Wall clock time and date at job start Tue Mar 31 2020 22:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47445 * 274.99293 * 3 2 1 5 5 H 1.48506 * 109.47043 * 34.98920 * 3 2 1 6 6 H 1.48496 * 109.47404 * 154.98330 * 3 2 1 7 7 C 1.37881 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 173.96633 * 7 2 1 9 9 C 1.50705 * 119.99392 * 354.23595 * 7 2 1 10 10 O 1.42894 * 110.88944 * 299.79209 * 9 7 2 11 11 C 1.55156 * 111.00010 * 175.90919 * 9 7 2 12 12 C 1.54367 * 102.92264 * 206.45343 * 11 9 7 13 13 N 1.47027 * 107.28564 * 22.14605 * 12 11 9 14 14 C 1.34777 * 125.64867 * 181.13053 * 13 12 11 15 15 O 1.21345 * 120.00010 * 179.97438 * 14 13 12 16 16 C 1.49454 * 119.99788 * 359.95106 * 14 13 12 17 17 O 1.21345 * 120.00202 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99788 * 179.97438 * 16 14 13 19 19 C 1.46504 * 119.99827 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46889 * 180.02562 * 19 18 16 21 21 N 1.46504 * 109.47200 * 180.02562 * 20 19 18 22 22 C 1.34770 * 120.00305 * 179.97438 * 21 20 19 23 23 O 1.21287 * 119.99891 * 0.02562 * 22 21 20 24 24 C 1.50694 * 120.00079 * 180.02562 * 22 21 20 25 25 C 1.53002 * 117.49665 * 248.74606 * 24 22 21 26 26 C 1.53003 * 117.49826 * 180.08867 * 24 22 21 27 27 C 1.47424 * 108.70432 * 1.08871 * 13 12 11 28 28 H 0.96998 * 120.00806 * 0.02562 * 1 2 3 29 29 H 0.96708 * 113.99643 * 59.30012 * 10 9 7 30 30 H 1.08998 * 110.72650 * 324.79454 * 11 9 7 31 31 H 1.09008 * 110.71305 * 88.06494 * 11 9 7 32 32 H 1.08996 * 109.85124 * 262.73967 * 12 11 9 33 33 H 1.09004 * 109.90132 * 141.58095 * 12 11 9 34 34 H 0.96999 * 119.99974 * 0.02562 * 18 16 14 35 35 H 1.08995 * 109.47043 * 300.00176 * 19 18 16 36 36 H 1.09002 * 109.47091 * 60.00607 * 19 18 16 37 37 H 1.09007 * 109.47014 * 300.00100 * 20 19 18 38 38 H 1.09000 * 109.47615 * 59.99853 * 20 19 18 39 39 H 0.96999 * 119.99889 * 359.97438 * 21 20 19 40 40 H 1.08998 * 115.55526 * 34.41533 * 24 22 21 41 41 H 1.08995 * 117.50308 * 0.02562 * 25 24 22 42 42 H 1.09004 * 117.49769 * 145.02512 * 25 24 22 43 43 H 1.09004 * 117.49795 * 214.97565 * 26 24 22 44 44 H 1.09002 * 117.50382 * 359.97230 * 26 24 22 45 45 H 1.09000 * 110.36750 * 217.03656 * 27 13 12 46 46 H 1.08997 * 110.36842 * 94.71102 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5032 2.6200 0.8029 6 1 3.5953 1.4122 0.5920 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1965 -0.0988 9 6 1.2568 -2.4959 0.1300 10 8 0.5317 -2.5459 1.3603 11 6 2.2200 -3.7056 0.0024 12 6 1.2979 -4.8274 -0.5212 13 7 0.1417 -4.1805 -1.1588 14 6 -0.9036 -4.8184 -1.7219 15 8 -1.8068 -4.1798 -2.2209 16 6 -0.9500 -6.3122 -1.7321 17 8 -0.0468 -6.9507 -1.2330 18 7 -1.9955 -6.9500 -2.2946 19 6 -2.0408 -8.4143 -2.3051 20 6 -3.3226 -8.8800 -2.9986 21 7 -3.3682 -10.3442 -3.0086 22 6 -4.4137 -10.9821 -3.5711 23 8 -5.3167 -10.3439 -4.0694 24 6 -4.4608 -12.4883 -3.5808 25 6 -4.3100 -13.1910 -4.9315 26 6 -5.6732 -13.1529 -4.2362 27 6 0.3146 -2.7186 -1.0794 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1179 -1.8369 1.4630 30 1 3.0135 -3.4930 -0.7140 31 1 2.6370 -3.9705 0.9741 32 1 0.9634 -5.4493 0.3090 33 1 1.8315 -5.4358 -1.2515 34 1 -2.7177 -6.4396 -2.6932 35 1 -1.1756 -8.8007 -2.8439 36 1 -2.0262 -8.7856 -1.2804 37 1 -4.1880 -8.4935 -2.4601 38 1 -3.3369 -8.5087 -4.0233 39 1 -2.6459 -10.8547 -2.6104 40 1 -4.0292 -12.9779 -2.7078 41 1 -4.1763 -12.5640 -5.8129 42 1 -3.7795 -14.1432 -4.9470 43 1 -6.0389 -14.0799 -3.7945 44 1 -6.4369 -12.5008 -4.6599 45 1 -0.6453 -2.2319 -0.9070 46 1 0.7739 -2.3407 -1.9928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261462354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:44 Heat of formation + Delta-G solvation = -149.368267 kcal Electronic energy + Delta-G solvation = -28793.419331 eV Core-core repulsion = 24490.032451 eV Total energy + Delta-G solvation = -4303.386880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84582 -41.02529 -40.05998 -38.89304 -37.59467 -36.80795 -36.12693 -35.06401 -34.24064 -31.95678 -30.66726 -29.68242 -27.72709 -26.22592 -24.97696 -23.67074 -23.29319 -22.98133 -21.56644 -21.15917 -20.97289 -19.19610 -18.87183 -18.45443 -18.02838 -17.44553 -17.14825 -17.00213 -16.78556 -16.49630 -16.25538 -16.08214 -15.64689 -15.43281 -15.16099 -14.87365 -14.84489 -14.67774 -14.43937 -13.96501 -13.57731 -13.55580 -13.33145 -13.02184 -12.98152 -12.83504 -12.71949 -12.52563 -12.43866 -12.34599 -12.23860 -12.11148 -11.54781 -11.45853 -11.19867 -11.05644 -10.76304 -10.63487 -10.45709 -10.32646 -10.22425 -9.64318 -8.25701 -6.42507 0.31135 1.13163 1.41909 1.42841 1.46397 1.56210 2.02127 2.09610 2.38296 2.61013 2.92186 2.99911 3.29155 3.52113 3.73981 3.76781 3.88494 3.93651 3.98876 4.05828 4.15753 4.23457 4.31040 4.33452 4.66292 4.72368 4.73185 4.75903 4.76008 4.93399 4.98325 5.02362 5.04889 5.06830 5.15683 5.22673 5.29812 5.35267 5.43203 5.74329 5.90454 6.04324 6.35847 6.44646 6.57413 6.66835 6.88507 7.15817 7.26023 7.32822 8.79371 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036417 B = 0.001741 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.696751 B =16078.409313 C =16498.830694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.232 3.768 10 O -0.586 6.586 11 C -0.115 4.115 12 C 0.119 3.881 13 N -0.583 5.583 14 C 0.500 3.500 15 O -0.562 6.562 16 C 0.523 3.477 17 O -0.523 6.523 18 N -0.690 5.690 19 C 0.115 3.885 20 C 0.114 3.886 21 N -0.709 5.709 22 C 0.537 3.463 23 O -0.588 6.588 24 C -0.197 4.197 25 C -0.142 4.142 26 C -0.157 4.157 27 C 0.107 3.893 28 H 0.270 0.730 29 H 0.374 0.626 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.419 0.581 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.421 0.579 40 H 0.156 0.844 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 -25.621 -6.249 26.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.172 4.172 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.153 4.153 12 C -0.003 4.003 13 N -0.315 5.315 14 C 0.284 3.716 15 O -0.443 6.443 16 C 0.303 3.697 17 O -0.400 6.400 18 N -0.345 5.345 19 C -0.007 4.007 20 C -0.011 4.011 21 N -0.362 5.362 22 C 0.325 3.675 23 O -0.468 6.468 24 C -0.218 4.218 25 C -0.179 4.179 26 C -0.195 4.195 27 C -0.015 4.015 28 H 0.080 0.920 29 H 0.222 0.778 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.256 0.744 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.259 0.741 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.396 -25.761 -6.428 26.912 hybrid contribution -0.343 2.068 -0.107 2.099 sum -4.740 -23.692 -6.535 25.030 Atomic orbital electron populations 1.69857 1.07104 1.28513 1.49799 1.25801 0.95733 1.02755 0.92948 0.85443 0.78847 0.78730 0.78001 1.20294 1.20935 1.19063 1.21778 0.94503 0.91112 1.52116 0.91109 1.19871 0.87550 0.93336 0.80119 1.86121 1.57048 1.55250 1.40945 1.22733 0.97202 0.93209 1.02144 1.22189 0.85601 0.95058 0.97452 1.48733 1.20340 1.09262 1.53160 1.20224 0.82086 0.89198 0.80131 1.90715 1.37494 1.68718 1.47327 1.19654 0.83195 0.87376 0.79506 1.90729 1.37086 1.67553 1.44587 1.45462 1.22895 1.08149 1.57954 1.21587 0.98310 0.78035 1.02818 1.21289 0.97189 0.81147 1.01489 1.45563 1.24159 1.06414 1.60095 1.20297 0.80760 0.90118 0.76315 1.90712 1.39063 1.69333 1.47694 1.22286 1.08315 0.89639 1.01547 1.23056 0.99898 1.02374 0.92615 1.23032 0.91315 1.02426 1.02692 1.23074 1.01229 0.76711 1.00472 0.92039 0.77762 0.88930 0.89546 0.91056 0.89496 0.74386 0.88967 0.89225 0.91080 0.90940 0.74094 0.82626 0.89529 0.84949 0.85571 0.89891 0.92393 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.62 10.70 21.45 0.23 -48.39 16 2 C 0.03 1.48 5.27 84.66 0.45 1.92 16 3 Si 0.96 40.95 29.54 68.60 2.03 42.97 16 4 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.56 -28.41 8.25 25.60 0.21 -28.20 16 8 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 9 C 0.23 11.09 0.88 -10.14 -0.01 11.08 16 10 O -0.59 -29.74 13.17 -148.98 -1.96 -31.70 16 11 C -0.12 -4.46 6.13 31.80 0.19 -4.26 16 12 C 0.12 4.31 5.49 86.74 0.48 4.78 16 13 N -0.58 -24.23 3.33 -813.26 -2.71 -26.93 16 14 C 0.50 19.55 7.91 87.27 0.69 20.24 16 15 O -0.56 -24.57 16.73 -3.23 -0.05 -24.62 16 16 C 0.52 16.01 7.86 87.27 0.69 16.69 16 17 O -0.52 -16.72 14.12 -3.23 -0.05 -16.77 16 18 N -0.69 -15.41 5.55 -464.41 -2.58 -17.98 16 19 C 0.12 1.71 5.79 86.38 0.50 2.21 16 20 C 0.11 1.63 5.79 86.38 0.50 2.13 16 21 N -0.71 -8.26 5.56 -463.05 -2.57 -10.84 16 22 C 0.54 9.04 7.61 87.66 0.67 9.70 16 23 O -0.59 -15.69 16.26 -3.05 -0.05 -15.74 16 24 C -0.20 -1.90 6.19 -11.54 -0.07 -1.97 16 25 C -0.14 -1.13 10.24 30.62 0.31 -0.82 16 26 C -0.16 -1.63 10.05 30.62 0.31 -1.32 16 27 C 0.11 5.15 5.39 86.86 0.47 5.62 16 28 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.37 19.67 7.54 -74.05 -0.56 19.12 16 30 H 0.09 3.29 8.03 -2.39 -0.02 3.27 16 31 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 32 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 33 H 0.09 2.78 7.70 -2.39 -0.02 2.76 16 34 H 0.42 9.01 7.94 -92.71 -0.74 8.27 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.42 2.13 8.47 -92.71 -0.79 1.35 16 40 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.13 0.36 8.14 -2.38 -0.02 0.34 16 43 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 1.30 7.67 -2.39 -0.02 1.28 16 45 H 0.06 3.15 7.31 -2.39 -0.02 3.14 16 46 H 0.06 2.74 8.03 -2.39 -0.02 2.72 16 Total: -1.00 -70.00 388.77 -3.37 -73.36 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -1.04 Total: 38.83 kcal Atomic # 6 Polarization: 32.43 SS G_CDS: 5.38 Total: 37.81 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -7.63 Total: -104.15 kcal Atomic # 8 Polarization: -86.72 SS G_CDS: -2.11 Total: -88.83 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -70.00 -3.37 -73.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261462354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.004 kcal (2) G-P(sol) polarization free energy of solvation -69.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds