Wall clock time and date at job start Tue Mar 31 2020 22:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47316 * 2 1 4 4 N 1.28713 * 125.86639 * 269.96927 * 3 2 1 5 5 N 1.28631 * 110.17684 * 180.02562 * 4 3 2 6 6 C 1.33770 * 108.88741 * 359.76955 * 5 4 3 7 7 C 1.35310 * 125.87056 * 89.99943 * 3 2 1 8 8 C 1.50700 * 126.91191 * 359.93720 * 7 3 2 9 9 N 1.46903 * 109.47519 * 275.00423 * 8 7 3 10 10 C 1.46897 * 111.00012 * 179.97438 * 9 8 7 11 11 H 1.09004 * 110.78456 * 31.76466 * 10 9 8 12 12 C 1.55156 * 110.71839 * 155.00108 * 10 9 8 13 13 C 1.54908 * 101.58336 * 153.86686 * 12 10 9 14 14 N 1.47422 * 104.83059 * 322.98859 * 13 12 10 15 15 C 1.34781 * 125.65200 * 204.09240 * 14 13 12 16 16 O 1.21274 * 120.00344 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99423 * 0.02562 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47027 * 108.70246 * 24.35933 * 14 13 12 28 28 H 1.09000 * 109.46559 * 60.00333 * 1 2 3 29 29 H 1.08996 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47087 * 300.00609 * 1 2 3 31 31 H 1.08997 * 109.47087 * 239.99391 * 2 1 3 32 32 H 1.09008 * 109.47045 * 120.00060 * 2 1 3 33 33 H 1.08001 * 126.75347 * 180.23672 * 6 5 4 34 34 H 1.09002 * 109.47280 * 155.00075 * 8 7 3 35 35 H 1.09003 * 109.47014 * 35.00363 * 8 7 3 36 36 H 1.00900 * 110.99580 * 56.04187 * 9 8 7 37 37 H 1.09005 * 111.00410 * 35.78816 * 12 10 9 38 38 H 1.09007 * 111.03810 * 271.95462 * 12 10 9 39 39 H 1.09000 * 110.36458 * 204.15429 * 13 12 10 40 40 H 1.08998 * 110.36968 * 81.82844 * 13 12 10 41 41 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 42 42 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.88355 * 118.13246 * 27 14 13 45 45 H 1.09008 * 109.88094 * 239.29537 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2703 2.0920 -1.0431 5 7 2.6835 3.2594 -0.6952 6 6 2.7033 3.3316 0.6404 7 6 2.2827 2.1287 1.0965 8 6 2.1327 1.7086 2.5359 9 7 0.7451 1.9243 2.9671 10 6 0.5610 1.5244 4.3685 11 1 1.4740 1.6889 4.9408 12 6 -0.6307 2.2872 5.0051 13 6 -1.0714 1.3032 6.1174 14 7 -0.8901 -0.0365 5.5296 15 6 -1.5392 -1.1552 5.9089 16 8 -1.3093 -2.2079 5.3525 17 6 -2.5508 -1.0977 7.0245 18 16 -3.2429 -2.7478 7.2969 19 6 -4.3613 -2.3971 8.6125 20 1 -4.4453 -1.3911 8.9962 21 6 -5.1344 -3.4139 9.1558 22 7 -5.0317 -4.6401 8.6885 23 14 -6.3196 -3.0422 10.5511 24 1 -7.0216 -4.2887 10.9494 25 1 -5.5647 -2.5059 11.7120 26 1 -7.3149 -2.0365 10.1005 27 6 0.1207 0.0484 4.4653 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.9988 4.1817 1.2373 34 1 2.8031 2.3007 3.1590 35 1 2.3836 0.6524 2.6342 36 1 0.0993 1.4368 2.3644 37 1 -1.4295 2.4396 4.2792 38 1 -0.3054 3.2369 5.4300 39 1 -2.1179 1.4660 6.3751 40 1 -0.4403 1.4194 6.9985 41 1 -3.3505 -0.4079 6.7547 42 1 -2.0657 -0.7523 7.9374 43 1 -5.5717 -5.3507 9.0684 44 1 0.9755 -0.5800 4.7149 45 1 -0.3120 -0.2703 3.5168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267004246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:23 Heat of formation + Delta-G solvation = 43.692459 kcal Electronic energy + Delta-G solvation = -26502.337088 eV Core-core repulsion = 22682.367572 eV Total energy + Delta-G solvation = -3819.969516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.28007 -41.10576 -38.99801 -36.84228 -36.02027 -34.59218 -33.14651 -31.71626 -31.46014 -30.82562 -28.79598 -27.66109 -26.20880 -25.37928 -24.15767 -23.51906 -21.87774 -21.35510 -20.74329 -19.59465 -18.41062 -18.06536 -17.82143 -17.22259 -16.89246 -16.87064 -16.29873 -16.08329 -16.01953 -15.63900 -15.05675 -14.93614 -14.75957 -14.51145 -14.39889 -13.96829 -13.89569 -13.69026 -13.56917 -13.25395 -13.16575 -13.10027 -12.86934 -12.75472 -12.65256 -12.61760 -12.43816 -12.30573 -11.81269 -11.79388 -11.66113 -11.13402 -11.12753 -11.00935 -10.29993 -10.25128 -9.77386 -9.50649 -8.68830 -8.35342 -6.14002 0.53942 1.23338 1.40366 1.43831 1.44817 1.54169 1.54818 1.57615 2.07118 2.26917 2.98815 3.00669 3.23355 3.34374 3.49930 3.60679 3.64462 3.78070 3.82691 3.90028 4.05649 4.09411 4.18025 4.22535 4.29418 4.38455 4.43198 4.44684 4.51573 4.63347 4.65393 4.72533 4.75339 4.82362 4.93843 5.04800 5.11255 5.21336 5.25853 5.35011 5.40905 5.60809 5.86862 6.14402 6.18822 6.35423 7.05835 7.09511 7.49615 8.73539 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026657 B = 0.001971 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.128984 B =14201.289550 C =14863.414360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.280 5.280 4 N -0.120 5.120 5 N -0.312 5.312 6 C -0.040 4.040 7 C -0.010 4.010 8 C 0.132 3.868 9 N -0.669 5.669 10 C 0.091 3.909 11 H 0.124 0.876 12 C -0.108 4.108 13 C 0.087 3.913 14 N -0.614 5.614 15 C 0.545 3.455 16 O -0.567 6.567 17 C -0.120 4.120 18 S -0.151 6.151 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.280 1.280 25 H -0.261 1.261 26 H -0.262 1.262 27 C 0.077 3.923 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.214 0.786 34 H 0.130 0.870 35 H 0.060 0.940 36 H 0.340 0.660 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.064 0.936 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.415 17.736 -10.377 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 N -0.075 5.075 4 N -0.099 5.099 5 N -0.176 5.176 6 C -0.199 4.199 7 C -0.144 4.144 8 C 0.002 3.998 9 N -0.301 5.301 10 C -0.019 4.019 11 H 0.142 0.858 12 C -0.147 4.147 13 C -0.035 4.035 14 N -0.349 5.349 15 C 0.333 3.667 16 O -0.446 6.446 17 C -0.271 4.271 18 S 0.076 5.924 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.205 1.205 25 H -0.186 1.186 26 H -0.186 1.186 27 C -0.048 4.048 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.230 0.770 34 H 0.148 0.852 35 H 0.078 0.922 36 H 0.160 0.840 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.792 16.634 -12.630 26.183 hybrid contribution -1.178 -0.348 2.079 2.415 sum 14.613 16.286 -10.551 24.292 Atomic orbital electron populations 1.22191 0.92614 1.04966 1.02744 1.22452 0.96555 0.75641 1.07527 1.47748 1.41405 1.14057 1.04312 1.78259 1.18705 0.99788 1.13148 1.75060 1.17089 1.10994 1.14446 1.23900 1.05740 0.99209 0.91060 1.22412 1.06799 0.93075 0.92079 1.20600 0.91541 1.01236 0.86455 1.60756 1.04683 1.62177 1.02517 1.22690 1.00589 0.89023 0.89647 0.85800 1.22773 0.97307 0.98314 0.96284 1.22742 1.03134 0.79665 0.97921 1.48346 1.40791 1.08643 1.37160 1.19774 0.80973 0.82605 0.83326 1.90680 1.66187 1.30890 1.56865 1.23306 1.00393 1.03374 1.00070 1.85562 1.51035 1.08548 1.47284 1.23155 1.26649 0.98473 1.21105 0.89863 1.26137 0.98748 0.94063 1.00213 1.70176 1.40409 1.01547 1.42599 0.85008 0.77649 0.77920 0.77466 1.20467 1.18552 1.18642 1.22913 0.91122 1.00092 0.90647 0.92190 0.88011 0.92194 0.86360 0.85777 0.76971 0.85208 0.92157 0.83960 0.90796 0.86569 0.90036 0.89141 0.87646 0.87489 0.91987 0.91725 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 71.98 0.74 -0.92 16 2 C 0.10 0.91 6.90 86.38 0.60 1.51 16 3 N -0.28 -4.34 3.34 -334.40 -1.12 -5.46 16 4 N -0.12 -2.74 13.16 37.02 0.49 -2.26 16 5 N -0.31 -7.36 12.41 -58.26 -0.72 -8.08 16 6 C -0.04 -0.64 11.99 83.73 1.00 0.36 16 7 C -0.01 -0.13 6.51 41.35 0.27 0.14 16 8 C 0.13 0.90 5.77 85.56 0.49 1.39 16 9 N -0.67 -5.91 6.37 -489.43 -3.12 -9.03 16 10 C 0.09 0.83 3.26 46.11 0.15 0.98 16 11 H 0.12 0.64 7.83 -2.39 -0.02 0.62 16 12 C -0.11 -1.04 6.77 31.99 0.22 -0.82 16 13 C 0.09 1.31 6.69 86.86 0.58 1.89 16 14 N -0.61 -14.69 3.33 -811.78 -2.70 -17.39 16 15 C 0.55 19.71 7.87 87.66 0.69 20.40 16 16 O -0.57 -25.72 16.19 -3.01 -0.05 -25.77 16 17 C -0.12 -4.68 5.16 71.24 0.37 -4.31 16 18 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 19 C -0.55 -30.66 9.50 67.96 0.65 -30.01 16 20 H 0.08 4.31 7.80 -2.92 -0.02 4.29 16 21 C 0.01 0.74 5.49 84.86 0.47 1.21 16 22 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 23 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 27 C 0.08 1.34 6.60 86.73 0.57 1.91 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.64 5.88 -2.39 -0.01 0.62 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 0.62 7.23 -2.38 -0.02 0.61 16 33 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.13 0.37 8.08 -2.39 -0.02 0.35 16 35 H 0.06 0.31 7.32 -2.39 -0.02 0.30 16 36 H 0.34 3.68 5.78 -89.69 -0.52 3.16 16 37 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.08 1.28 7.48 -2.39 -0.02 1.26 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.11 3.73 7.85 -2.39 -0.02 3.71 16 42 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.07 7.50 -2.38 -0.02 1.05 16 Total: -1.00 -83.64 386.48 1.21 -82.43 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.49 Total: 11.54 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 6.79 Total: -6.29 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -6.89 Total: -97.23 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -83.64 1.21 -82.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267004246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.118 kcal (2) G-P(sol) polarization free energy of solvation -83.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds