Wall clock time and date at job start Tue Mar 31 2020 22:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28713 * 125.86697 * 2 1 4 4 N 1.28639 * 110.17375 * 179.82155 * 3 2 1 5 5 C 1.33767 * 108.88860 * 0.45137 * 4 3 2 6 6 C 1.35311 * 125.86554 * 180.31428 * 2 1 3 7 7 C 1.50700 * 126.91128 * 359.97438 * 6 2 1 8 8 N 1.46903 * 109.47307 * 274.99896 * 7 6 2 9 9 C 1.46900 * 111.00240 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.08997 * 110.88792 * 57.42370 * 10 9 8 12 12 C 1.55155 * 111.00370 * 181.34819 * 10 9 8 13 13 C 1.54333 * 102.94228 * 153.57456 * 12 10 9 14 14 N 1.47024 * 107.26794 * 337.80939 * 13 12 10 15 15 C 1.34773 * 125.64597 * 178.97548 * 14 13 12 16 16 O 1.21280 * 120.00468 * 179.97438 * 15 14 13 17 17 C 1.50706 * 120.00157 * 359.95703 * 15 14 13 18 18 S 1.80999 * 109.47485 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00118 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00168 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00155 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99540 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00071 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47199 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46998 * 120.00405 * 23 21 19 26 26 H 1.48501 * 109.47134 * 240.00215 * 23 21 19 27 27 C 1.47415 * 108.70588 * 358.93833 * 14 13 12 28 28 H 1.09001 * 109.47060 * 269.69177 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.68666 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.68748 * 1 2 3 31 31 H 1.07998 * 126.75571 * 179.71333 * 5 4 3 32 32 H 1.08995 * 109.47559 * 35.00270 * 7 6 2 33 33 H 1.09010 * 109.47015 * 155.00283 * 7 6 2 34 34 H 1.00898 * 110.99684 * 56.04673 * 8 7 6 35 35 H 1.09002 * 109.47009 * 299.99851 * 9 8 7 36 36 H 1.08994 * 109.46947 * 59.99907 * 9 8 7 37 37 H 1.08993 * 110.71912 * 271.93561 * 12 10 9 38 38 H 1.09002 * 110.72077 * 35.21309 * 12 10 9 39 39 H 1.08999 * 109.87971 * 218.39305 * 13 12 10 40 40 H 1.09005 * 110.00807 * 97.29816 * 13 12 10 41 41 H 1.08996 * 109.46999 * 300.00608 * 17 15 14 42 42 H 1.09007 * 109.46811 * 59.99631 * 17 15 14 43 43 H 0.97003 * 119.99762 * 179.97438 * 22 21 19 44 44 H 1.09008 * 110.36883 * 265.29108 * 27 14 13 45 45 H 1.08998 * 110.36904 * 142.96840 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6951 0.0038 5 6 3.5322 -0.6405 -0.0036 6 6 2.2578 -1.0965 -0.0060 7 6 1.8116 -2.5359 -0.0134 8 7 1.5518 -2.9752 1.3642 9 6 1.1144 -4.3772 1.3961 10 6 0.8536 -4.7971 2.8440 11 1 0.1108 -4.1489 3.3089 12 6 0.4211 -6.2851 2.9221 13 6 0.8638 -6.6997 4.3413 14 7 1.9189 -5.7653 4.7597 15 6 2.5537 -5.7786 5.9485 16 8 3.4125 -4.9561 6.1868 17 6 2.1962 -6.8155 6.9821 18 16 3.2154 -6.5728 8.4581 19 6 2.6050 -7.8798 9.4698 20 1 1.8262 -8.5304 9.0999 21 6 3.1257 -8.0741 10.7417 22 7 4.0751 -7.2815 11.1922 23 14 2.4790 -9.4603 11.8140 24 1 1.4218 -10.2015 11.0805 25 1 3.5904 -10.3863 12.1493 26 1 1.9112 -8.8952 13.0644 27 6 2.1682 -4.8120 3.6633 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 0.8928 -0.5090 30 1 -0.3634 -0.8872 -0.5187 31 1 4.4322 -1.2375 -0.0072 32 1 0.8998 -2.6307 -0.6030 33 1 2.5936 -3.1565 -0.4512 34 1 0.8767 -2.3751 1.8138 35 1 0.1977 -4.4850 0.8162 36 1 1.8917 -5.0101 0.9682 37 1 -0.6593 -6.3790 2.8124 38 1 0.9393 -6.8775 2.1681 39 1 1.2546 -7.7171 4.3252 40 1 0.0198 -6.6377 5.0283 41 1 1.1435 -6.7168 7.2467 42 1 2.3768 -7.8108 6.5759 43 1 4.4387 -7.4170 12.0812 44 1 2.9973 -5.1544 3.0440 45 1 2.3770 -3.8198 4.0634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267030941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:11 Heat of formation + Delta-G solvation = 39.372855 kcal Electronic energy + Delta-G solvation = -25906.847784 eV Core-core repulsion = 22086.690955 eV Total energy + Delta-G solvation = -3820.156828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.24176 -41.03231 -38.89422 -37.14469 -35.52332 -34.59978 -33.75222 -32.08525 -30.80850 -29.87177 -28.83768 -27.73455 -26.96941 -25.13151 -23.59722 -23.47057 -21.85384 -21.22740 -20.67922 -19.55700 -18.23245 -18.01746 -17.66492 -17.43848 -16.96537 -16.89422 -16.43955 -16.08238 -15.66503 -15.56649 -15.36319 -14.81352 -14.60985 -14.38296 -14.19776 -14.16173 -13.89179 -13.73978 -13.67506 -13.36897 -13.17162 -13.15217 -12.91870 -12.61631 -12.60325 -12.53131 -12.11956 -11.91199 -11.80621 -11.69105 -11.53805 -11.16896 -11.05772 -10.95970 -10.28941 -10.23841 -9.65557 -9.34309 -8.69926 -8.35675 -6.14901 0.55693 1.24247 1.41318 1.45212 1.50543 1.55741 1.57074 1.57111 2.13735 2.26432 2.98407 3.08449 3.26569 3.44691 3.62539 3.68067 3.69673 3.86827 3.92905 4.02005 4.13320 4.21203 4.24785 4.36626 4.41779 4.45589 4.47362 4.52497 4.65369 4.67348 4.73286 4.80899 4.84979 4.92282 4.99127 5.05905 5.15121 5.22444 5.35796 5.40571 5.48349 5.63501 5.99332 6.18888 6.34907 6.42932 7.05149 7.13689 7.48056 8.73987 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.001822 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.848892 B =15367.028454 C =16185.772103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.282 5.282 3 N -0.125 5.125 4 N -0.317 5.317 5 C -0.052 4.052 6 C -0.006 4.006 7 C 0.143 3.857 8 N -0.703 5.703 9 C 0.081 3.919 10 C -0.086 4.086 11 H 0.086 0.914 12 C -0.109 4.109 13 C 0.086 3.914 14 N -0.620 5.620 15 C 0.541 3.459 16 O -0.572 6.572 17 C -0.118 4.118 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.002 2.998 24 H -0.255 1.255 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.118 3.882 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.203 0.797 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.343 0.657 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.066 0.934 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 3.347 -30.327 34.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.077 5.077 3 N -0.104 5.104 4 N -0.181 5.181 5 C -0.211 4.211 6 C -0.140 4.140 7 C 0.013 3.987 8 N -0.336 5.336 9 C -0.048 4.048 10 C -0.106 4.106 11 H 0.104 0.896 12 C -0.147 4.147 13 C -0.036 4.036 14 N -0.355 5.355 15 C 0.329 3.671 16 O -0.451 6.451 17 C -0.269 4.269 18 S 0.071 5.929 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.178 1.178 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.004 4.004 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.896 6.024 -29.669 33.741 hybrid contribution -1.522 -2.124 0.697 2.704 sum -16.418 3.901 -28.972 33.529 Atomic orbital electron populations 1.22746 0.70346 1.07849 1.06613 1.47607 1.10706 1.04025 1.45349 1.78237 0.96945 1.13271 1.21965 1.75046 1.10453 1.14510 1.18060 1.23863 0.99147 0.91168 1.06930 1.22491 0.90756 0.92528 1.08218 1.20413 1.02600 0.85317 0.90399 1.60369 1.52264 1.04322 1.16625 1.21896 1.00842 0.88094 0.93974 1.22328 0.94948 0.97629 0.95694 0.89589 1.22671 1.03692 0.94320 0.93998 1.22406 0.89802 0.93255 0.98142 1.48545 1.39160 1.33991 1.13811 1.19809 0.80674 0.84555 0.82023 1.90691 1.33831 1.41442 1.79101 1.23291 1.04705 1.01183 0.97700 1.85646 1.51937 1.44917 1.10373 1.23219 1.25851 1.17223 1.02909 0.89818 1.26185 0.94789 0.99840 0.98535 1.70202 1.26799 1.39028 1.18815 0.84863 0.78410 0.76972 0.77426 1.17826 1.19895 1.19905 1.22268 0.99083 0.92042 0.87019 0.87648 0.87214 0.85316 0.78018 0.90658 0.86811 0.83897 0.91146 0.89564 0.86999 0.88534 0.90644 0.90754 0.87647 0.87614 0.91974 0.91571 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.18 11.21 127.77 1.43 1.61 16 2 N -0.28 -3.95 3.74 -355.70 -1.33 -5.28 16 3 N -0.13 -2.93 13.17 37.02 0.49 -2.44 16 4 N -0.32 -8.31 12.41 -58.26 -0.72 -9.03 16 5 C -0.05 -0.99 11.99 83.73 1.00 0.01 16 6 C -0.01 -0.08 6.51 41.36 0.27 0.19 16 7 C 0.14 0.72 5.91 85.56 0.51 1.22 16 8 N -0.70 -5.40 6.31 -517.93 -3.27 -8.67 16 9 C 0.08 0.37 5.13 86.30 0.44 0.81 16 10 C -0.09 -0.88 3.23 -9.40 -0.03 -0.91 16 11 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 12 C -0.11 -0.82 6.42 31.79 0.20 -0.61 16 13 C 0.09 1.45 6.49 86.73 0.56 2.01 16 14 N -0.62 -17.11 3.33 -811.77 -2.70 -19.81 16 15 C 0.54 21.68 7.87 87.66 0.69 22.37 16 16 O -0.57 -28.73 16.12 -3.03 -0.05 -28.78 16 17 C -0.12 -4.90 5.35 71.24 0.38 -4.52 16 18 S -0.16 -8.94 20.57 -56.49 -1.16 -10.10 16 19 C -0.54 -31.48 9.50 67.95 0.65 -30.84 16 20 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.64 5.49 84.86 0.47 1.10 16 22 N -0.91 -56.77 13.22 21.65 0.29 -56.49 16 23 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 24 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.12 2.61 6.20 86.86 0.54 3.15 16 28 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.13 -0.51 7.22 -2.39 -0.02 -0.53 16 31 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.08 -0.05 7.32 -2.39 -0.02 -0.07 16 33 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.34 2.48 8.72 -89.70 -0.78 1.70 16 35 H 0.07 -0.05 8.14 -2.39 -0.02 -0.06 16 36 H 0.09 0.40 8.10 -2.39 -0.02 0.38 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.10 0.47 8.04 -2.39 -0.02 0.45 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 42 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.07 1.47 8.00 -2.38 -0.02 1.45 16 45 H 0.05 1.41 8.04 -2.39 -0.02 1.39 16 Total: -1.00 -92.45 392.08 0.90 -91.56 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.22 Total: 7.66 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 7.11 Total: -4.40 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -7.25 Total: -101.72 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.05 Total: -28.78 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.10 kcal Total: -92.45 0.90 -91.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267030941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.932 kcal (2) G-P(sol) polarization free energy of solvation -92.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds