4.196 25 C -0.152 4.152 26 C -0.147 4.147 27 C 0.093 3.907 28 H 0.271 0.729 29 H 0.381 0.619 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.415 0.585 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.405 0.595 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 -23.300 -6.322 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.207 3.793 10 O -0.389 6.389 11 C -0.159 4.159 12 C -0.012 4.012 13 N -0.306 5.306 14 C 0.290 3.710 15 O -0.415 6.415 16 C 0.295 3.705 17 O -0.389 6.389 18 N -0.362 5.362 19 C -0.014 4.014 20 C -0.017 4.017 21 N -0.376 5.376 22 C 0.330 3.670 23 O -0.413 6.413 24 C -0.218 4.218 25 C -0.190 4.190 26 C -0.185 4.185 27 C -0.028 4.028 28 H 0.081 0.919 29 H 0.230 0.770 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.252 0.748 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.240 0.760 40 H 0.144 0.856 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.110 0.890 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.735 -23.378 -6.506 24.935 hybrid contribution 0.132 1.375 -0.049 1.383 sum -5.603 -22.003 -6.555 23.632 Atomic orbital electron populations 1.69744 1.05993 1.27993 1.49331 1.25091 0.95044 0.99842 0.93255 0.86380 0.79947 0.82403 0.78138 1.20513 1.20911 1.19596 1.21473 0.94206 0.90046 1.51973 0.91321 1.19639 0.86938 0.92038 0.80680 1.86129 1.57101 1.55572 1.40078 1.22719 0.97445 0.94678 1.01076 1.22159 0.86430 0.95583 0.96993 1.48693 1.19151 1.10266 1.52452 1.19466 0.83037 0.87262 0.81267 1.90737 1.36737 1.67525 1.46521 1.20449 0.82135 0.89393 0.78536 1.90732 1.36450 1.68167 1.43558 1.45493 1.24312 1.06569 1.59857 1.21437 0.97577 0.80561 1.01864 1.21458 0.97881 0.80361 1.02048 1.45683 1.24146 1.06882 1.60877 1.19680 0.81303 0.88747 0.77225 1.90732 1.37134 1.68056 1.45396 1.22185 1.07909 0.91792 0.99871 1.22973 1.00530 1.01754 0.93719 1.22986 0.91468 1.01968 1.02053 1.23533 1.03263 0.74897 1.01085 0.91941 0.76971 0.90331 0.90489 0.91180 0.91744 0.74836 0.90364 0.90317 0.90279 0.90345 0.76042 0.85646 0.88164 0.87625 0.87778 0.87320 0.89002 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.24 10.70 55.43 0.59 -22.65 16 2 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 3 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.72 8.25 -34.44 -0.28 -14.00 16 8 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.25 5.90 0.88 -89.62 -0.08 5.82 16 10 O -0.58 -14.53 13.17 -35.23 -0.46 -14.99 16 11 C -0.12 -2.42 6.13 -24.87 -0.15 -2.58 16 12 C 0.11 2.10 5.49 -3.04 -0.02 2.08 16 13 N -0.57 -11.95 3.33 -170.99 -0.57 -12.52 16 14 C 0.51 9.97 7.91 -11.58 -0.09 9.88 16 15 O -0.54 -11.54 16.73 5.50 0.09 -11.44 16 16 C 0.51 8.26 7.86 -11.58 -0.09 8.16 16 17 O -0.51 -8.83 14.12 5.50 0.08 -8.75 16 18 N -0.71 -8.47 5.55 -60.73 -0.34 -8.81 16 19 C 0.11 0.95 5.79 -4.04 -0.02 0.93 16 20 C 0.11 0.84 5.79 -4.04 -0.02 0.82 16 21 N -0.72 -4.91 5.56 -60.29 -0.33 -5.25 16 22 C 0.54 4.85 7.61 -10.99 -0.08 4.76 16 23 O -0.54 -7.04 16.26 5.55 0.09 -6.95 16 24 C -0.20 -1.15 6.19 -91.77 -0.57 -1.72 16 25 C -0.15 -0.76 10.24 -26.69 -0.27 -1.03 16 26 C -0.15 -0.85 10.05 -26.69 -0.27 -1.12 16 27 C 0.09 2.18 5.39 -2.53 -0.01 2.17 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.38 9.70 7.54 45.56 0.34 10.05 16 30 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 31 H 0.08 1.48 8.14 -51.92 -0.42 1.05 16 32 H 0.07 1.33 7.58 -51.93 -0.39 0.94 16 33 H 0.06 1.11 7.70 -51.93 -0.40 0.71 16 34 H 0.42 4.68 7.94 -40.82 -0.32 4.35 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.40 1.63 8.47 -40.82 -0.35 1.29 16 40 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.11 0.82 7.67 -51.93 -0.40 0.42 16 45 H 0.09 2.40 7.31 -51.93 -0.38 2.02 16 46 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -31.81 388.77 -8.16 -39.96 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -6.08 Total: 14.71 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: -2.06 Total: 15.89 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.65 Total: -49.23 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -0.20 Total: -42.14 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.81 -8.16 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261462354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.077 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds