Wall clock time and date at job start Tue Mar 31 2020 22:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40440 * 126.82722 * 2 1 4 4 C 1.30706 * 106.79701 * 180.02562 * 3 2 1 5 5 N 1.33248 * 108.94741 * 359.76052 * 4 3 2 6 6 C 1.30833 * 109.82530 * 0.40162 * 5 4 3 7 7 C 1.50694 * 125.96282 * 179.86398 * 6 5 4 8 8 N 1.46896 * 109.47486 * 269.69362 * 7 6 5 9 9 C 1.46902 * 111.00139 * 179.97438 * 8 7 6 10 10 H 1.08998 * 112.85016 * 336.19076 * 9 8 7 11 11 C 1.53777 * 113.61371 * 107.50347 * 9 8 7 12 12 C 1.53785 * 87.08241 * 139.97943 * 11 9 8 13 13 H 1.09002 * 113.61570 * 220.01842 * 12 11 9 14 14 C 1.52995 * 113.69093 * 89.12408 * 12 11 9 15 15 N 1.46500 * 109.47108 * 85.93603 * 14 12 11 16 16 C 1.34783 * 120.00119 * 179.97438 * 15 14 12 17 17 O 1.21281 * 119.99624 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00012 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.47009 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99822 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00029 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00084 * 179.97438 * 20 19 18 23 23 N 1.31641 * 119.99602 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00417 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46884 * 59.99984 * 24 22 20 26 26 H 1.48501 * 109.47469 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47010 * 300.00469 * 24 22 20 28 28 C 1.53781 * 87.08241 * 334.56547 * 12 11 9 29 29 H 1.09000 * 109.47059 * 269.95977 * 1 2 3 30 30 H 1.08996 * 109.47331 * 29.96104 * 1 2 3 31 31 H 1.09003 * 109.47346 * 149.96345 * 1 2 3 32 32 H 1.07996 * 125.53013 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47566 * 149.68956 * 7 6 5 34 34 H 1.09003 * 109.46796 * 29.69312 * 7 6 5 35 35 H 1.00903 * 111.00041 * 56.04305 * 8 7 6 36 36 H 1.08999 * 113.61947 * 25.43369 * 11 9 8 37 37 H 1.08997 * 113.61348 * 254.52584 * 11 9 8 38 38 H 1.09005 * 109.47501 * 205.93599 * 14 12 11 39 39 H 1.09004 * 109.47494 * 325.93611 * 14 12 11 40 40 H 0.96997 * 120.00462 * 0.02562 * 15 14 12 41 41 H 1.09000 * 109.47601 * 300.00131 * 18 16 15 42 42 H 1.08996 * 109.46810 * 60.00601 * 18 16 15 43 43 H 0.96999 * 119.99707 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.61578 * 139.97748 * 28 12 11 45 45 H 1.08997 * 113.61673 * 270.88717 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1241 0.0000 4 6 3.5348 0.6765 -0.0006 5 7 3.5096 -0.6558 0.0044 6 6 2.2707 -1.0762 -0.0005 7 6 1.8246 -2.5156 -0.0003 8 7 1.6787 -2.9833 -1.3851 9 6 1.2445 -4.3862 -1.4240 10 1 1.5003 -4.9337 -0.5169 11 6 -0.2182 -4.5663 -1.8629 12 6 0.2564 -5.7866 -2.6696 13 1 -0.2192 -5.8762 -3.6463 14 6 0.2348 -7.0944 -1.8761 15 7 -1.0996 -7.6935 -1.9582 16 6 -1.3550 -8.8589 -1.3311 17 8 -0.4801 -9.4114 -0.6985 18 6 -2.7278 -9.4748 -1.4152 19 16 -2.7533 -11.0221 -0.4765 20 6 -4.4254 -11.5118 -0.7393 21 1 -5.0808 -10.8960 -1.3373 22 6 -4.9000 -12.6895 -0.1786 23 7 -4.1010 -13.4403 0.5499 24 14 -6.6724 -13.2091 -0.4578 25 1 -6.9143 -13.3815 -1.9128 26 1 -6.9277 -14.4940 0.2416 27 1 -7.5840 -12.1650 0.0753 28 6 1.6404 -5.1179 -2.7175 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3634 -0.8897 -0.5144 32 1 4.4254 1.2872 -0.0003 33 1 0.8673 -2.5993 0.5142 34 1 2.5675 -3.1261 0.5131 35 1 2.5358 -2.8559 -1.9020 36 1 -0.5917 -3.7514 -2.4830 37 1 -0.8917 -4.8194 -1.0441 38 1 0.9690 -7.7843 -2.2923 39 1 0.4780 -6.8908 -0.8332 40 1 -1.7992 -7.2518 -2.4645 41 1 -3.4617 -8.7851 -0.9982 42 1 -2.9715 -9.6780 -2.4580 43 1 -4.4325 -14.2635 0.9414 44 1 2.4674 -5.8162 -2.5885 45 1 1.7752 -4.4537 -3.5711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264414439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:45 Heat of formation + Delta-G solvation = 47.496889 kcal Electronic energy + Delta-G solvation = -25368.912908 eV Core-core repulsion = 21549.108364 eV Total energy + Delta-G solvation = -3819.804544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.10924 -40.97028 -39.93881 -36.42944 -35.15264 -34.74528 -34.56349 -32.23347 -31.15249 -28.64944 -27.91905 -27.53360 -26.72460 -26.08657 -23.41550 -23.01784 -21.73753 -21.45782 -20.09632 -19.47554 -18.13402 -17.72580 -17.60935 -17.04597 -16.86508 -16.82564 -16.42642 -16.18688 -15.89866 -15.63654 -15.46228 -15.01261 -14.71956 -14.59803 -14.42299 -14.05728 -13.94114 -13.79692 -13.42443 -13.15318 -13.14977 -13.07424 -12.85312 -12.71126 -12.66765 -12.51517 -11.89027 -11.70465 -11.38645 -11.17839 -11.11328 -11.10265 -10.90313 -10.78074 -10.58952 -10.25806 -10.06452 -9.53733 -8.64984 -8.33043 -6.11125 0.53492 1.28956 1.39348 1.45158 1.48768 1.58445 1.64895 1.86170 2.28020 2.33550 2.94104 3.01065 3.33829 3.36590 3.56459 3.58812 3.76204 3.80650 3.81423 3.91897 4.07753 4.25663 4.32557 4.36860 4.38128 4.43725 4.54127 4.54565 4.62406 4.68743 4.77184 4.86499 4.97092 5.05649 5.19144 5.25961 5.28285 5.36068 5.43053 5.43117 5.53386 5.78676 5.97422 6.21069 6.23710 6.55971 7.05879 7.08205 7.29035 8.75839 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.001553 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.204032 B =18025.575588 C =18489.483169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.370 5.370 3 N -0.351 5.351 4 C 0.192 3.808 5 N -0.571 5.571 6 C 0.279 3.721 7 C 0.138 3.862 8 N -0.667 5.667 9 C 0.058 3.942 10 H 0.076 0.924 11 C -0.113 4.113 12 C -0.116 4.116 13 H 0.101 0.899 14 C 0.138 3.862 15 N -0.709 5.709 16 C 0.532 3.468 17 O -0.569 6.569 18 C -0.130 4.130 19 S -0.154 6.154 20 C -0.548 4.548 21 H 0.084 0.916 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.262 1.262 28 C -0.124 4.124 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.242 0.758 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.350 0.650 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 29.066 -7.138 31.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.161 5.161 3 N -0.180 5.180 4 C -0.111 4.111 5 N -0.300 5.300 6 C 0.002 3.998 7 C 0.007 3.993 8 N -0.300 5.300 9 C -0.051 4.051 10 H 0.094 0.906 11 C -0.151 4.151 12 C -0.135 4.135 13 H 0.119 0.881 14 C 0.014 3.986 15 N -0.363 5.363 16 C 0.318 3.682 17 O -0.448 6.448 18 C -0.281 4.281 19 S 0.073 5.927 20 C -0.695 4.695 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.163 4.163 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.258 0.742 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.865 28.853 -6.045 31.086 hybrid contribution -1.234 -0.269 -0.446 1.339 sum 8.632 28.583 -6.492 30.556 Atomic orbital electron populations 1.22310 0.71582 1.06473 1.05056 1.50438 1.09236 1.03314 1.53067 1.77994 1.02839 1.09641 1.27537 1.26525 0.96506 0.90428 0.97596 1.70478 1.20774 1.12367 1.26372 1.24511 0.86007 0.93277 0.96033 1.20502 1.02450 0.83936 0.92447 1.60677 1.38433 1.19927 1.10981 1.23156 0.97410 0.86521 0.98039 0.90625 1.23084 0.95526 0.96855 0.99636 1.22290 0.99167 0.92040 1.00035 0.88094 1.21197 0.83475 0.93760 1.00168 1.45712 1.14791 1.22376 1.53423 1.20060 0.88823 0.81062 0.78247 1.90694 1.48260 1.62921 1.42881 1.23375 0.97653 1.01354 1.05697 1.85586 1.17203 1.22541 1.67326 1.23188 0.96710 1.11330 1.38305 0.89834 1.26125 1.03819 0.95258 0.93909 1.70184 1.38071 1.14007 1.32522 0.85009 0.76425 0.77641 0.78953 1.18672 1.20497 1.18617 1.23177 0.96222 0.98847 0.98008 0.88917 0.88522 0.86622 0.74159 0.87042 0.91104 0.83117 0.88107 0.91663 0.92511 0.92349 0.74601 0.87119 0.87225 0.92031 0.91049 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.16 127.77 1.43 2.06 16 2 N -0.37 -5.69 4.04 -359.88 -1.45 -7.15 16 3 N -0.35 -6.77 12.70 -61.25 -0.78 -7.55 16 4 C 0.19 3.31 13.03 180.76 2.36 5.66 16 5 N -0.57 -10.98 11.19 -191.78 -2.15 -13.12 16 6 C 0.28 4.38 7.50 138.22 1.04 5.42 16 7 C 0.14 1.45 5.65 85.56 0.48 1.93 16 8 N -0.67 -6.35 6.55 -492.85 -3.23 -9.58 16 9 C 0.06 0.56 3.79 45.44 0.17 0.73 16 10 H 0.08 0.86 7.43 -2.39 -0.02 0.84 16 11 C -0.11 -1.05 7.43 31.12 0.23 -0.82 16 12 C -0.12 -1.25 3.94 -10.27 -0.04 -1.30 16 13 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 14 C 0.14 2.62 5.35 86.38 0.46 3.08 16 15 N -0.71 -15.96 5.56 -463.05 -2.57 -18.54 16 16 C 0.53 18.73 7.85 87.65 0.69 19.42 16 17 O -0.57 -25.74 15.86 -3.03 -0.05 -25.79 16 18 C -0.13 -4.94 6.16 71.23 0.44 -4.50 16 19 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 20 C -0.55 -30.86 9.50 67.96 0.65 -30.21 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 24 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 28 C -0.12 -1.14 7.24 31.12 0.23 -0.91 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.12 0.47 7.72 -2.39 -0.02 0.46 16 32 H 0.24 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.11 0.82 7.76 -2.39 -0.02 0.80 16 34 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 35 H 0.35 3.68 8.54 -89.69 -0.77 2.91 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.71 8.10 -2.39 -0.02 0.70 16 38 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.06 1.24 7.38 -2.39 -0.02 1.23 16 40 H 0.42 6.45 8.47 -92.71 -0.79 5.66 16 41 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 42 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.07 0.73 8.10 -2.39 -0.02 0.71 16 45 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -82.39 395.58 -1.02 -83.40 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.53 Total: 16.46 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 8.59 Total: 1.79 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -9.89 Total: -111.26 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -82.39 -1.02 -83.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264414439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.901 kcal (2) G-P(sol) polarization free energy of solvation -82.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds