Wall clock time and date at job start Tue Mar 31 2020 22:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47316 * 2 1 4 4 N 1.28713 * 125.86639 * 269.96927 * 3 2 1 5 5 N 1.28631 * 110.17684 * 180.02562 * 4 3 2 6 6 C 1.33770 * 108.88741 * 359.76955 * 5 4 3 7 7 C 1.35310 * 125.87056 * 89.99943 * 3 2 1 8 8 C 1.50700 * 126.91191 * 359.93720 * 7 3 2 9 9 N 1.46903 * 109.47519 * 275.00423 * 8 7 3 10 10 C 1.46897 * 111.00012 * 179.97438 * 9 8 7 11 11 H 1.09004 * 110.78456 * 31.76466 * 10 9 8 12 12 C 1.55156 * 110.71839 * 155.00108 * 10 9 8 13 13 C 1.54908 * 101.58336 * 153.86686 * 12 10 9 14 14 N 1.47422 * 104.83059 * 322.98859 * 13 12 10 15 15 C 1.34781 * 125.65200 * 204.09240 * 14 13 12 16 16 O 1.21274 * 120.00344 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99423 * 0.02562 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47027 * 108.70246 * 24.35933 * 14 13 12 28 28 H 1.09000 * 109.46559 * 60.00333 * 1 2 3 29 29 H 1.08996 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47087 * 300.00609 * 1 2 3 31 31 H 1.08997 * 109.47087 * 239.99391 * 2 1 3 32 32 H 1.09008 * 109.47045 * 120.00060 * 2 1 3 33 33 H 1.08001 * 126.75347 * 180.23672 * 6 5 4 34 34 H 1.09002 * 109.47280 * 155.00075 * 8 7 3 35 35 H 1.09003 * 109.47014 * 35.00363 * 8 7 3 36 36 H 1.00900 * 110.99580 * 56.04187 * 9 8 7 37 37 H 1.09005 * 111.00410 * 35.78816 * 12 10 9 38 38 H 1.09007 * 111.03810 * 271.95462 * 12 10 9 39 39 H 1.09000 * 110.36458 * 204.15429 * 13 12 10 40 40 H 1.08998 * 110.36968 * 81.82844 * 13 12 10 41 41 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 42 42 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.88355 * 118.13246 * 27 14 13 45 45 H 1.09008 * 109.88094 * 239.29537 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2703 2.0920 -1.0431 5 7 2.6835 3.2594 -0.6952 6 6 2.7033 3.3316 0.6404 7 6 2.2827 2.1287 1.0965 8 6 2.1327 1.7086 2.5359 9 7 0.7451 1.9243 2.9671 10 6 0.5610 1.5244 4.3685 11 1 1.4740 1.6889 4.9408 12 6 -0.6307 2.2872 5.0051 13 6 -1.0714 1.3032 6.1174 14 7 -0.8901 -0.0365 5.5296 15 6 -1.5392 -1.1552 5.9089 16 8 -1.3093 -2.2079 5.3525 17 6 -2.5508 -1.0977 7.0245 18 16 -3.2429 -2.7478 7.2969 19 6 -4.3613 -2.3971 8.6125 20 1 -4.4453 -1.3911 8.9962 21 6 -5.1344 -3.4139 9.1558 22 7 -5.0317 -4.6401 8.6885 23 14 -6.3196 -3.0422 10.5511 24 1 -7.0216 -4.2887 10.9494 25 1 -5.5647 -2.5059 11.7120 26 1 -7.3149 -2.0365 10.1005 27 6 0.1207 0.0484 4.4653 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.9988 4.1817 1.2373 34 1 2.8031 2.3007 3.1590 35 1 2.3836 0.6524 2.6342 36 1 0.0993 1.4368 2.3644 37 1 -1.4295 2.4396 4.2792 38 1 -0.3054 3.2369 5.4300 39 1 -2.1179 1.4660 6.3751 40 1 -0.4403 1.4194 6.9985 41 1 -3.3505 -0.4079 6.7547 42 1 -2.0657 -0.7523 7.9374 43 1 -5.5717 -5.3507 9.0684 44 1 0.9755 -0.5800 4.7149 45 1 -0.3120 -0.2703 3.5168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267004246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:24 Heat of formation + Delta-G solvation = 70.877912 kcal Electronic energy + Delta-G solvation = -26501.158238 eV Core-core repulsion = 22682.367572 eV Total energy + Delta-G solvation = -3818.790667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.63429 -40.06846 -37.97030 -36.16592 -35.36813 -32.47774 -32.32720 -31.16282 -30.52580 -29.75361 -27.88725 -25.70428 -25.40191 -24.85459 -23.30555 -22.90169 -21.28218 -20.77448 -19.47740 -17.93214 -17.69822 -17.12714 -16.76809 -16.45177 -16.05309 -15.56246 -15.08754 -15.03479 -14.84492 -14.49154 -14.26474 -14.03842 -13.96671 -13.52436 -13.42376 -13.31469 -12.87855 -12.70285 -12.58521 -12.53149 -12.15015 -12.04954 -11.90967 -11.88277 -11.73532 -11.19045 -11.11834 -11.09109 -11.07343 -10.81160 -10.47991 -9.88097 -9.65021 -9.52727 -9.10499 -9.05664 -8.63658 -8.30443 -6.56410 -6.26280 -3.97681 1.15704 1.91976 2.25115 2.77694 2.94784 3.20081 3.21179 3.25599 3.47122 3.61727 3.83951 3.99050 4.14528 4.17916 4.22101 4.26052 4.31955 4.50215 4.62159 4.67003 4.87827 4.93818 4.95448 4.96543 5.03724 5.07582 5.08919 5.17537 5.33663 5.36791 5.44293 5.48724 5.52442 5.53485 5.65756 5.75516 5.83619 5.85624 6.06306 6.16974 6.25947 6.36612 6.67055 7.52385 7.55041 8.17834 8.30268 8.43629 9.18902 10.81072 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026657 B = 0.001971 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.128984 B =14201.289550 C =14863.414360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.284 5.284 4 N -0.084 5.084 5 N -0.274 5.274 6 C -0.030 4.030 7 C -0.019 4.019 8 C 0.130 3.870 9 N -0.670 5.670 10 C 0.075 3.925 11 H 0.099 0.901 12 C -0.118 4.118 13 C 0.098 3.902 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.147 4.147 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.283 1.283 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.083 3.917 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.190 0.810 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.343 0.657 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.066 0.934 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.852 15.318 -12.040 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.016 4.016 3 N -0.079 5.079 4 N -0.063 5.063 5 N -0.139 5.139 6 C -0.188 4.188 7 C -0.151 4.151 8 C -0.001 4.001 9 N -0.302 5.302 10 C -0.036 4.036 11 H 0.118 0.882 12 C -0.157 4.157 13 C -0.026 4.026 14 N -0.362 5.362 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.208 1.208 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.042 4.042 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.207 0.793 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.164 0.836 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.203 14.150 -14.262 25.194 hybrid contribution -1.083 0.319 2.647 2.877 sum 14.119 14.468 -11.615 23.315 Atomic orbital electron populations 1.22230 0.92514 1.04573 1.03621 1.22180 0.96687 0.76716 1.06055 1.47498 1.42446 1.13441 1.04548 1.78319 1.16908 0.99274 1.11799 1.75120 1.15859 1.10334 1.12569 1.23379 1.05800 0.97851 0.91792 1.22032 1.08161 0.93646 0.91279 1.20431 0.91728 1.00062 0.87831 1.60733 1.04233 1.62487 1.02792 1.22725 0.99788 0.91944 0.89136 0.88247 1.22787 0.97535 0.98002 0.97343 1.22377 1.02445 0.81390 0.96353 1.48421 1.41843 1.08764 1.37177 1.20092 0.80711 0.81791 0.83707 1.90704 1.64418 1.28670 1.55237 1.23507 0.99577 1.08295 0.98335 1.85392 1.49806 1.01641 1.46604 1.22808 1.26613 0.97857 1.21138 0.90937 1.25000 0.96825 0.94428 0.97317 1.70007 1.39133 1.00310 1.40816 0.86215 0.80227 0.77869 0.81152 1.20786 1.19901 1.19906 1.22610 0.92200 0.97344 0.92044 0.90853 0.89040 0.91848 0.87119 0.87874 0.79327 0.87489 0.93363 0.83557 0.90040 0.89243 0.89930 0.91118 0.89231 0.89214 0.92090 0.91564 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.10 0.54 6.90 -4.04 -0.03 0.52 16 3 N -0.28 -2.34 3.34 -57.05 -0.19 -2.53 16 4 N -0.08 -0.95 13.16 60.35 0.79 -0.16 16 5 N -0.27 -3.24 12.41 30.23 0.38 -2.86 16 6 C -0.03 -0.26 11.99 -17.74 -0.21 -0.47 16 7 C -0.02 -0.14 6.51 -82.09 -0.53 -0.68 16 8 C 0.13 0.67 5.77 -4.97 -0.03 0.64 16 9 N -0.67 -4.09 6.37 -106.05 -0.68 -4.77 16 10 C 0.07 0.49 3.26 -65.88 -0.22 0.27 16 11 H 0.10 0.53 7.83 -51.93 -0.41 0.12 16 12 C -0.12 -0.80 6.77 -24.58 -0.17 -0.97 16 13 C 0.10 0.90 6.69 -2.53 -0.02 0.88 16 14 N -0.62 -8.06 3.33 -170.52 -0.57 -8.63 16 15 C 0.55 10.01 7.87 -10.98 -0.09 9.93 16 16 O -0.52 -11.43 16.19 5.56 0.09 -11.34 16 17 C -0.15 -2.89 5.16 36.01 0.19 -2.70 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.78 13.22 55.49 0.73 -25.05 16 23 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 C 0.08 0.82 6.60 -3.06 -0.02 0.80 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.36 5.88 -51.93 -0.31 0.06 16 31 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.37 7.23 -51.92 -0.38 -0.01 16 33 H 0.19 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.11 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.05 0.22 7.32 -51.93 -0.38 -0.16 16 36 H 0.34 2.28 5.78 -39.29 -0.23 2.06 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.77 7.48 -51.93 -0.39 0.38 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.63 7.85 -51.92 -0.41 1.23 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.63 7.50 -51.92 -0.39 0.25 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -36.56 386.48 -8.04 -44.60 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.65 Total: -2.24 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.54 Total: -5.02 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.47 Total: -43.99 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.56 -8.04 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267004246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.481 kcal (2) G-P(sol) polarization free energy of solvation -36.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds