Wall clock time and date at job start Tue Mar 31 2020 22:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28713 * 125.86697 * 2 1 4 4 N 1.28639 * 110.17375 * 179.82155 * 3 2 1 5 5 C 1.33767 * 108.88860 * 0.45137 * 4 3 2 6 6 C 1.35311 * 125.86554 * 180.31428 * 2 1 3 7 7 C 1.50700 * 126.91128 * 359.97438 * 6 2 1 8 8 N 1.46903 * 109.47307 * 274.99896 * 7 6 2 9 9 C 1.46900 * 111.00240 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.08997 * 110.88792 * 57.42370 * 10 9 8 12 12 C 1.55155 * 111.00370 * 181.34819 * 10 9 8 13 13 C 1.54333 * 102.94228 * 153.57456 * 12 10 9 14 14 N 1.47024 * 107.26794 * 337.80939 * 13 12 10 15 15 C 1.34773 * 125.64597 * 178.97548 * 14 13 12 16 16 O 1.21280 * 120.00468 * 179.97438 * 15 14 13 17 17 C 1.50706 * 120.00157 * 359.95703 * 15 14 13 18 18 S 1.80999 * 109.47485 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00118 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00168 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00155 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99540 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00071 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47199 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46998 * 120.00405 * 23 21 19 26 26 H 1.48501 * 109.47134 * 240.00215 * 23 21 19 27 27 C 1.47415 * 108.70588 * 358.93833 * 14 13 12 28 28 H 1.09001 * 109.47060 * 269.69177 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.68666 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.68748 * 1 2 3 31 31 H 1.07998 * 126.75571 * 179.71333 * 5 4 3 32 32 H 1.08995 * 109.47559 * 35.00270 * 7 6 2 33 33 H 1.09010 * 109.47015 * 155.00283 * 7 6 2 34 34 H 1.00898 * 110.99684 * 56.04673 * 8 7 6 35 35 H 1.09002 * 109.47009 * 299.99851 * 9 8 7 36 36 H 1.08994 * 109.46947 * 59.99907 * 9 8 7 37 37 H 1.08993 * 110.71912 * 271.93561 * 12 10 9 38 38 H 1.09002 * 110.72077 * 35.21309 * 12 10 9 39 39 H 1.08999 * 109.87971 * 218.39305 * 13 12 10 40 40 H 1.09005 * 110.00807 * 97.29816 * 13 12 10 41 41 H 1.08996 * 109.46999 * 300.00608 * 17 15 14 42 42 H 1.09007 * 109.46811 * 59.99631 * 17 15 14 43 43 H 0.97003 * 119.99762 * 179.97438 * 22 21 19 44 44 H 1.09008 * 110.36883 * 265.29108 * 27 14 13 45 45 H 1.08998 * 110.36904 * 142.96840 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6951 0.0038 5 6 3.5322 -0.6405 -0.0036 6 6 2.2578 -1.0965 -0.0060 7 6 1.8116 -2.5359 -0.0134 8 7 1.5518 -2.9752 1.3642 9 6 1.1144 -4.3772 1.3961 10 6 0.8536 -4.7971 2.8440 11 1 0.1108 -4.1489 3.3089 12 6 0.4211 -6.2851 2.9221 13 6 0.8638 -6.6997 4.3413 14 7 1.9189 -5.7653 4.7597 15 6 2.5537 -5.7786 5.9485 16 8 3.4125 -4.9561 6.1868 17 6 2.1962 -6.8155 6.9821 18 16 3.2154 -6.5728 8.4581 19 6 2.6050 -7.8798 9.4698 20 1 1.8262 -8.5304 9.0999 21 6 3.1257 -8.0741 10.7417 22 7 4.0751 -7.2815 11.1922 23 14 2.4790 -9.4603 11.8140 24 1 1.4218 -10.2015 11.0805 25 1 3.5904 -10.3863 12.1493 26 1 1.9112 -8.8952 13.0644 27 6 2.1682 -4.8120 3.6633 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 0.8928 -0.5090 30 1 -0.3634 -0.8872 -0.5187 31 1 4.4322 -1.2375 -0.0072 32 1 0.8998 -2.6307 -0.6030 33 1 2.5936 -3.1565 -0.4512 34 1 0.8767 -2.3751 1.8138 35 1 0.1977 -4.4850 0.8162 36 1 1.8917 -5.0101 0.9682 37 1 -0.6593 -6.3790 2.8124 38 1 0.9393 -6.8775 2.1681 39 1 1.2546 -7.7171 4.3252 40 1 0.0198 -6.6377 5.0283 41 1 1.1435 -6.7168 7.2467 42 1 2.3768 -7.8108 6.5759 43 1 4.4387 -7.4170 12.0812 44 1 2.9973 -5.1544 3.0440 45 1 2.3770 -3.8198 4.0634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267030941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:12 Heat of formation + Delta-G solvation = 69.798504 kcal Electronic energy + Delta-G solvation = -25905.528429 eV Core-core repulsion = 22086.690955 eV Total energy + Delta-G solvation = -3818.837473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.61702 -39.89092 -37.87799 -36.45667 -34.97878 -32.92524 -32.42341 -31.24897 -29.61913 -28.94633 -28.41100 -26.37870 -25.47739 -24.38723 -22.96819 -22.75283 -21.32984 -20.62853 -19.28021 -17.76036 -17.65980 -17.11010 -16.65139 -16.56290 -16.32411 -15.31233 -15.16591 -14.99018 -14.80264 -14.54819 -14.14137 -13.87956 -13.85604 -13.71179 -13.49249 -13.40493 -13.07035 -12.79007 -12.61094 -12.40218 -12.12331 -11.95056 -11.76477 -11.50171 -11.25447 -11.14908 -11.07251 -11.00567 -10.98598 -10.75208 -10.47904 -9.79859 -9.61431 -9.37314 -9.06909 -9.03288 -8.45902 -8.21313 -6.49164 -6.21020 -3.91488 1.13654 1.91306 2.25771 2.94887 3.10358 3.21560 3.26528 3.31322 3.49823 3.64513 3.87306 3.99424 4.20085 4.20510 4.28211 4.36079 4.38362 4.46580 4.60478 4.68409 4.85877 4.93130 4.95696 5.04400 5.10536 5.12390 5.14051 5.29923 5.31989 5.38620 5.49000 5.53953 5.64421 5.74762 5.84282 5.91964 5.97301 5.98200 6.10939 6.14993 6.30675 6.48012 6.67487 7.60224 7.71367 8.15847 8.35956 8.60258 9.24159 10.86473 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.001822 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.848892 B =15367.028454 C =16185.772103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.290 5.290 3 N -0.086 5.086 4 N -0.270 5.270 5 C -0.026 4.026 6 C -0.020 4.020 7 C 0.136 3.864 8 N -0.683 5.683 9 C 0.073 3.927 10 C -0.101 4.101 11 H 0.083 0.917 12 C -0.124 4.124 13 C 0.102 3.898 14 N -0.630 5.630 15 C 0.547 3.453 16 O -0.514 6.514 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.125 3.875 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.191 0.809 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.342 0.658 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.066 0.934 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.319 6.109 -28.175 31.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.085 5.085 3 N -0.065 5.065 4 N -0.135 5.135 5 C -0.184 4.184 6 C -0.153 4.153 7 C 0.006 3.994 8 N -0.314 5.314 9 C -0.056 4.056 10 C -0.121 4.121 11 H 0.102 0.898 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.367 5.367 15 C 0.336 3.664 16 O -0.388 6.388 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.002 3.998 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.208 0.792 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.194 8.781 -27.450 30.918 hybrid contribution -2.576 -2.981 0.146 3.942 sum -13.770 5.800 -27.305 31.126 Atomic orbital electron populations 1.22278 0.73115 1.05839 1.05187 1.47229 1.09186 1.04725 1.47369 1.78344 0.96756 1.11617 1.19813 1.75132 1.09370 1.12661 1.16370 1.23435 0.97286 0.91722 1.05976 1.22042 0.91556 0.91207 1.10461 1.20314 1.00952 0.87655 0.90513 1.60432 1.51539 1.03659 1.15796 1.21938 0.99204 0.88806 0.95700 1.22376 0.98145 0.96634 0.94940 0.89825 1.22650 1.01692 0.95322 0.96559 1.21961 0.91018 0.93842 0.95339 1.48546 1.39770 1.33190 1.15241 1.20006 0.80600 0.85306 0.80531 1.90718 1.31060 1.39439 1.77602 1.23506 1.05658 0.99796 1.00736 1.85427 1.48724 1.43629 1.05692 1.22899 1.25596 1.17312 1.02457 0.90910 1.25001 0.94776 0.96916 0.96963 1.70032 1.25206 1.36810 1.18170 0.86113 0.78714 0.80871 0.79767 1.19639 1.20559 1.20571 1.22046 0.95843 0.94346 0.87568 0.88843 0.87802 0.88637 0.79170 0.93854 0.87687 0.84044 0.94423 0.89928 0.90058 0.90305 0.91293 0.91385 0.89425 0.89387 0.92232 0.91621 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.21 59.85 0.67 0.87 16 2 N -0.29 -2.18 3.74 -63.78 -0.24 -2.42 16 3 N -0.09 -0.97 13.17 60.35 0.79 -0.18 16 4 N -0.27 -3.35 12.41 30.23 0.38 -2.98 16 5 C -0.03 -0.24 11.99 -17.74 -0.21 -0.46 16 6 C -0.02 -0.15 6.51 -82.09 -0.53 -0.68 16 7 C 0.14 0.58 5.91 -4.97 -0.03 0.55 16 8 N -0.68 -3.69 6.31 -115.06 -0.73 -4.42 16 9 C 0.07 0.33 5.13 -3.82 -0.02 0.31 16 10 C -0.10 -0.70 3.23 -88.47 -0.29 -0.98 16 11 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 12 C -0.12 -0.77 6.42 -24.89 -0.16 -0.93 16 13 C 0.10 1.02 6.49 -3.06 -0.02 1.00 16 14 N -0.63 -9.01 3.33 -170.51 -0.57 -9.58 16 15 C 0.55 10.77 7.87 -10.98 -0.09 10.69 16 16 O -0.51 -12.28 16.12 5.56 0.09 -12.19 16 17 C -0.15 -3.04 5.35 36.01 0.19 -2.85 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.12 1.45 6.20 -2.53 -0.02 1.43 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.10 0.02 7.22 -51.93 -0.38 -0.36 16 31 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.04 0.10 7.32 -51.93 -0.38 -0.28 16 33 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.34 1.75 8.72 -39.29 -0.34 1.41 16 35 H 0.04 0.12 8.14 -51.93 -0.42 -0.31 16 36 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.42 8.04 -51.93 -0.42 0.00 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.07 0.76 8.00 -51.92 -0.42 0.35 16 45 H 0.08 1.11 8.04 -51.93 -0.42 0.70 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -38.93 392.08 -8.13 -47.06 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.96 Total: -4.05 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.30 Total: -4.09 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.37 Total: -45.16 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.93 -8.13 -47.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267030941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.858 kcal (2) G-P(sol) polarization free energy of solvation -38.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds